KEGG   Methylobacterium extorquens DM4

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KEGG Modules

Pathway module
    Energy metabolism
       Carbon fixation
       Nitrogen metabolism
        M00531 Assimilatory nitrate reduction, nitrate => ammonia [PATH: mdi00910]
       Methane metabolism
        M00346 Formaldehyde assimilation, serine pathway [PATH: mdi00680]
        M00344 Formaldehyde assimilation, xylulose monophosphate pathway [PATH: mdi00680]
       Sulfur metabolism
    Carbohydrate and lipid metabolism
       Central carbohydrate metabolism
        M00002 Glycolysis, core module involving three-carbon compounds [PATH: mdi00010]
        M00003 Gluconeogenesis, oxaloacetate => fructose-6P [PATH: mdi00010 mdi00020]
        M00307 Pyruvate oxidation, pyruvate => acetyl-CoA [PATH: mdi00010 mdi00020 mdi00620]
        M00009 Citrate cycle (TCA cycle, Krebs cycle) [PATH: mdi00020]
        M00010 Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH: mdi00020]
        M00011 Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH: mdi00020]
        M00006 Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH: mdi00030]
        M00007 Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH: mdi00030]
        M00005 PRPP biosynthesis, ribose 5P => PRPP [PATH: mdi00030 mdi00230]
        M00008 Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH: mdi00030]
       Other carbohydrate metabolism
       Fatty acid metabolism
       Lipid metabolism
        M00091 Phosphatidylcholine (PC) biosynthesis, PE => PC [PATH: mdi00564]
        M00093 Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH: mdi00564]
       Lipopolysaccharide metabolism
       Sugar metabolism
        M00549 Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH: mdi00520]
       Glycan metabolism
       Glycosaminoglycan metabolism
       Terpenoid backbone biosynthesis
       Sterol biosynthesis
       Other terpenoid biosynthesis
    Nucleotide and amino acid metabolism
       Purine metabolism
        M00048 Inosine monophosphate biosynthesis, PRPP + glutamine => IMP [PATH: mdi00230]
        M00049 Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH: mdi00230]
        M00050 Guanine ribonucleotide biosynthesis IMP => GDP,GTP [PATH: mdi00230]
       Pyrimidine metabolism
        M00052 Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH: mdi00240]
       Serine and threonine metabolism
        M00020 Serine biosynthesis, glycerate-3P => serine [PATH: mdi00260]
        M00018 Threonine biosynthesis, apartate => homoserine => threonine [PATH: mdi00260]
       Cysteine and methionine metabolism
        M00021 Cysteine biosynthesis, serine => cysteine [PATH: mdi00270]
        M00017 Methionine biosynthesis, apartate => homoserine => methionine [PATH: mdi00270]
       Branched-chain amino acid metabolism
        M00019 Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH: mdi00290]
        M00570 Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH: mdi00290]
        M00432 Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH: mdi00290]
       Lysine metabolism
        M00016 Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH: mdi00300]
       Arginine and proline metabolism
        M00015 Proline biosynthesis, glutamate => proline [PATH: mdi00330]
        M00028 Ornithine biosynthesis, glutamate => ornithine [PATH: mdi00330]
       Histidine metabolism
       Aromatic amino acid metabolism
        M00022 Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH: mdi00400]
        M00023 Tryptophan biosynthesis, chorismate => tryptophan [PATH: mdi00400]
       Other amino acid metabolism
       Cofactor and vitamin biosynthesis
       Polyamine biosynthesis
        M00134 Polyamine biosynthesis, arginine => ornithine => putrescine [PATH: mdi00330]
       Phenylpropanoid and flavonoid biosynthesis
       Alkaloid and other secondary metabolite biosynthesis
    Secondary metabolism
       Aromatics degradataion
Structural complex
    Energy metabolism Carbohydrate and lipid metabolism
       Carbohydrate metabolism
       Glycan metabolism
    Genetic information processing
       DNA polymerase
       Replication system
       Repair system
       RNA polymerase
        M00183 RNA polymerase, bacteria [BR:ko03021 ko03400][PATH: mdi03020]
       Spliceosome
       RNA processing
       Ribosome
       Proteasome
       Ubiquitin system
       Protein processing
    Environmental information processing
       Mineral and organic ion transport system
       Saccharide and polyol transport system
        M00221 Putative simple sugar transport system [BR:ko02000]
        M00210 Putative ABC transport system [BR:ko02000]
       Phosphate and amino acid transport system
       Peptide and nickel transport system
       Metallic cation, iron-siderophore and vitamin B12 transport system
        M00240 Iron complex transport system [BR:ko02000][PATH: mdi02010]
        M00244 Putative zinc/manganese transport system [BR:ko02000]
       ABC-2 type and other transport systems
       Phosphotransferase system (PTS)
       Bacterial secretion system
Functional set
    Metabolism
       Aminoacyl tRNA
       Nucleotide sugar
    Environmental information processing
       Two-component regulatory system
        M00434 PhoR-PhoB (phosphate starvation response) two-component regulatory system [BR:ko02022][PATH: mdi02020]
        M00445 EnvZ-OmpR (osmotic stress response) two-component regulatory system [BR:ko02022][PATH: mdi02020]
        M00454 KdpD-KdpE (potassium transport) two-component regulatory system [BR:ko02022][PATH: mdi02020]
        M00497 GlnL-GlnG (nitrogen regulation) two-component regulatory system [BR:ko02022][PATH: mdi02020]
        M00498 NtrY-NtrX (nitrogen regulation) two-component regulatory system [BR:ko02022][PATH: mdi02020]
        M00504 DctB-DctD (C4-dicarboxylate transport) two-component regulatory system [BR:ko02022][PATH: mdi02020]
        M00512 CckA-CtrA/CpdR (cell cycle control) two-component regulatory system [BR:ko02022][PATH: mdi02020]
        M00520 ChvG-ChvI (acidity sensing) two-component regulatory system [BR:ko02022][PATH: mdi02020]
        M00523 RegB-RegA (redox response) two-component regulatory system [BR:ko02022][PATH: mdi02020]
        M00524 FixL-FixJ (nitrogen fixation) two-component regulatory system [BR:ko02022][PATH: mdi02020]
Signature module
    Genotypic signature
       Metabolic capacity
       Pathogenicity

KEGG2 PATHWAY BRITE GENES GENOME LIGAND DISEASE DRUG