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KEGG Modules
Pathway module
Energy metabolism
Carbon fixation
Nitrogen metabolism
M00530 Dissimilatory nitrate reduction, nitrate => ammonia [PATH: eoj00910]
Methane metabolism
Sulfur metabolism
Carbohydrate and lipid metabolism
Central carbohydrate metabolism
M00001 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH: eoj00010]
M00002 Glycolysis, core module involving three-carbon compounds [PATH: eoj00010]
M00003 Gluconeogenesis, oxaloacetate => fructose-6P [PATH: eoj00010 eoj00020]
M00307 Pyruvate oxidation, pyruvate => acetyl-CoA [PATH: eoj00010 eoj00020 eoj00620]
M00009 Citrate cycle (TCA cycle, Krebs cycle) [PATH: eoj00020]
M00010 Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH: eoj00020]
M00011 Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH: eoj00020]
M00004 Pentose phosphate pathway (Pentose phosphate cycle) [PATH: eoj00030]
M00006 Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH: eoj00030]
M00007 Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH: eoj00030]
M00005 PRPP biosynthesis, ribose 5P => PRPP [PATH: eoj00030 eoj00230]
M00008 Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH: eoj00030]
Other carbohydrate metabolism
Fatty acid metabolism
Lipid metabolism
M00093 Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH: eoj00564]
Lipopolysaccharide metabolism
Sugar metabolism
Glycan metabolism
Glycosaminoglycan metabolism
Terpenoid backbone biosynthesis
M00096 C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH: eoj00900]
M00364 C10-C20 isoprenoid biosynthesis, bacteria [PATH: eoj00900]
Sterol biosynthesis
Other terpenoid biosynthesis
Nucleotide and amino acid metabolism
Purine metabolism
M00048 Inosine monophosphate biosynthesis, PRPP + glutamine => IMP [PATH: eoj00230]
M00049 Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH: eoj00230]
M00050 Guanine ribonucleotide biosynthesis IMP => GDP,GTP [PATH: eoj00230]
Pyrimidine metabolism
M00051 Uridine monophosphate biosynthesis, glutamine (+ PRPP) => UMP [PATH: eoj00240]
M00052 Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH: eoj00240]
M00053 Pyrimidine deoxyribonuleotide biosynthesis, CDP/CTP => dCDP/dCTP,dTDP/dTTP [PATH: eoj00240]
Serine and threonine metabolism
M00020 Serine biosynthesis, glycerate-3P => serine [PATH: eoj00260]
M00018 Threonine biosynthesis, apartate => homoserine => threonine [PATH: eoj00260]
M00555 Betaine biosynthesis, choline => betaine [PATH: eoj00260]
Cysteine and methionine metabolism
M00021 Cysteine biosynthesis, serine => cysteine [PATH: eoj00270]
M00017 Methionine biosynthesis, apartate => homoserine => methionine [PATH: eoj00270]
Branched-chain amino acid metabolism
M00019 Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH: eoj00290]
M00570 Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH: eoj00290]
M00432 Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH: eoj00290]
Lysine metabolism
Arginine and proline metabolism
Histidine metabolism
Aromatic amino acid metabolism
M00022 Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH: eoj00400]
M00023 Tryptophan biosynthesis, chorismate => tryptophan [PATH: eoj00400]
M00024 Phenylalanine biosynthesis, chorismate => phenylalanine [PATH: eoj00400]
M00025 Tyrosine biosynthesis, chorismate => tyrosine [PATH: eoj00400]
M00533 Homoprotocatechuate degradation, homoprotocatechuate => 2-oxohept-3-enedioate [PATH: eoj00350]
M00545 Trans-cinnamate degradation, trans-cinnamate => 2-oxopent-4-enoate + fumarate [PATH: eoj00360]
Other amino acid metabolism
Cofactor and vitamin biosynthesis
M00127 Thiamine biosynthesis, AIR => thiamine-P/thiamine-2P [PATH: eoj00730]
M00124 Pyridoxal biosynthesis, erythrose-4P => pyridoxal-5P [PATH: eoj00750]
M00115 NAD biosynthesis, aspartate => NAD [PATH: eoj00760]
M00119 Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH: eoj00770]
M00120 Coenzyme A biosynthesis, pantothenate => CoA [PATH: eoj00770]
M00572 Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP [PATH: eoj00780]
M00123 Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH: eoj00780]
M00126 Tetrahydrofolate biosynthesis, GTP => THF [PATH: eoj00790 eoj00670]
M00121 Heme biosynthesis, glutamate => protoheme/siroheme [PATH: eoj00860]
M00550 Ascorbate degradation, ascorbate => D-xylulose-5P [PATH: eoj00053]
M00117 Ubiquinone biosynthesis, prokaryotes, chorismate => ubiquinone [PATH: eoj00130]
M00118 Glutathione biosynthesis, glutamate => glutathione [PATH: eoj00480]
Polyamine biosynthesis
M00133 Polyamine biosynthesis, arginine => agmatine => putrescine => spermidine [PATH: eoj00330]
M00136 GABA biosynthesis, prokaryotes, putrescine => GABA [PATH: eoj00330]
Phenylpropanoid and flavonoid biosynthesis
Alkaloid and other secondary metabolite biosynthesis
Secondary metabolism
Structural complex
Energy metabolism
Photosynthesis
ATP synthesis
Carbohydrate and lipid metabolism
Carbohydrate metabolism
Glycan metabolism
Genetic information processing
DNA polymerase
Replication system
Repair system
RNA polymerase
Spliceosome
RNA processing
Ribosome
Proteasome
Ubiquitin system
Protein processing
Environmental information processing
Mineral and organic ion transport system
M00185 Sulfate transport system [BR:ko02000][PATH: eoj02010]
M00189 Molybdate transport system [BR:ko02000][PATH: eoj02010]
M00435 Taurine transport system [BR:ko02000][PATH: eoj02010]
M00436 Sulfonate transport system [BR:ko02000][PATH: eoj02010]
M00191 Thiamine transport system [BR:ko02000][PATH: eoj02010]
M00299 Spermidine/putrescine transport system [BR:ko02000][PATH: eoj02010]
M00300 Putrescine transport system [BR:ko02000][PATH: eoj02010]
M00193 Putative spermidine/putrescine transport system [BR:ko02000]
M00208 Glycine betaine/proline transport system [BR:ko02000][PATH: eoj02010]
M00209 Osmoprotectant transport system [BR:ko02000][PATH: eoj02010]
M00192 Putative thiamine transport system [BR:ko02000]
Saccharide and polyol transport system
M00213 L-Arabinose transport system [BR:ko02000][PATH: eoj02010]
M00214 Methyl-galactoside transport system [BR:ko02000][PATH: eoj02010]
M00215 D-Xylose transport system [BR:ko02000][PATH: eoj02010]
M00219 AI-2 transport system [BR:ko02000][PATH: eoj02010]
M00212 Ribose transport system [BR:ko02000][PATH: eoj02010]
M00198 Putative sn-glycerol-phosphate transport system [BR:ko02000][PATH: eoj02010]
M00491 Putative arabinogalactan oligomer transport system [BR:ko02000][PATH: eoj02010]
M00221 Putative simple sugar transport system [BR:ko02000]
M00210 Putative ABC transport system [BR:ko02000]
M00211 Putative ABC transport system [BR:ko02000]
Phosphate and amino acid transport system
Peptide and nickel transport system
Metallic cation, iron-siderophore and vitamin B12 transport system
ABC-2 type and other transport systems
M00320 Lipopolysaccharide export system [BR:ko02000][PATH: eoj02010]
M00255 Lipoprotein-releasing system [BR:ko02000][PATH: eoj02010]
M00259 Heme transport system [BR:ko02000][PATH: eoj02010]
M00256 Cell division transport system [BR:ko02000][PATH: eoj02010]
M00248 Putative antibiotic transport system [BR:ko02000][PATH: eoj02010]
M00258 Putative ABC transport system [BR:ko02000]
M00254 ABC-2 type transport system [BR:ko02000]
Phosphotransferase system (PTS)
M00265 PTS system, glucose-specific II component [BR:ko02000][PATH: eoj00010 eoj02060]
M00267 PTS system, N-acetylglucosamine-specific II component [BR:ko02000][PATH: eoj00520 eoj02060]
M00266 PTS system, maltose and glucose-specific II component [BR:ko02000][PATH: eoj00010 eoj00500 eoj02060]
M00271 PTS system, beta-glucosides-specific II component [BR:ko02000][PATH: eoj02060]
M00272 PTS system, arbutin-, cellobiose-, and salicin-specific II component [BR:ko02000][PATH: eoj00010 eoj02060]
M00303 PTS system, N-acetylmuramic acid-specific II component [BR:ko02000][PATH: eoj02060]
M00268 PTS system, arbutin-like II component [BR:ko02000][PATH: eoj00010 eoj02060]
M00273 PTS system, fructose-specific II component [BR:ko02000][PATH: eoj00051 eoj02060]
M00306 PTS system, fructose-specific II-like component [BR:ko02000]
M00274 PTS system, mannitol-specific II component [BR:ko02000][PATH: eoj00051 eoj02060]
M00305 PTS system, 2-O-A-mannosyl-D-glycerate-specific II component [BR:ko02000][PATH: eoj02060]
M00275 PTS system, cellobiose-specific II component [BR:ko02000][PATH: eoj02060]
M00280 PTS system, glucitol/sorbitol-specific II component [BR:ko02000][PATH: eoj00051 eoj02060]
M00279 PTS system, galactitol-specific II component [BR:ko02000][PATH: eoj00052 eoj02060]
M00276 PTS system, mannose-specific II component [BR:ko02000][PATH: eoj00051 eoj02060]
M00277 PTS system, N-acetylgalactosamine-specific II component [BR:ko02000][PATH: eoj00052 eoj02060]
M00287 PTS system, galactosamine-specific II component [BR:ko02000][PATH: eoj00052 eoj02060]
M00283 PTS system, ascorbate-specific II component [BR:ko02000][PATH: eoj00053 eoj02060]
Bacterial secretion system
Functional set
Metabolism
Aminoacyl tRNA
Nucleotide sugar
Environmental information processing
Two-component regulatory system
M00434 PhoR-PhoB (phosphate starvation response) two-component regulatory system [BR:ko02022][PATH: eoj02020]
M00444 PhoQ-PhoP (magnesium transport) two-component regulatory system [BR:ko02022][PATH: eoj02020]
M00445 EnvZ-OmpR (osmotic stress response) two-component regulatory system [BR:ko02022][PATH: eoj02020]
M00446 RstB-RstA two-component regulatory system [BR:ko02022][PATH: eoj02020]
M00447 CpxA-CpxR (envelope stress response) two-component regulatory system [BR:ko02022][PATH: eoj02020]
M00449 CreC-CreB (phosphate regulation) two-component regulatory system [BR:ko02022][PATH: eoj02020]
M00450 BaeS-BaeR (envelope stress response) two-component regulatory system [BR:ko02022][PATH: eoj02020]
M00451 BasS-BasR (antimicrobial peptide resistance) two-component regulatory system [BR:ko02022][PATH: eoj02020]
M00452 CusS-CusR (copper tolerance) two-component regulatory system [BR:ko02022][PATH: eoj02020]
M00453 QseC-QseB (quorum sensing) two-component regulatory system [BR:ko02022][PATH: eoj02020]
M00454 KdpD-KdpE (potassium transport) two-component regulatory system [BR:ko02022][PATH: eoj02020]
M00455 TorS-TorR (trimethylamine N-oxide respiration) two-component regulatory system [BR:ko02022][PATH: eoj02020]
M00456 ArcB-ArcA (anoxic redox control) two-component regulatory system [BR:ko02022][PATH: eoj02020]
M00471 NarX-NarL (nitrate respiration) two-component regulatory system [BR:ko02022][PATH: eoj02020]
M00472 NarQ-NarP (nitrate respiration) two-component regulatory system [BR:ko02022][PATH: eoj02020]
M00473 UhpB-UhpA (hexose phosphates uptake) two-component regulatory system [BR:ko02022][PATH: eoj02020]
M00474 RcsC-RcsD-RcsB (capsule synthesis) two-component regulatory system [BR:ko02022][PATH: eoj02020]
M00475 BarA-UvrY (central carbon metabolism) two-component regulatory system [BR:ko02022][PATH: eoj02020]
M00477 EvgS-EvgA (acid and drug tolerance) two-component regulatory system [BR:ko02022][PATH: eoj02020]
M00486 CitA-CitB (citrate fermentation) two-component regulatory system [BR:ko02022][PATH: eoj02020]
M00488 DcuS-DcuR (aerobic C4-dicarboxylate metabolism) two-component regulatory system [BR:ko02022][PATH: eoj02020]
M00497 GlnL-GlnG (nitrogen regulation) two-component regulatory system [BR:ko02022][PATH: eoj02020]
M00499 HydH-HydG (metal tolerance) two-component regulatory system [BR:ko02022][PATH: eoj02020]
M00502 GlrK-GlrR (amino sugar metabolism) two-component regulatory system [BR:ko02022][PATH: eoj02020]
Signature module
Genotypic signature
Metabolic capacity
Pathogenicity
M00363 EHEC pathogenicity signature, Shiga toxin [PATH: eoj05130]
M00542 EHEC/EPEC pathogenicity signature, T3SS and effectors [PATH: eoj05130]
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