KEGG Modules

Energy metabolism

 Carbon fixation
M00168 CAM (Crassulacean acid metabolism), dark [PATH: nha00710]
M00169 CAM (Crassulacean acid metabolism), light [PATH: nha00710]


 Nitrogen metabolism

 Methane metabolism

 Sulfur metabolism
M00176 Sulfur reduction, sulfate => H2S [PATH: nha00920]

Carbohydrate and lipid metabolism

 Central carbohydrate metabolism
M00001 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH: nha00010]
M00002 Glycolysis, core module involving three-carbon compounds [PATH: nha00010]
M00003 Gluconeogenesis, oxaloacetate => fructose-6P [PATH: nha00010 nha00020]
M00307 Pyruvate oxidation, pyruvate => acetyl-CoA [PATH: nha00010 nha00020 nha00620]
M00009 Citrate cycle (TCA cycle, Krebs cycle) [PATH: nha00020]
M00010 Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH: nha00020]
M00011 Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH: nha00020]
M00006 Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH: nha00030]
M00007 Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH: nha00030]
M00005 PRPP biosynthesis, ribose 5P => PRPP [PATH: nha00030 nha00230]


 Other carbohydrate metabolism
M00012 Glyoxylate cycle [PATH: nha00630]


 Fatty acid metabolism
M00083 Fatty acid biosynthesis, elongation [PATH: nha00061]
M00086 beta-Oxidation, acyl-CoA synthesis [PATH: nha00071]
M00087 beta-Oxidation [PATH: nha00071]


 Lipid metabolism
M00091 Phosphatidylcholine (PC) biosynthesis, PE => PC [PATH: nha00564]
M00093 Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH: nha00564]


 Lipopolysaccharide metabolism
M00064 ADP-L-glycero-D-manno-heptose biosynthesis [PATH: nha00540]


 Sugar metabolism

 Glycan metabolism

 Glycosaminoglycan metabolism

 Terpenoid backbone biosynthesis

 Sterol biosynthesis

 Other terpenoid biosynthesis
Nucleotide and amino acid metabolism

 Purine metabolism
M00048 Inosine monophosphate biosynthesis, PRPP + glutamine => IMP [PATH: nha00230]
M00049 Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH: nha00230]
M00050 Guanine ribonucleotide biosynthesis IMP => GDP,GTP [PATH: nha00230]


 Pyrimidine metabolism
M00052 Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH: nha00240]


 Serine and threonine metabolism
M00020 Serine biosynthesis, glycerate-3P => serine [PATH: nha00260]
M00018 Threonine biosynthesis, apartate => homoserine => threonine [PATH: nha00260]


 Cysteine and methionine metabolism
M00021 Cysteine biosynthesis, serine => cysteine [PATH: nha00270]


 Branched-chain amino acid metabolism
M00019 Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH: nha00290]
M00570 Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH: nha00290]
M00432 Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH: nha00290]


 Lysine metabolism
M00016 Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine [PATH: nha00300]


 Arginine and proline metabolism
M00015 Proline biosynthesis, glutamate => proline [PATH: nha00330]
M00028 Ornithine biosynthesis, glutamate => ornithine [PATH: nha00330]


 Histidine metabolism

 Aromatic amino acid metabolism
M00022 Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH: nha00400]
M00023 Tryptophan biosynthesis, chorismate => tryptophan [PATH: nha00400]


 Other amino acid metabolism

 Cofactor and vitamin biosynthesis
M00115 NAD biosynthesis, aspartate => NAD [PATH: nha00760]
M00120 Coenzyme A biosynthesis, pantothenate => CoA [PATH: nha00770]
M00123 Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH: nha00780]
M00118 Glutathione biosynthesis, glutamate => glutathione [PATH: nha00480]


 Polyamine biosynthesis
M00134 Polyamine biosynthesis, arginine => ornithine => putrescine [PATH: nha00330]


 Phenylpropanoid and flavonoid biosynthesis

 Alkaloid and other secondary metabolite biosynthesis
Secondary metabolism

 Aromatics degradataion

Energy metabolism

 Photosynthesis

 ATP synthesis
M00144 NADH:quinone oxidoreductase, prokaryotes [PATH: nha00190]
M00149 Succinate dehydrogenase, prokaryotes [PATH: nha00190]
M00151 Cytochrome bc1 complex respiratory unit [PATH: nha00190]
M00155 Cytochrome c oxidase, prokaryotes [PATH: nha00190]
M00153 Cytochrome d ubiquinol oxidase [PATH: nha00190]
M00157 F-type ATPase, bacteria [PATH: nha00190]

Carbohydrate and lipid metabolism

 Carbohydrate metabolism
M00313 indolepyruvate:ferredoxin oxidoreductase


 Glycan metabolism
Genetic information processing

 DNA polymerase
M00260 DNA polymerase III complex, bacteria [BR:ko03032 ko03400][PATH: nha03030 nha03430 nha03440]


 Replication system

 Repair system

 RNA polymerase
M00183 RNA polymerase, bacteria [BR:ko03021 ko03400][PATH: nha03020]


 Spliceosome

 RNA processing

 Ribosome
M00178 Ribosome, bacteria [BR:ko03011][PATH: nha03010]


 Proteasome

 Ubiquitin system

 Protein processing
Environmental information processing

 Mineral and organic ion transport system
M00185 Sulfate transport system [BR:ko02000][PATH: nha02010]
M00189 Molybdate transport system [BR:ko02000][PATH: nha02010]
M00209 Osmoprotectant transport system [BR:ko02000][PATH: nha02010]


 Saccharide and polyol transport system
M00207 Putative multiple sugar transport system [BR:ko02000]


 Phosphate and amino acid transport system
M00222 Phosphate transport system [BR:ko02000][PATH: nha02010]
M00232 General L-amino acid transport system [BR:ko02000][PATH: nha02010]
M00237 Branched-chain amino acid transport system [BR:ko02000][PATH: nha02010]


 Peptide and nickel transport system
M00349 Microcin C transport system [BR:ko02000][PATH: nha02010]


 Metallic cation, iron-siderophore and vitamin B12 transport system
M00240 Iron complex transport system [BR:ko02000][PATH: nha02010]
M00244 Putative zinc/manganese transport system [BR:ko02000]


 ABC-2 type and other transport systems
M00250 Lipopolysaccharide transport system [BR:ko02000][PATH: nha02010]
M00320 Lipopolysaccharide export system [BR:ko02000][PATH: nha02010]
M00255 Lipoprotein-releasing system [BR:ko02000][PATH: nha02010]
M00259 Heme transport system [BR:ko02000][PATH: nha02010]
M00256 Cell division transport system [BR:ko02000][PATH: nha02010]
M00248 Putative antibiotic transport system [BR:ko02000][PATH: nha02010]


 Phosphotransferase system (PTS)

 Bacterial secretion system
M00331 Type II general secretion system [BR:ko02044][PATH: nha03070]
M00333 Type IV secretion system [BR:ko02044][PATH: nha03070]
M00335 Sec (secretion) system [BR:ko02044][PATH: nha03070]
M00336 Twin-arginine translocation (Tat) system [BR:ko02044][PATH: nha03070]

Metabolism

 Aminoacyl tRNA
M00360 Aminoacyl-tRNA biosynthesis, prokaryotes [PATH: nha00970]


 Nucleotide sugar
Environmental information processing

 Two-component regulatory system
M00434 PhoR-PhoB (phosphate starvation response) two-component regulatory system [BR:ko02022][PATH: nha02020]
M00445 EnvZ-OmpR (osmotic stress response) two-component regulatory system [BR:ko02022][PATH: nha02020]
M00454 KdpD-KdpE (potassium transport) two-component regulatory system [BR:ko02022][PATH: nha02020]
M00497 GlnL-GlnG (nitrogen regulation) two-component regulatory system [BR:ko02022][PATH: nha02020]
M00498 NtrY-NtrX (nitrogen regulation) two-component regulatory system [BR:ko02022][PATH: nha02020]
M00512 CckA-CtrA/CpdR (cell cycle control) two-component regulatory system [BR:ko02022][PATH: nha02020]
M00520 ChvG-ChvI (acidity sensing) two-component regulatory system [BR:ko02022][PATH: nha02020]
M00523 RegB-RegA (redox response) two-component regulatory system [BR:ko02022][PATH: nha02020]
M00524 FixL-FixJ (nitrogen fixation) two-component regulatory system [BR:ko02022][PATH: nha02020]

Genotypic signature

 Pathogenicity