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09100 Metabolism
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09120 Genetic Information Processing
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09121 Transcription
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09122 Translation
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09123 Folding, sorting and degradation
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09124 Replication and repair
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03030 DNA replication [PATH:zmn03030]
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03410 Base excision repair [PATH:zmn03410]
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03420 Nucleotide excision repair [PATH:zmn03420]
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03430 Mismatch repair [PATH:zmn03430]
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03440 Homologous recombination [PATH:zmn03440]
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Za10_0104 single-stranded-DNA-specific exonuclease RecJ
Za10_1663 single-strand binding protein
Za10_1626 DNA replication and repair protein RecF
Za10_0593 DNA repair protein RecO
Za10_0474 recombination protein RecR
Za10_0161 recA protein
Za10_0987 DNA polymerase I
Za10_1050 Holliday junction DNA helicase RuvA
Za10_1047 Holliday junction DNA helicase RuvB
Za10_1051 crossover junction endodeoxyribonuclease RuvC
Za10_1572 helicase domain protein
Za10_1666 DNA polymerase III, alpha subunit
Za10_0322 DNA polymerase III, beta subunit
Za10_0431 DNA polymerase III, subunits gamma and tau
Za10_1756 DNA polymerase III, delta subunit
Za10_0227 DNA-directed DNA polymerase
Za10_1138 DNA polymerase III, epsilon subunit
Za10_1311 Exonuclease RNase T and DNA polymerase III
Za10_0042 DNA polymerase III chi subunit HolC
Za10_1222 primosomal protein N'
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K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K03111 ssb; single-strand DNA-binding protein
K03629 recF; DNA replication and repair protein RecF
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03553 recA; recombination protein RecA
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
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03450 Non-homologous end-joining
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03460 Fanconi anemia pathway
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09126 Chromosome
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09125 Information processing in viruses
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09130 Environmental Information Processing
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09140 Cellular Processes
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09150 Organismal Systems
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09160 Human Diseases
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09180 Brite Hierarchies
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09181 Protein families: metabolism
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09182 Protein families: genetic information processing
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03000 Transcription factors [BR:zmn03000]
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03021 Transcription machinery [BR:zmn03021]
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03019 Messenger RNA biogenesis [BR:zmn03019]
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03041 Spliceosome
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03011 Ribosome [BR:zmn03011]
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03009 Ribosome biogenesis [BR:zmn03009]
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03016 Transfer RNA biogenesis [BR:zmn03016]
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03012 Translation factors [BR:zmn03012]
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03110 Chaperones and folding catalysts [BR:zmn03110]
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04131 Membrane trafficking [BR:zmn04131]
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04121 Ubiquitin system
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03051 Proteasome
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03032 DNA replication proteins [BR:zmn03032]
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03036 Chromosome and associated proteins [BR:zmn03036]
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03400 DNA repair and recombination proteins [BR:zmn03400]
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Za10_1183 methylated-DNA/protein-cysteine methyltransferase
Za10_1740 Deoxyribodipyrimidine photo-lyase
Za10_1542 A/G-specific adenine glycosylase
Za10_0566 endonuclease III
Za10_1074 S1/P1 nuclease
Za10_0138 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut
Za10_1569 Uracil-DNA glycosylase superfamily
Za10_0209 phage SPO1 DNA polymerase-related protein
Za10_0144 Uracil-DNA glycosylase superfamily
Za10_0864 HhH-GPD family protein
Za10_0142 formamidopyrimidine-DNA glycosylase
Za10_1520 exodeoxyribonuclease III Xth
Za10_1786 exodeoxyribonuclease III Xth
Za10_0104 single-stranded-DNA-specific exonuclease RecJ
Za10_0875 DNA ligase, NAD-dependent
Za10_0987 DNA polymerase I
Za10_1623 excinuclease ABC, A subunit
Za10_0877 excinuclease ABC, B subunit
Za10_0594 excinuclease ABC, C subunit
Za10_0680 UvrD/REP helicase
Za10_0543 DNA-directed RNA polymerase, beta subunit
Za10_0542 DNA-directed RNA polymerase, beta' subunit
Za10_0712 DNA-directed RNA polymerase, alpha subunit
Za10_1500 DNA-directed RNA polymerase, omega subunit
Za10_1571 transcription-repair coupling factor
Za10_1236 DNA mismatch repair protein MutS
Za10_0884 DNA mismatch repair protein MutL
Za10_0926 exodeoxyribonuclease VII, large subunit
Za10_0435 exodeoxyribonuclease VII, small subunit
Za10_1666 DNA polymerase III, alpha subunit
Za10_0322 DNA polymerase III, beta subunit
Za10_0042 DNA polymerase III chi subunit HolC
Za10_1756 DNA polymerase III, delta subunit
Za10_0227 DNA-directed DNA polymerase
Za10_1138 DNA polymerase III, epsilon subunit
Za10_1311 Exonuclease RNase T and DNA polymerase III
Za10_0431 DNA polymerase III, subunits gamma and tau
Za10_1663 single-strand binding protein
Za10_0161 recA protein
Za10_1050 Holliday junction DNA helicase RuvA
Za10_1047 Holliday junction DNA helicase RuvB
Za10_1051 crossover junction endodeoxyribonuclease RuvC
Za10_1222 primosomal protein N'
Za10_1369 SMC domain protein
Za10_1370 nuclease SbcCD, D subunit
Za10_0668 DNA repair protein RadA
Za10_1626 DNA replication and repair protein RecF
Za10_1572 helicase domain protein
Za10_0593 DNA repair protein RecO
Za10_0474 recombination protein RecR
Za10_1213 DNA repair protein RecN
Za10_0220 double-strand break repair helicase AddA
Za10_0219 double-strand break repair protein AddB
Za10_1903 CRISPR-associated protein Cas1
Za10_0587 CRISPR-associated protein Cas1
Za10_0576 DNA gyrase, A subunit
Za10_1627 DNA gyrase, B subunit
Za10_0136 DNA topoisomerase I
Za10_0972 histone family protein DNA-binding protein
Za10_0203 integration host factor, alpha subunit
Za10_1433 integration host factor, beta subunit
Za10_1011 SOS-response transcriptional repressor, LexA
Za10_0567 regulatory protein RecX
Za10_0404 helicase c2
Za10_0271 ribonucleoside-diphosphate reductase, alpha subunit
Za10_0804 Ribonucleoside-diphosphate reductase
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K00567 ogt; methylated-DNA-[protein]-cysteine S-methyltransferase [EC:2.1.1.63]
K01669 phr; deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]
K03575 mutY; A/G-specific adenine glycosylase [EC:3.2.2.31]
K10773 NTHL1; endonuclease III [EC:3.2.2.- 4.2.99.18]
K05986 NUCS; nuclease S1 [EC:3.1.30.1]
K01520 dut; dUTP diphosphatase [EC:3.6.1.23]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K21929 udg; uracil-DNA glycosylase [EC:3.2.2.27]
K01247 alkA; DNA-3-methyladenine glycosylase II [EC:3.2.2.21]
K10563 mutM; formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K01142 E3.1.11.2; exodeoxyribonuclease III [EC:3.1.11.2]
K07462 recJ; single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
K01972 E6.5.1.2; DNA ligase (NAD+) [EC:6.5.1.2]
K02335 polA; DNA polymerase I [EC:2.7.7.7]
K03701 uvrA; excinuclease ABC subunit A
K03702 uvrB; excinuclease ABC subunit B
K03703 uvrC; excinuclease ABC subunit C
K03657 uvrD; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
K03043 rpoB; DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
K03046 rpoC; DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
K03040 rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
K03060 rpoZ; DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
K03723 mfd; transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
K03555 mutS; DNA mismatch repair protein MutS
K03572 mutL; DNA mismatch repair protein MutL
K03601 xseA; exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
K03602 xseB; exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
K02337 dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]
K02338 dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]
K02339 holC; DNA polymerase III subunit chi [EC:2.7.7.7]
K02340 holA; DNA polymerase III subunit delta [EC:2.7.7.7]
K02341 holB; DNA polymerase III subunit delta' [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02342 dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]
K02343 dnaX; DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
K03111 ssb; single-strand DNA-binding protein
K03553 recA; recombination protein RecA
K03550 ruvA; holliday junction DNA helicase RuvA
K03551 ruvB; holliday junction DNA helicase RuvB [EC:5.6.2.4]
K01159 ruvC; crossover junction endodeoxyribonuclease RuvC [EC:3.1.21.10]
K04066 priA; primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:5.6.2.4]
K03546 sbcC; DNA repair protein SbcC/Rad50
K03547 sbcD; DNA repair protein SbcD/Mre11
K04485 radA; DNA repair protein RadA/Sms
K03629 recF; DNA replication and repair protein RecF
K03655 recG; ATP-dependent DNA helicase RecG [EC:5.6.2.4]
K03584 recO; DNA repair protein RecO (recombination protein O)
K06187 recR; recombination protein RecR
K03631 recN; DNA repair protein RecN (Recombination protein N)
K16898 addA; ATP-dependent helicase/nuclease subunit A [EC:5.6.2.4 3.1.-.-]
K16899 addB; ATP-dependent helicase/nuclease subunit B [EC:5.6.2.4 3.1.-.-]
K15342 cas1; CRISP-associated protein Cas1
K15342 cas1; CRISP-associated protein Cas1
K02469 gyrA; DNA gyrase subunit A [EC:5.6.2.2]
K02470 gyrB; DNA gyrase subunit B [EC:5.6.2.2]
K03168 topA; DNA topoisomerase I [EC:5.6.2.1]
K03530 hupB; DNA-binding protein HU-beta
K04764 ihfA; integration host factor subunit alpha
K05788 ihfB; integration host factor subunit beta
K01356 lexA; repressor LexA [EC:3.4.21.88]
K03565 recX; regulatory protein
K03722 dinG; ATP-dependent DNA helicase DinG [EC:5.6.2.3]
K00525 E1.17.4.1A; ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
K00526 E1.17.4.1B; ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
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03029 Mitochondrial biogenesis [BR:zmn03029]
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09183 Protein families: signaling and cellular processes
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09185 Viral protein families
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09184 RNA family
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09190 Not Included in Pathway or Brite
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