KEGG Modules

Energy metabolism

 Carbon fixation

 Nitrogen metabolism

 Methane metabolism

 Sulfur metabolism
M00176 Sulfur reduction, sulfate => H2S [PATH: mrs00920]

Carbohydrate and lipid metabolism

 Central carbohydrate metabolism
M00002 Glycolysis, core module involving three-carbon compounds [PATH: mrs00010]
M00307 Pyruvate oxidation, pyruvate => acetyl-CoA [PATH: mrs00010 mrs00020 mrs00620]
M00010 Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH: mrs00020]
M00004 Pentose phosphate pathway (Pentose phosphate cycle) [PATH: mrs00030]
M00006 Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH: mrs00030]
M00007 Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH: mrs00030]
M00005 PRPP biosynthesis, ribose 5P => PRPP [PATH: mrs00030 mrs00230]


 Other carbohydrate metabolism

 Fatty acid metabolism
M00083 Fatty acid biosynthesis, elongation [PATH: mrs00061]
M00086 beta-Oxidation, acyl-CoA synthesis [PATH: mrs00071]


 Lipid metabolism
M00093 Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH: mrs00564]


 Lipopolysaccharide metabolism
M00063 CMP-KDO biosynthesis [PATH: mrs00540]


 Sugar metabolism

 Glycan metabolism

 Glycosaminoglycan metabolism

 Terpenoid backbone biosynthesis
M00364 C10-C20 isoprenoid biosynthesis, bacteria [PATH: mrs00900]


 Sterol biosynthesis

 Other terpenoid biosynthesis
Nucleotide and amino acid metabolism

 Purine metabolism
M00048 Inosine monophosphate biosynthesis, PRPP + glutamine => IMP [PATH: mrs00230]
M00049 Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH: mrs00230]
M00050 Guanine ribonucleotide biosynthesis IMP => GDP,GTP [PATH: mrs00230]


 Pyrimidine metabolism
M00052 Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH: mrs00240]


 Serine and threonine metabolism
M00018 Threonine biosynthesis, apartate => homoserine => threonine [PATH: mrs00260]


 Cysteine and methionine metabolism
M00021 Cysteine biosynthesis, serine => cysteine [PATH: mrs00270]
M00035 Methionine degradation [PATH: mrs00270]


 Branched-chain amino acid metabolism
M00019 Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH: mrs00290]
M00535 Isoleucine biosynthesis, pyruvate => 2-oxobutanoate [PATH: mrs00290]
M00570 Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH: mrs00290]
M00432 Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH: mrs00290]


 Lysine metabolism

 Arginine and proline metabolism
M00015 Proline biosynthesis, glutamate => proline [PATH: mrs00330]


 Histidine metabolism
M00026 Histidine biosynthesis, PRPP => histidine [PATH: mrs00340]
M00045 Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH: mrs00340]


 Aromatic amino acid metabolism
M00023 Tryptophan biosynthesis, chorismate => tryptophan [PATH: mrs00400]


 Other amino acid metabolism

 Cofactor and vitamin biosynthesis
M00115 NAD biosynthesis, aspartate => NAD [PATH: mrs00760]
M00119 Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH: mrs00770]
M00120 Coenzyme A biosynthesis, pantothenate => CoA [PATH: mrs00770]
M00140 C1-unit interconversion, prokaryotes [PATH: mrs00670]


 Polyamine biosynthesis

 Phenylpropanoid and flavonoid biosynthesis

 Alkaloid and other secondary metabolite biosynthesis
Secondary metabolism

 Aromatics degradataion

Energy metabolism

 Photosynthesis

 ATP synthesis
M00155 Cytochrome c oxidase, prokaryotes [PATH: mrs00190]
M00153 Cytochrome d ubiquinol oxidase [PATH: mrs00190]
M00157 F-type ATPase, bacteria [PATH: mrs00190]

Carbohydrate and lipid metabolism

 Carbohydrate metabolism

 Glycan metabolism
Genetic information processing

 DNA polymerase
M00260 DNA polymerase III complex, bacteria [BR:ko03032 ko03400][PATH: mrs03030 mrs03430 mrs03440]


 Replication system

 Repair system

 RNA polymerase

 Spliceosome

 RNA processing

 Ribosome
M00178 Ribosome, bacteria [BR:ko03011][PATH: mrs03010]


 Proteasome

 Ubiquitin system

 Protein processing
Environmental information processing

 Mineral and organic ion transport system

 Saccharide and polyol transport system
M00210 Putative ABC transport system [BR:ko02000]


 Phosphate and amino acid transport system

 Peptide and nickel transport system

 Metallic cation, iron-siderophore and vitamin B12 transport system
M00240 Iron complex transport system [BR:ko02000][PATH: mrs02010]


 ABC-2 type and other transport systems
M00320 Lipopolysaccharide export system [BR:ko02000][PATH: mrs02010]
M00255 Lipoprotein-releasing system [BR:ko02000][PATH: mrs02010]
M00256 Cell division transport system [BR:ko02000][PATH: mrs02010]
M00248 Putative antibiotic transport system [BR:ko02000][PATH: mrs02010]
M00258 Putative ABC transport system [BR:ko02000]
M00254 ABC-2 type transport system [BR:ko02000]


 Phosphotransferase system (PTS)

 Bacterial secretion system
M00335 Sec (secretion) system [BR:ko02044][PATH: mrs03070]
M00336 Twin-arginine translocation (Tat) system [BR:ko02044][PATH: mrs03070]

Metabolism

 Aminoacyl tRNA
M00360 Aminoacyl-tRNA biosynthesis, prokaryotes [PATH: mrs00970]


 Nucleotide sugar
Environmental information processing

 Two-component regulatory system
M00434 PhoR-PhoB (phosphate starvation response) two-component regulatory system [BR:ko02022][PATH: mrs02020]

Genotypic signature

 Metabolic capacity

 Pathogenicity