| T01001 | hsa | Homo sapiens (human) |
| T01005 | ptr | Pan troglodytes (chimpanzee) |
| T02283 | pps | Pan paniscus (bonobo) |
| T02442 | ggo | Gorilla gorilla gorilla (western lowland gorilla) |
| T01416 | pon | Pongo abelii (Sumatran orangutan) |
| T03265 | nle | Nomascus leucogenys (northern white-cheeked gibbon) |
| T01028 | mcc | Macaca mulatta (rhesus monkey) |
| T02918 | mcf | Macaca fascicularis (crab-eating macaque) |
| T04361 | csab | Chlorocebus sabaeus (green monkey) |
| T03989 | rro | Rhinopithecus roxellana (golden snub-nosed monkey) |
| T04641 | rbb | Rhinopithecus bieti (black snub-nosed monkey) |
| T03264 | cjc | Callithrix jacchus (white-tufted-ear marmoset) |
| T04350 | sbq | Saimiri boliviensis boliviensis (Bolivian squirrel monkey) |
| T01002 | mmu | Mus musculus (mouse) |
| T01003 | rno | Rattus norvegicus (rat) |
| T02813 | cge | Cricetulus griseus (Chinese hamster) |
| T03372 | ngi | Nannospalax galili (Upper Galilee mountains blind mole rat) |
| T02812 | hgl | Heterocephalus glaber (naked mole rat) |
| T04791 | ccan | Castor canadensis (American beaver) |
| T03373 | ocu | Oryctolagus cuniculus (rabbit) |
| T02978 | tup | Tupaia chinensis (Chinese tree shrew) |
| T01007 | cfa | Canis familiaris (dog) |
| T01329 | aml | Ailuropoda melanoleuca (giant panda) |
| T03271 | umr | Ursus maritimus (polar bear) |
| T02385 | fca | Felis catus (domestic cat) |
| T02988 | ptg | Panthera tigris altaica (Amur tiger) |
| T04657 | aju | Acinonyx jubatus (cheetah) |
| T01008 | bta | Bos taurus (cow) |
| T02919 | bom | Bos mutus (wild yak) |
| T04792 | biu | Bos indicus (zebu cattle) |
| T02909 | phd | Pantholops hodgsonii (chiru) |
| T02910 | chx | Capra hircus (goat) |
| T03117 | oas | Ovis aries (sheep) |
| T01009 | ssc | Sus scrofa (pig) |
| T02979 | cfr | Camelus ferus (Wild Bactrian camel) |
| T04642 | cdk | Camelus dromedarius (Arabian camel) |
| T03086 | bacu | Balaenoptera acutorostrata scammoni (minke whale) |
| T03090 | lve | Lipotes vexillifer (Yangtze River dolphin) |
| T01058 | ecb | Equus caballus (horse) |
| T04644 | epz | Equus przewalskii (Przewalski's horse) |
| T04645 | eai | Equus asinus (ass) |
| T02920 | myb | Myotis brandtii (Brandt's bat) |
| T02992 | myd | Myotis davidii |
| T04661 | hai | Hipposideros armiger (great roundleaf bat) |
| T04863 | rss | Rhinolophus sinicus (Chinese rufous horseshoe bat) |
| T02993 | pale | Pteropus alecto (black flying fox) |
| T04351 | lav | Loxodonta africana (African savanna elephant) |
| T01031 | mdo | Monodelphis domestica (opossum) |
| T02286 | shr | Sarcophilus harrisii (Tasmanian devil) |
| T01045 | oaa | Ornithorhynchus anatinus (platypus) |
| T01006 | gga | Gallus gallus (chicken) |
| T01523 | mgp | Meleagris gallopavo (turkey) |
| T04297 | cjo | Coturnix japonica (Japanese quail) |
| T02816 | apla | Anas platyrhynchos (mallard) |
| T04896 | acyg | Anser cygnoides domesticus (swan goose) |
| T01082 | tgu | Taeniopygia guttata (zebra finch) |
| T03755 | gfr | Geospiza fortis (medium ground-finch) |
| T02815 | fab | Ficedula albicollis (collared flycatcher) |
| T02921 | phi | Pseudopodoces humilis (Tibetan ground-tit) |
| T03546 | ccw | Corvus cornix (hooded crow) |
| T02856 | fpg | Falco peregrinus (peregrine falcon) |
| T02911 | fch | Falco cherrug (Saker falcon) |
| T02912 | clv | Columba livia (rock pigeon) |
| T04298 | aam | Apteryx australis mantelli (brown kiwi) |
| T02922 | asn | Alligator sinensis (Chinese alligator) |
| T03087 | amj | Alligator mississippiensis (American alligator) |
| T02980 | pss | Pelodiscus sinensis (Chinese soft-shelled turtle) |
| T02989 | cmy | Chelonia mydas (green sea turtle) |
| T04662 | cpic | Chrysemys picta (western painted turtle) |
| T01608 | acs | Anolis carolinensis (green anole) |
| T03091 | pbi | Python bivittatus (Burmese python) |
| T04299 | gja | Gekko japonicus |
| T01010 | xla | Xenopus laevis (African clawed frog) |
| T01011 | xtr | Xenopus tropicalis (western clawed frog) |
| T04897 | npr | Nanorana parkeri |
| T01004 | dre | Danio rerio (zebrafish) |
| T04916 | srx | Sinocyclocheilus rhinocerous |
| T04917 | sanh | Sinocyclocheilus anshuiensis |
| T04918 | sgh | Sinocyclocheilus grahami |
| T04658 | ipu | Ictalurus punctatus (channel catfish) |
| T02386 | tru | Takifugu rubripes (torafugu) |
| T04346 | tng | Tetraodon nigroviridis (spotted green pufferfish) |
| T04659 | lco | Larimichthys crocea (large yellow croaker) |
| T04920 | ncc | Notothenia coriiceps (black rockcod) |
| T02814 | mze | Maylandia zebra (zebra mbuna) |
| T02443 | ola | Oryzias latipes (Japanese medaka) |
| T02923 | xma | Xiphophorus maculatus (southern platyfish) |
| T04866 | csem | Cynoglossus semilaevis (tongue sole) |
| T04895 | lcf | Lates calcarifer (barramundi perch) |
| T04363 | sasa | Salmo salar (Atlantic salmon) |
| T04894 | els | Esox lucius (northern pike) |
| T04919 | sfm | Scleropages formosus (Asian bonytongue) |
| T02913 | lcm | Latimeria chalumnae (coelacanth) |
| T03088 | cmk | Callorhinchus milii (elephant shark) |
| T01074 | bfo | Branchiostoma floridae (Florida lancelet) |
| T01056 | cin | Ciona intestinalis (sea squirt) |
| T01019 | spu | Strongylocentrotus purpuratus (purple sea urchin) |
| T04123 | sko | Saccoglossus kowalevskii (acorn worm) |
| T00030 | dme | Drosophila melanogaster (fruit fly) |
| T01032 | dpo | Drosophila pseudoobscura pseudoobscura |
| T01059 | dan | Drosophila ananassae |
| T01060 | der | Drosophila erecta |
| T01063 | dpe | Drosophila persimilis |
| T01064 | dse | Drosophila sechellia |
| T01065 | dsi | Drosophila simulans |
| T01067 | dwi | Drosophila willistoni |
| T01068 | dya | Drosophila yakuba |
| T01061 | dgr | Drosophila grimshawi |
| T01062 | dmo | Drosophila mojavensis |
| T01066 | dvi | Drosophila virilis |
| T03448 | mde | Musca domestica (house fly) |
| T01036 | aga | Anopheles gambiae (mosquito) |
| T01053 | aag | Aedes aegypti (yellow fever mosquito) |
| T01079 | cqu | Culex quinquefasciatus (southern house mosquito) |
| T01057 | ame | Apis mellifera (honey bee) |
| T04362 | bim | Bombus impatiens (common eastern bumble bee) |
| T04364 | bter | Bombus terrestris (buff-tailed bumblebee) |
| T03916 | soc | Solenopsis invicta (red fire ant) |
| T03917 | aec | Acromyrmex echinatior (Panamanian leafcutter ant) |
| T04923 | acep | Atta cephalotes (leaf cutting ant) |
| T04903 | pbar | Pogonomyrmex barbatus (red harvester ant) |
| T03918 | hst | Harpegnathos saltator (Jerdon's jumping ant) |
| T03919 | cfo | Camponotus floridanus (Florida carpenter ant) |
| T04898 | lhu | Linepithema humile (Argentine ant) |
| T01081 | nvi | Nasonia vitripennis (jewel wasp) |
| T01046 | tca | Tribolium castaneum (red flour beetle) |
| T04899 | dpa | Dendroctonus ponderosae (mountain pine beetle) |
| T04922 | nvl | Nicrophorus vespilloides |
| T02817 | bmor | Bombyx mori (domestic silkworm) |
| T04344 | dpl | Danaus plexippus (monarch butterfly) |
| T03915 | pxy | Plutella xylostella (diamondback moth) |
| T01076 | api | Acyrthosiphon pisum (pea aphid) |
| T04900 | dnx | Diuraphis noxia (Russian wheat aphid) |
| T01223 | phu | Pediculus humanus corporis (human body louse) |
| T04347 | dpx | Daphnia pulex (common water flea) |
| T01131 | isc | Ixodes scapularis (black-legged tick) |
| T04901 | tut | Tetranychus urticae (two-spotted spider mite) |
| T00019 | cel | Caenorhabditis elegans (nematode) |
| T01054 | cbr | Caenorhabditis briggsae |
| T04867 | nai | Necator americanus |
| T01050 | bmy | Brugia malayi (filaria) |
| T02664 | loa | Loa loa (eye worm) |
| T01609 | tsp | Trichinella spiralis |
| T03272 | hro | Helobdella robusta |
| T03273 | lgi | Lottia gigantea (owl limpet) |
| T03920 | crg | Crassostrea gigas (Pacific oyster) |
| T04127 | obi | Octopus bimaculoides |
| T04921 | lak | Lingula anatina |
| T01095 | smm | Schistosoma mansoni |
| T04902 | ovi | Opisthorchis viverrini |
| T01037 | nve | Nematostella vectensis (sea anemone) |
| T04352 | adf | Acropora digitifera (stony coral) |
| T01080 | hmg | Hydra vulgaris |
| T01069 | tad | Trichoplax adhaerens |
| T02284 | aqu | Amphimedon queenslandica (sponge) |
| T00041 | ath | Arabidopsis thaliana (thale cress) |
| T01578 | aly | Arabidopsis lyrata (lyrate rockcress) |
| T02984 | crb | Capsella rubella |
| T02985 | eus | Eutrema salsugineum |
| T03449 | brp | Brassica rapa (field mustard) |
| T04128 | bna | Brassica napus (rape) |
| T04124 | boe | Brassica oleracea (wild cabbage) |
| T04125 | thj | Tarenaya hassleriana (spider flower) |
| T02983 | cit | Citrus sinensis (Valencia orange) |
| T02982 | cic | Citrus clementina (mandarin orange) |
| T02994 | tcc | Theobroma cacao (cacao) |
| T04129 | gra | Gossypium raimondii |
| T04793 | ghi | Gossypium hirsutum (upland cotton) |
| T03547 | egr | Eucalyptus grandis (rose gum) |
| T01710 | gmx | Glycine max (soybean) |
| T03093 | pvu | Phaseolus vulgaris (common bean) |
| T04126 | vra | Vigna radiata (mung bean) |
| T04660 | var | Vigna angularis (adzuki bean) |
| T04868 | ccaj | Cajanus cajan (pigeon pea) |
| T01716 | mtr | Medicago truncatula (barrel medic) |
| T02819 | cam | Cicer arietinum (chickpea) |
| T04300 | adu | Arachis duranensis |
| T04301 | aip | Arachis ipaensis |
| T04348 | lja | Lotus japonicus |
| T04664 | lang | Lupinus angustifolius (narrow-leaved blue lupine) |
| T02666 | fve | Fragaria vesca (woodland strawberry) |
| T03092 | pper | Prunus persica (peach) |
| T03196 | pmum | Prunus mume (Japanese apricot) |
| T03194 | mdm | Malus domestica (apple) |
| T03446 | pxb | Pyrus x bretschneideri (Chinese white pear) |
| T04794 | zju | Ziziphus jujuba (Chinese jujube) |
| T02486 | csv | Cucumis sativus (cucumber) |
| T03195 | cmo | Cucumis melo (muskmelon) |
| T01087 | rcu | Ricinus communis (castor bean) |
| T03922 | jcu | Jatropha curcas |
| T01077 | pop | Populus trichocarpa (black cottonwood) |
| T01084 | vvi | Vitis vinifera (wine grape) |
| T02665 | sly | Solanum lycopersicum (tomato) |
| T04130 | spen | Solanum pennellii |
| T02981 | sot | Solanum tuberosum (potato) |
| T04646 | cann | Capsicum annuum |
| T04643 | nta | Nicotiana tabacum (common tobacco) |
| T04663 | ini | Ipomoea nil (Japanese morning glory) |
| T04135 | sind | Sesamum indicum (sesame) |
| T03548 | bvg | Beta vulgaris (sugar beet) |
| T04131 | nnu | Nelumbo nucifera (sacred lotus) |
| T01015 | osa | Oryza sativa japonica (Japanese rice) (RefSeq) |
| T02163 | dosa | Oryza sativa japonica (Japanese rice) (RAPDB) |
| T02995 | obr | Oryza brachyantha (malo sina) |
| T01717 | bdi | Brachypodium distachyon |
| T04345 | ats | Aegilops tauschii (wheat D) |
| T01086 | sbi | Sorghum bicolor (sorghum) |
| T01088 | zma | Zea mays (maize) |
| T02818 | sita | Setaria italica (foxtail millet) |
| T03274 | pda | Phoenix dactylifera (date palm) |
| T03921 | egu | Elaeis guineensis (African oil palm) |
| T03447 | mus | Musa acuminata (wild Malaysian banana) |
| T02990 | atr | Amborella trichopoda |
| T01496 | smo | Selaginella moellendorffii |
| T01041 | ppp | Physcomitrella patens subsp. patens |
| T01039 | cre | Chlamydomonas reinhardtii |
| T01330 | vcn | Volvox carteri f. nagariensis |
| T01029 | olu | Ostreococcus lucimarinus |
| T01358 | ota | Ostreococcus tauri |
| T03089 | bpg | Bathycoccus prasinos |
| T02695 | mis | Micromonas commoda |
| T02696 | mpp | Micromonas pusilla |
| T02914 | csl | Coccomyxa subellipsoidea |
| T02924 | cvr | Chlorella variabilis |
| T04132 | apro | Auxenochlorella protothecoides |
| T00175 | cme | Cyanidioschyzon merolae |
| T02926 | gsl | Galdieria sulphuraria |
| T02916 | ccp | Chondrus crispus (carragheen) |
| T00005 | sce | Saccharomyces cerevisiae (budding yeast) |
| T00167 | ago | Ashbya gossypii (Eremothecium gossypii) |
| T02237 | erc | Eremothecium cymbalariae |
| T01025 | kla | Kluyveromyces lactis |
| T01117 | lth | Lachancea thermotolerans |
| T01049 | vpo | Vanderwaltozyma polyspora |
| T01118 | zro | Zygosaccharomyces rouxii |
| T01024 | cgr | Candida glabrata |
| T02233 | ncs | Naumovozyma castellii |
| T02234 | ndi | Naumovozyma dairenensis |
| T02235 | tpf | Tetrapisispora phaffii |
| T02489 | tbl | Tetrapisispora blattae |
| T02236 | tdl | Torulaspora delbrueckii |
| T02487 | kaf | Kazachstania africana |
| T01092 | ppa | Komagataella phaffii |
| T01026 | dha | Debaryomyces hansenii |
| T01023 | pic | Scheffersomyces stipitis |
| T01150 | pgu | Meyerozyma guilliermondii |
| T03101 | spaa | Spathaspora passalidarum |
| T01116 | lel | Lodderomyces elongisporus |
| T00189 | cal | Candida albicans |
| T01115 | ctp | Candida tropicalis |
| T02488 | cot | Candida orthopsilosis |
| T01140 | cdu | Candida dubliniensis |
| T03099 | cten | Candida tenuis |
| T01033 | yli | Yarrowia lipolytica |
| T01149 | clu | Clavispora lusitaniae |
| T04850 | caur | Candida auris |
| T01034 | ncr | Neurospora crassa |
| T03451 | nte | Neurospora tetrasperma |
| T01610 | smp | Sordaria macrospora |
| T01048 | pan | Podospora anserina |
| T02228 | ttt | Thielavia terrestris |
| T02231 | mtm | Thermothelomyces thermophila |
| T03100 | cthr | Chaetomium thermophilum |
| T01027 | mgr | Magnaporthe oryzae |
| T03102 | tmn | Phaeoacremonium minimum |
| T01038 | fgr | Fusarium graminearum |
| T03456 | fpu | Fusarium pseudograminearum |
| T04869 | fvr | Fusarium verticillioides |
| T04882 | fox | Fusarium oxysporum |
| T01612 | nhe | Nectria haematococca |
| T02991 | tre | Trichoderma reesei |
| T03104 | maw | Metarhizium acridum |
| T03107 | maj | Metarhizium robertsii |
| T03108 | cmt | Cordyceps militaris |
| T02227 | val | Verticillium alfalfae |
| T03450 | vda | Verticillium dahliae |
| T04796 | cfj | Colletotrichum fioriniae |
| T03103 | ela | Eutypa lata |
| T04924 | pfy | Pestalotiopsis fici |
| T01071 | ssl | Sclerotinia sclerotiorum |
| T01072 | bfu | Botrytis cinerea |
| T03105 | mbe | Marssonina brunnea |
| T04865 | psco | Phialocephala scopiformis |
| T04883 | glz | Glarea lozoyensis |
| T01016 | ani | Aspergillus nidulans |
| T01017 | afm | Aspergillus fumigatus |
| T01018 | aor | Aspergillus oryzae |
| T01030 | ang | Aspergillus niger |
| T01090 | afv | Aspergillus flavus |
| T01148 | act | Aspergillus clavatus |
| T01070 | nfi | Aspergillus fischeri |
| T01091 | pcs | Penicillium rubens |
| T04849 | pdp | Penicillium digitatum |
| T01114 | cim | Coccidioides immitis |
| T01332 | cpw | Coccidioides posadasii |
| T02230 | pbl | Paracoccidioides lutzii Pb01 |
| T03549 | pbn | Paracoccidioides brasiliensis Pb18 |
| T01132 | ure | Uncinocarpus reesii |
| T01611 | abe | Trichophyton benhamiae |
| T01615 | tve | Trichophyton verrucosum |
| T02229 | aje | Histoplasma capsulatum |
| T01161 | pno | Parastagonospora nodorum |
| T01613 | pte | Pyrenophora teres |
| T03110 | bze | Bipolaris zeicola |
| T03124 | bsc | Bipolaris sorokiniana |
| T03125 | bor | Bipolaris oryzae |
| T02285 | ztr | Zymoseptoria tritici |
| T03109 | pfj | Pseudocercospora fijiensis |
| T03106 | bcom | Baudoinia panamericana |
| T03126 | npa | Neofusicoccum parvum |
| T01282 | tml | Tuber melanosporum |
| T00076 | spo | Schizosaccharomyces pombe (fission yeast) |
| T00243 | cne | Cryptococcus neoformans JEC21 |
| T01040 | cnb | Cryptococcus neoformans var. neoformans B-3501A |
| T02232 | cgi | Cryptococcus gattii |
| T03139 | tms | Tremella mesenterica |
| T01162 | ppl | Postia placenta |
| T04795 | tvs | Trametes versicolor |
| T03133 | dsq | Dichomitus squalens |
| T03128 | pco | Phanerochaete carnosa |
| T03127 | shs | Stereum hirsutum |
| T03455 | hir | Heterobasidion irregulare |
| T03131 | psq | Punctularia strigosozonata |
| T03129 | adl | Auricularia subglabra |
| T03132 | fme | Fomitiporia mediterranea |
| T03130 | gtr | Gloeophyllum trabeum |
| T01044 | lbc | Laccaria bicolor |
| T01089 | mpr | Moniliophthora perniciosa |
| T03137 | mrr | Moniliophthora roreri |
| T01275 | cci | Coprinopsis cinerea |
| T01331 | scm | Schizophyllum commune |
| T03136 | abp | Agaricus bisporus var. burnettii JB137-S8 |
| T03140 | abv | Agaricus bisporus var. bisporus H97 |
| T03134 | cput | Coniophora puteana |
| T03135 | sla | Serpula lacrymans |
| T03142 | wse | Wallemia mellicola |
| T03457 | wic | Wallemia ichthyophaga |
| T01021 | uma | Ustilago maydis |
| T03141 | pfp | Anthracocystis flocculosa |
| T01043 | mgl | Malassezia globosa |
| T02226 | pgr | Puccinia graminis |
| T03138 | mlr | Melampsora larici-populina |
| T00105 | ecu | Encephalitozoon cuniculi |
| T02238 | ein | Encephalitozoon intestinalis |
| T02287 | ehe | Encephalitozoon hellem |
| T03458 | ero | Encephalitozoon romaleae |
| T01614 | nce | Nosema ceranae |
| T01042 | mbr | Monosiga brevicollis |
| T04136 | sre | Salpingoeca rosetta |
| T00245 | ddi | Dictyostelium discoideum (cellular slime mold) |
| T02090 | dpp | Dictyostelium purpureum (cellular slime mold) |
| T02668 | dfa | Dictyostelium fasciculatum (cellular slime mold) |
| T00238 | ehi | Entamoeba histolytica |
| T01083 | edi | Entamoeba dispar |
| T04133 | eiv | Entamoeba invadens |
| T02667 | acan | Acanthamoeba castellanii |
| T00095 | pfa | Plasmodium falciparum 3D7 |
| T01051 | pfd | Plasmodium falciparum Dd2 |
| T01052 | pfh | Plasmodium falciparum HB3 |
| T01035 | pyo | Plasmodium yoelii |
| T01108 | pcb | Plasmodium chabaudi |
| T01111 | pbe | Plasmodium berghei |
| T01094 | pkn | Plasmodium knowlesi |
| T01073 | pvx | Plasmodium vivax |
| T02490 | pcy | Plasmodium cynomolgi |
| T00253 | tan | Theileria annulata |
| T00254 | tpv | Theileria parva |
| T03460 | tot | Theileria orientalis |
| T02820 | beq | Theileria equi |
| T01085 | bbo | Babesia bovis |
| T00168 | cpv | Cryptosporidium parvum |
| T00210 | cho | Cryptosporidium hominis |
| T01093 | tgo | Toxoplasma gondii |
| T01020 | tet | Tetrahymena thermophila |
| T01055 | ptm | Paramecium tetraurelia |
| T04349 | smin | Symbiodinium minutum |
| T01075 | pti | Phaeodactylum tricornutum |
| T04784 | fcy | Fragilariopsis cylindrus |
| T01078 | tps | Thalassiosira pseudonana |
| T04134 | aaf | Aureococcus anophagefferens |
| T02917 | ngd | Nannochloropsis gaditana |
| T01333 | pif | Phytophthora infestans |
| T03459 | psoj | Phytophthora sojae |
| T04137 | spar | Saprolegnia parasitica |
| T02915 | ehx | Emiliania huxleyi |
| T02925 | gtt | Guillardia theta |
| T01013 | tbr | Trypanosoma brucei |
| T01012 | tcr | Trypanosoma cruzi |
| T01014 | lma | Leishmania major |
| T01112 | lif | Leishmania infantum |
| T02289 | ldo | Leishmania donovani |
| T02288 | lmi | Leishmania mexicana |
| T01113 | lbz | Leishmania braziliensis |
| T01241 | ngr | Naegleria gruberi |
| T01022 | tva | Trichomonas vaginalis |
| T01047 | gla | Giardia lamblia |
Organism group: Eukaryotes