KEGG Modules

Energy metabolism

 Carbon fixation

 Nitrogen metabolism

 Methane metabolism

 Sulfur metabolism
Carbohydrate and lipid metabolism

 Central carbohydrate metabolism
M00001 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH: eat00010]
M00002 Glycolysis, core module involving three-carbon compounds [PATH: eat00010]
M00003 Gluconeogenesis, oxaloacetate => fructose-6P [PATH: eat00010 eat00020]
M00307 Pyruvate oxidation, pyruvate => acetyl-CoA [PATH: eat00010 eat00020 eat00620]
M00010 Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH: eat00020]
M00007 Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH: eat00030]
M00005 PRPP biosynthesis, ribose 5P => PRPP [PATH: eat00030 eat00230]


 Other carbohydrate metabolism
M00012 Glyoxylate cycle [PATH: eat00630]


 Fatty acid metabolism
M00083 Fatty acid biosynthesis, elongation [PATH: eat00061]
M00086 beta-Oxidation, acyl-CoA synthesis [PATH: eat00071]


 Lipid metabolism
M00093 Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH: eat00564]


 Lipopolysaccharide metabolism

 Sugar metabolism
M00549 Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH: eat00520]


 Glycan metabolism

 Glycosaminoglycan metabolism

 Terpenoid backbone biosynthesis

 Sterol biosynthesis

 Other terpenoid biosynthesis
Nucleotide and amino acid metabolism

 Purine metabolism
M00048 Inosine monophosphate biosynthesis, PRPP + glutamine => IMP [PATH: eat00230]
M00049 Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH: eat00230]
M00050 Guanine ribonucleotide biosynthesis IMP => GDP,GTP [PATH: eat00230]


 Pyrimidine metabolism
M00052 Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH: eat00240]


 Serine and threonine metabolism

 Cysteine and methionine metabolism
M00021 Cysteine biosynthesis, serine => cysteine [PATH: eat00270]
M00034 Methionine salvage pathway [PATH: eat00270]


 Branched-chain amino acid metabolism

 Lysine metabolism

 Arginine and proline metabolism
M00028 Ornithine biosynthesis, glutamate => ornithine [PATH: eat00330]


 Histidine metabolism
M00026 Histidine biosynthesis, PRPP => histidine [PATH: eat00340]


 Aromatic amino acid metabolism
M00022 Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH: eat00400]
M00023 Tryptophan biosynthesis, chorismate => tryptophan [PATH: eat00400]


 Other amino acid metabolism

 Cofactor and vitamin biosynthesis
M00115 NAD biosynthesis, aspartate => NAD [PATH: eat00760]
M00119 Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH: eat00770]
M00120 Coenzyme A biosynthesis, pantothenate => CoA [PATH: eat00770]
M00140 C1-unit interconversion, prokaryotes [PATH: eat00670]


 Polyamine biosynthesis
M00135 GABA biosynthesis, eukaryotes, putrescine => GABA [PATH: eat00330]


 Phenylpropanoid and flavonoid biosynthesis

 Alkaloid and other secondary metabolite biosynthesis
Secondary metabolism

 Aromatics degradataion

Energy metabolism

 Photosynthesis

 ATP synthesis
M00151 Cytochrome bc1 complex respiratory unit [PATH: eat00190]
M00155 Cytochrome c oxidase, prokaryotes [PATH: eat00190]
M00153 Cytochrome d ubiquinol oxidase [PATH: eat00190]
M00157 F-type ATPase, bacteria [PATH: eat00190]

Carbohydrate and lipid metabolism

 Carbohydrate metabolism

 Glycan metabolism
Genetic information processing

 DNA polymerase
M00260 DNA polymerase III complex, bacteria [BR:ko03032 ko03400][PATH: eat03030 eat03430 eat03440]


 Replication system

 Repair system

 RNA polymerase
M00183 RNA polymerase, bacteria [BR:ko03021 ko03400][PATH: eat03020]


 Spliceosome

 RNA processing

 Ribosome
M00178 Ribosome, bacteria [BR:ko03011][PATH: eat03010]


 Proteasome

 Ubiquitin system

 Protein processing
Environmental information processing

 Mineral and organic ion transport system
M00190 Iron(III) transport system [BR:ko02000][PATH: eat02010]
M00299 Spermidine/putrescine transport system [BR:ko02000][PATH: eat02010]
M00209 Osmoprotectant transport system [BR:ko02000][PATH: eat02010]


 Saccharide and polyol transport system
M00196 Multiple sugar transport system [BR:ko02000][PATH: eat02010]
M00212 Ribose transport system [BR:ko02000][PATH: eat02010]
M00197 Putative fructooligosaccharide transport system [BR:ko02000]
M00198 Putative sn-glycerol-phosphate transport system [BR:ko02000][PATH: eat02010]
M00491 Putative arabinogalactan oligomer transport system [BR:ko02000][PATH: eat02010]
M00221 Putative simple sugar transport system [BR:ko02000]
M00211 Putative ABC transport system [BR:ko02000]


 Phosphate and amino acid transport system
M00222 Phosphate transport system [BR:ko02000][PATH: eat02010]
M00238 D-Methionine transport system [BR:ko02000][PATH: eat02010]


 Peptide and nickel transport system
M00439 Oligopeptide transport system [BR:ko02000][PATH: eat02010]


 Metallic cation, iron-siderophore and vitamin B12 transport system
M00240 Iron complex transport system [BR:ko02000][PATH: eat02010]
M00242 Zinc transport system [BR:ko02000][PATH: eat02010]
M00582 Energy-coupling factor transport system [BR:ko02000][PATH: eat02010]


 ABC-2 type and other transport systems
M00251 Teichoic acid transport system [BR:ko02000][PATH: eat02010]
M00256 Cell division transport system [BR:ko02000][PATH: eat02010]
M00248 Putative antibiotic transport system [BR:ko02000][PATH: eat02010]
M00258 Putative ABC transport system [BR:ko02000]
M00254 ABC-2 type transport system [BR:ko02000]


 Phosphotransferase system (PTS)
M00265 PTS system, glucose-specific II component [BR:ko02000][PATH: eat00010 eat02060]
M00266 PTS system, maltose and glucose-specific II component [BR:ko02000][PATH: eat00010 eat00500 eat02060]
M00282 PTS system, D-glucosamine-specific II component [BR:ko02000][PATH: eat00520 eat02060]
M00271 PTS system, beta-glucosides-specific II component [BR:ko02000][PATH: eat02060]
M00270 PTS system, trehalose-specific II component [BR:ko02000][PATH: eat00500 eat02060]
M00273 PTS system, fructose-specific II component [BR:ko02000][PATH: eat00051 eat02060]
M00274 PTS system, mannitol-specific II component [BR:ko02000][PATH: eat00051 eat02060]
M00281 PTS system, lactose-specific II component [BR:ko02000][PATH: eat00052 eat02060]
M00275 PTS system, cellobiose-specific II component [BR:ko02000][PATH: eat02060]


 Bacterial secretion system
M00336 Twin-arginine translocation (Tat) system [BR:ko02044][PATH: eat03070]

Metabolism

 Aminoacyl tRNA
M00360 Aminoacyl-tRNA biosynthesis, prokaryotes [PATH: eat00970]


 Nucleotide sugar
Environmental information processing

 Two-component regulatory system
M00434 PhoR-PhoB (phosphate starvation response) two-component regulatory system [BR:ko02022][PATH: eat02020]
M00448 CssS-CssR (secretion stress response) two-component regulatory system [BR:ko02022][PATH: eat02020]
M00458 ResE-ResD (aerobic and anaerobic respiration) two-component regulatory system [BR:ko02022][PATH: eat02020]
M00459 VicK-VicR (cell wall metabolism) two-component regulatory system [BR:ko02022][PATH: eat02020]
M00478 DegS-DegU (multicellular behavior control) two-component regulatory system [BR:ko02022][PATH: eat02020]
M00481 LiaS-LiaR (cell wall stress response) two-component regulatory system [BR:ko02022][PATH: eat02020]

Genotypic signature

 Pathogenicity