KEGG Modules

Energy metabolism

 Carbon fixation

 Nitrogen metabolism

 Methane metabolism

 Sulfur metabolism
Carbohydrate and lipid metabolism

 Central carbohydrate metabolism
M00307 Pyruvate oxidation, pyruvate => acetyl-CoA [PATH: hpv00010 hpv00020 hpv00620]
M00010 Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH: hpv00020]
M00007 Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH: hpv00030]
M00005 PRPP biosynthesis, ribose 5P => PRPP [PATH: hpv00030 hpv00230]
M00008 Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH: hpv00030]


 Other carbohydrate metabolism

 Fatty acid metabolism
M00083 Fatty acid biosynthesis, elongation [PATH: hpv00061]


 Lipid metabolism
M00093 Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH: hpv00564]


 Lipopolysaccharide metabolism
M00063 CMP-KDO biosynthesis [PATH: hpv00540]
M00064 ADP-L-glycero-D-manno-heptose biosynthesis [PATH: hpv00540]


 Sugar metabolism

 Glycan metabolism

 Glycosaminoglycan metabolism

 Terpenoid backbone biosynthesis

 Sterol biosynthesis

 Other terpenoid biosynthesis
Nucleotide and amino acid metabolism

 Purine metabolism
M00049 Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH: hpv00230]
M00050 Guanine ribonucleotide biosynthesis IMP => GDP,GTP [PATH: hpv00230]


 Pyrimidine metabolism

 Serine and threonine metabolism
M00018 Threonine biosynthesis, apartate => homoserine => threonine [PATH: hpv00260]


 Cysteine and methionine metabolism
M00021 Cysteine biosynthesis, serine => cysteine [PATH: hpv00270]


 Branched-chain amino acid metabolism

 Lysine metabolism

 Arginine and proline metabolism

 Histidine metabolism

 Aromatic amino acid metabolism
M00022 Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH: hpv00400]
M00023 Tryptophan biosynthesis, chorismate => tryptophan [PATH: hpv00400]


 Other amino acid metabolism

 Cofactor and vitamin biosynthesis
M00120 Coenzyme A biosynthesis, pantothenate => CoA [PATH: hpv00770]
M00123 Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH: hpv00780]


 Polyamine biosynthesis

 Phenylpropanoid and flavonoid biosynthesis

 Alkaloid and other secondary metabolite biosynthesis
Secondary metabolism

 Aromatics degradataion

Energy metabolism

 Photosynthesis

 ATP synthesis
M00144 NADH:quinone oxidoreductase, prokaryotes [PATH: hpv00190]
M00151 Cytochrome bc1 complex respiratory unit [PATH: hpv00190]
M00156 Cytochrome c oxidase, cbb3-type [PATH: hpv00190]
M00157 F-type ATPase, bacteria [PATH: hpv00190]

Carbohydrate and lipid metabolism

 Carbohydrate metabolism
M00310 Pyruvate:ferredoxin oxidoreductase [PATH: hpv00620]
M00311 2-oxoglutarate:ferredoxin oxidoreductase [PATH: hpv00020]


 Glycan metabolism
Genetic information processing

 DNA polymerase
M00260 DNA polymerase III complex, bacteria [BR:ko03032 ko03400][PATH: hpv03030 hpv03430 hpv03440]


 Replication system

 Repair system

 RNA polymerase
M00183 RNA polymerase, bacteria [BR:ko03021 ko03400][PATH: hpv03020]


 Spliceosome

 RNA processing

 Ribosome
M00178 Ribosome, bacteria [BR:ko03011][PATH: hpv03010]


 Proteasome

 Ubiquitin system

 Protein processing
Environmental information processing

 Mineral and organic ion transport system
M00189 Molybdate transport system [BR:ko02000][PATH: hpv02010]
M00209 Osmoprotectant transport system [BR:ko02000][PATH: hpv02010]


 Saccharide and polyol transport system
M00210 Putative ABC transport system [BR:ko02000]


 Phosphate and amino acid transport system
M00238 D-Methionine transport system [BR:ko02000][PATH: hpv02010]
M00236 Putative polar amino acid transport system [BR:ko02000]


 Peptide and nickel transport system
M00324 Dipeptide transport system [BR:ko02000][PATH: hpv02010]
M00349 Microcin C transport system [BR:ko02000][PATH: hpv02010]


 Metallic cation, iron-siderophore and vitamin B12 transport system
M00240 Iron complex transport system [BR:ko02000][PATH: hpv02010]


 ABC-2 type and other transport systems
M00320 Lipopolysaccharide export system [BR:ko02000][PATH: hpv02010]
M00256 Cell division transport system [BR:ko02000][PATH: hpv02010]
M00258 Putative ABC transport system [BR:ko02000]


 Phosphotransferase system (PTS)

 Bacterial secretion system
M00335 Sec (secretion) system [BR:ko02044][PATH: hpv03070]
M00336 Twin-arginine translocation (Tat) system [BR:ko02044][PATH: hpv03070]

Metabolism

 Aminoacyl tRNA
M00360 Aminoacyl-tRNA biosynthesis, prokaryotes [PATH: hpv00970]


 Nucleotide sugar
Environmental information processing

 Two-component regulatory system

Genotypic signature

 Pathogenicity