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KEGG Modules
Pathway module
Energy metabolism
Carbon fixation
Nitrogen metabolism
M00531 Assimilatory nitrate reduction, nitrate => ammonia [PATH: pde00910]
M00530 Dissimilatory nitrate reduction, nitrate => ammonia [PATH: pde00910]
M00529 Denitrification, nitrate => nitrogen [PATH: pde00910]
Methane metabolism
Sulfur metabolism
Carbohydrate and lipid metabolism
Central carbohydrate metabolism
M00002 Glycolysis, core module involving three-carbon compounds [PATH: pde00010]
M00307 Pyruvate oxidation, pyruvate => acetyl-CoA [PATH: pde00010 pde00020 pde00620]
M00009 Citrate cycle (TCA cycle, Krebs cycle) [PATH: pde00020]
M00010 Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH: pde00020]
M00011 Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH: pde00020]
M00004 Pentose phosphate pathway (Pentose phosphate cycle) [PATH: pde00030]
M00006 Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH: pde00030]
M00007 Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH: pde00030]
M00005 PRPP biosynthesis, ribose 5P => PRPP [PATH: pde00030 pde00230]
M00008 Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH: pde00030]
Other carbohydrate metabolism
Fatty acid metabolism
Lipid metabolism
M00091 Phosphatidylcholine (PC) biosynthesis, PE => PC [PATH: pde00564]
M00093 Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH: pde00564]
Lipopolysaccharide metabolism
Sugar metabolism
M00549 Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH: pde00520]
M00565 Trehalose biosynthesis, D-glucose 1P => trehalose [PATH: pde00500]
Glycan metabolism
Glycosaminoglycan metabolism
Terpenoid backbone biosynthesis
Sterol biosynthesis
Other terpenoid biosynthesis
Nucleotide and amino acid metabolism
Purine metabolism
M00048 Inosine monophosphate biosynthesis, PRPP + glutamine => IMP [PATH: pde00230]
M00049 Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH: pde00230]
M00050 Guanine ribonucleotide biosynthesis IMP => GDP,GTP [PATH: pde00230]
Pyrimidine metabolism
M00052 Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH: pde00240]
Serine and threonine metabolism
Cysteine and methionine metabolism
Branched-chain amino acid metabolism
M00019 Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH: pde00290]
M00570 Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH: pde00290]
M00432 Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH: pde00290]
Lysine metabolism
Arginine and proline metabolism
Histidine metabolism
M00045 Histidine degradation, histidine => N-formiminoglutamate => glutamate [PATH: pde00340]
Aromatic amino acid metabolism
M00022 Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH: pde00400]
M00023 Tryptophan biosynthesis, chorismate => tryptophan [PATH: pde00400]
M00024 Phenylalanine biosynthesis, chorismate => phenylalanine [PATH: pde00400]
M00040 Tyrosine biosynthesis, prephanate => pretyrosine => tyrosine [PATH: pde00400]
Other amino acid metabolism
Cofactor and vitamin biosynthesis
M00115 NAD biosynthesis, aspartate => NAD [PATH: pde00760]
M00120 Coenzyme A biosynthesis, pantothenate => CoA [PATH: pde00770]
M00572 Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP [PATH: pde00780]
M00123 Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH: pde00780]
M00118 Glutathione biosynthesis, glutamate => glutathione [PATH: pde00480]
M00140 C1-unit interconversion, prokaryotes [PATH: pde00670]
Polyamine biosynthesis
M00134 Polyamine biosynthesis, arginine => ornithine => putrescine [PATH: pde00330]
Phenylpropanoid and flavonoid biosynthesis
Alkaloid and other secondary metabolite biosynthesis
Secondary metabolism
Structural complex
Energy metabolism
Photosynthesis
ATP synthesis
Carbohydrate and lipid metabolism
Carbohydrate metabolism
Glycan metabolism
Genetic information processing
DNA polymerase
Replication system
Repair system
RNA polymerase
Spliceosome
RNA processing
Ribosome
Proteasome
Ubiquitin system
Protein processing
Environmental information processing
Mineral and organic ion transport system
M00185 Sulfate transport system [BR:ko02000][PATH: pde02010]
M00189 Molybdate transport system [BR:ko02000][PATH: pde02010]
M00188 NitT/TauT family transport system [BR:ko02000]
M00436 Sulfonate transport system [BR:ko02000][PATH: pde02010]
M00190 Iron(III) transport system [BR:ko02000][PATH: pde02010]
M00299 Spermidine/putrescine transport system [BR:ko02000][PATH: pde02010]
M00193 Putative spermidine/putrescine transport system [BR:ko02000]
M00208 Glycine betaine/proline transport system [BR:ko02000][PATH: pde02010]
M00209 Osmoprotectant transport system [BR:ko02000][PATH: pde02010]
M00442 Putative hydroxymethylpyrimidine transport system [BR:ko02000][PATH: pde02010]
Saccharide and polyol transport system
M00204 Trehalose/maltose transport system [BR:ko02000][PATH: pde02010]
M00215 D-Xylose transport system [BR:ko02000][PATH: pde02010]
M00216 Multiple sugar transport system [BR:ko02000][PATH: pde02010]
M00218 Fructose transport system [BR:ko02000][PATH: pde02010]
M00212 Ribose transport system [BR:ko02000][PATH: pde02010]
M00198 Putative sn-glycerol-phosphate transport system [BR:ko02000][PATH: pde02010]
M00200 Putative sorbitol/mannitol transport system [BR:ko02000][PATH: pde02010]
M00207 Putative multiple sugar transport system [BR:ko02000]
M00221 Putative simple sugar transport system [BR:ko02000]
M00210 Putative ABC transport system [BR:ko02000]
Phosphate and amino acid transport system
M00222 Phosphate transport system [BR:ko02000][PATH: pde02010]
M00223 Phosphonate transport system [BR:ko02000][PATH: pde02010]
M00232 General L-amino acid transport system [BR:ko02000][PATH: pde02010]
M00237 Branched-chain amino acid transport system [BR:ko02000][PATH: pde02010]
M00323 Urea transport system [BR:ko02000][PATH: pde02010]
M00236 Putative polar amino acid transport system [BR:ko02000]
Peptide and nickel transport system
Metallic cation, iron-siderophore and vitamin B12 transport system
M00240 Iron complex transport system [BR:ko02000][PATH: pde02010]
M00242 Zinc transport system [BR:ko02000][PATH: pde02010]
M00317 Manganese/iron transport system [BR:ko02000][PATH: pde02010]
M00581 Biotin transport system [BR:ko02000][PATH: pde02010]
M00244 Putative zinc/manganese transport system [BR:ko02000]
ABC-2 type and other transport systems
M00249 Capsular polysaccharide transport system [BR:ko02000][PATH: pde02010]
M00320 Lipopolysaccharide export system [BR:ko02000][PATH: pde02010]
M00255 Lipoprotein-releasing system [BR:ko02000][PATH: pde02010]
M00259 Heme transport system [BR:ko02000][PATH: pde02010]
M00256 Cell division transport system [BR:ko02000][PATH: pde02010]
M00248 Putative antibiotic transport system [BR:ko02000][PATH: pde02010]
M00258 Putative ABC transport system [BR:ko02000]
M00254 ABC-2 type transport system [BR:ko02000]
Phosphotransferase system (PTS)
Bacterial secretion system
M00330 Adhesin protein transport system [BR:ko02044]
M00333 Type IV secretion system [BR:ko02044][PATH: pde03070]
M00334 Type VI secretion system [BR:ko02044][PATH: pde03070]
M00335 Sec (secretion) system [BR:ko02044][PATH: pde03070]
M00336 Twin-arginine translocation (Tat) system [BR:ko02044][PATH: pde03070]
Functional set
Metabolism
Aminoacyl tRNA
Nucleotide sugar
Environmental information processing
Two-component regulatory system
M00434 PhoR-PhoB (phosphate starvation response) two-component regulatory system [BR:ko02022][PATH: pde02020]
M00445 EnvZ-OmpR (osmotic stress response) two-component regulatory system [BR:ko02022][PATH: pde02020]
M00473 UhpB-UhpA (hexose phosphates uptake) two-component regulatory system [BR:ko02022][PATH: pde02020]
M00497 GlnL-GlnG (nitrogen regulation) two-component regulatory system [BR:ko02022][PATH: pde02020]
M00498 NtrY-NtrX (nitrogen regulation) two-component regulatory system [BR:ko02022][PATH: pde02020]
M00504 DctB-DctD (C4-dicarboxylate transport) two-component regulatory system [BR:ko02022][PATH: pde02020]
M00523 RegB-RegA (redox response) two-component regulatory system [BR:ko02022][PATH: pde02020]
Signature module
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Paracoccus denitrificans