KEGG Modules
Pathway module
Energy metabolism
Carbon fixation
Nitrogen metabolism
M00530 Dissimilatory nitrate reduction, nitrate => ammonia [PATH: cfi00910]
Methane metabolism
Sulfur metabolism
Carbohydrate and lipid metabolism
Central carbohydrate metabolism
M00001 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH: cfi00010]
M00002 Glycolysis, core module involving three-carbon compounds [PATH: cfi00010]
M00307 Pyruvate oxidation, pyruvate => acetyl-CoA [PATH: cfi00010 cfi00020 cfi00620]
M00009 Citrate cycle (TCA cycle, Krebs cycle) [PATH: cfi00020]
M00010 Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH: cfi00020]
M00011 Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH: cfi00020]
M00004 Pentose phosphate pathway (Pentose phosphate cycle) [PATH: cfi00030]
M00006 Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH: cfi00030]
M00007 Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH: cfi00030]
M00005 PRPP biosynthesis, ribose 5P => PRPP [PATH: cfi00030 cfi00230]
Other carbohydrate metabolism
Fatty acid metabolism
Lipid metabolism
Lipopolysaccharide metabolism
Sugar metabolism
Glycan metabolism
Glycosaminoglycan metabolism
Terpenoid backbone biosynthesis
Sterol biosynthesis
Other terpenoid biosynthesis
Nucleotide and amino acid metabolism
Purine metabolism
M00048 Inosine monophosphate biosynthesis, PRPP + glutamine => IMP [PATH: cfi00230]
M00049 Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH: cfi00230]
M00050 Guanine ribonucleotide biosynthesis IMP => GDP,GTP [PATH: cfi00230]
Pyrimidine metabolism
M00052 Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH: cfi00240]
M00053 Pyrimidine deoxyribonuleotide biosynthesis, CDP/CTP => dCDP/dCTP,dTDP/dTTP [PATH: cfi00240]
Serine and threonine metabolism
M00020 Serine biosynthesis, glycerate-3P => serine [PATH: cfi00260]
M00018 Threonine biosynthesis, apartate => homoserine => threonine [PATH: cfi00260]
Cysteine and methionine metabolism
Branched-chain amino acid metabolism
M00019 Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH: cfi00290]
M00570 Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH: cfi00290]
M00432 Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH: cfi00290]
Lysine metabolism
Arginine and proline metabolism
Histidine metabolism
Aromatic amino acid metabolism
Other amino acid metabolism
Cofactor and vitamin biosynthesis
Polyamine biosynthesis
Phenylpropanoid and flavonoid biosynthesis
Alkaloid and other secondary metabolite biosynthesis
Secondary metabolism
Structural complex
Energy metabolism
Photosynthesis
ATP synthesis
Carbohydrate and lipid metabolism
Carbohydrate metabolism
Glycan metabolism
Genetic information processing
DNA polymerase
Replication system
Repair system
RNA polymerase
Spliceosome
RNA processing
Ribosome
Proteasome
Ubiquitin system
Protein processing
Environmental information processing
Mineral and organic ion transport system
Saccharide and polyol transport system
Phosphate and amino acid transport system
M00222 Phosphate transport system [BR:ko02000][PATH: cfi02010]
M00233 Glutamate transport system [BR:ko02000][PATH: cfi02010]
M00237 Branched-chain amino acid transport system [BR:ko02000][PATH: cfi02010]
M00238 D-Methionine transport system [BR:ko02000][PATH: cfi02010]
M00236 Putative polar amino acid transport system [BR:ko02000]
Peptide and nickel transport system
Metallic cation, iron-siderophore and vitamin B12 transport system
ABC-2 type and other transport systems
M00250 Lipopolysaccharide transport system [BR:ko02000][PATH: cfi02010]
M00252 Lipooligosaccharide transport system [BR:ko02000][PATH: cfi02010]
M00256 Cell division transport system [BR:ko02000][PATH: cfi02010]
M00248 Putative antibiotic transport system [BR:ko02000][PATH: cfi02010]
M00258 Putative ABC transport system [BR:ko02000]
Phosphotransferase system (PTS)
Bacterial secretion system
Functional set
Metabolism
Aminoacyl tRNA
Nucleotide sugar
Environmental information processing
Two-component regulatory system
M00443 SenX3-RegX3 (phosphate starvation response) two-component regulatory system [BR:ko02022][PATH: cfi02020]
M00461 MtrB-MtrA (osmotic stress response) two-component regulatory system [BR:ko02022][PATH: cfi02020]
Signature module
Genotypic signature
Metabolic capacity
Pathogenicity
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