KEGG Modules

Energy metabolism

 Carbon fixation
M00165 Reductive pentose phosphate cycle (Calvin cycle) [PATH: pmb00710]
M00166 Reductive pentose phosphate cycle, RuBP + CO2 => glyceraldehyde-3P [PATH: pmb00710]
M00167 Reductive pentose phosphate cycle, glyceraldehyde-3P => RuBP [PATH: pmb00710]


 Nitrogen metabolism

 Methane metabolism

 Sulfur metabolism
M00176 Sulfur reduction, sulfate => H2S [PATH: pmb00920]

Carbohydrate and lipid metabolism

 Central carbohydrate metabolism
M00002 Glycolysis, core module involving three-carbon compounds [PATH: pmb00010]
M00307 Pyruvate oxidation, pyruvate => acetyl-CoA [PATH: pmb00010 pmb00020 pmb00620]
M00010 Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH: pmb00020]
M00004 Pentose phosphate pathway (Pentose phosphate cycle) [PATH: pmb00030]
M00006 Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH: pmb00030]
M00007 Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH: pmb00030]
M00005 PRPP biosynthesis, ribose 5P => PRPP [PATH: pmb00030 pmb00230]


 Other carbohydrate metabolism

 Fatty acid metabolism
M00083 Fatty acid biosynthesis, elongation [PATH: pmb00061]
M00086 beta-Oxidation, acyl-CoA synthesis [PATH: pmb00071]


 Lipid metabolism

 Lipopolysaccharide metabolism

 Sugar metabolism
M00565 Trehalose biosynthesis, D-glucose 1P => trehalose [PATH: pmb00500]


 Glycan metabolism

 Glycosaminoglycan metabolism

 Terpenoid backbone biosynthesis

 Sterol biosynthesis

 Other terpenoid biosynthesis
Nucleotide and amino acid metabolism

 Purine metabolism
M00048 Inosine monophosphate biosynthesis, PRPP + glutamine => IMP [PATH: pmb00230]
M00049 Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH: pmb00230]
M00050 Guanine ribonucleotide biosynthesis IMP => GDP,GTP [PATH: pmb00230]


 Pyrimidine metabolism
M00052 Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH: pmb00240]


 Serine and threonine metabolism
M00018 Threonine biosynthesis, apartate => homoserine => threonine [PATH: pmb00260]


 Cysteine and methionine metabolism
M00021 Cysteine biosynthesis, serine => cysteine [PATH: pmb00270]


 Branched-chain amino acid metabolism
M00019 Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH: pmb00290]
M00570 Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH: pmb00290]
M00432 Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH: pmb00290]


 Lysine metabolism
M00527 Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine [PATH: pmb00300]


 Arginine and proline metabolism
M00015 Proline biosynthesis, glutamate => proline [PATH: pmb00330]
M00028 Ornithine biosynthesis, glutamate => ornithine [PATH: pmb00330]


 Histidine metabolism

 Aromatic amino acid metabolism
M00022 Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH: pmb00400]


 Other amino acid metabolism

 Cofactor and vitamin biosynthesis
M00115 NAD biosynthesis, aspartate => NAD [PATH: pmb00760]
M00120 Coenzyme A biosynthesis, pantothenate => CoA [PATH: pmb00770]
M00123 Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH: pmb00780]


 Polyamine biosynthesis
M00133 Polyamine biosynthesis, arginine => agmatine => putrescine => spermidine [PATH: pmb00330]


 Phenylpropanoid and flavonoid biosynthesis

 Alkaloid and other secondary metabolite biosynthesis
Secondary metabolism

 Aromatics degradataion

Energy metabolism

 Photosynthesis
M00162 Cytochrome b6f complex [PATH: pmb00195]
M00164 ATP synthase [PATH: pmb00195]


 ATP synthesis
M00145 NAD(P)H:quinone oxidoreductase, chloroplasts and cyanobacteria [PATH: pmb00190]
M00155 Cytochrome c oxidase, prokaryotes [PATH: pmb00190]
M00157 F-type ATPase, bacteria [PATH: pmb00190]

Carbohydrate and lipid metabolism

 Carbohydrate metabolism

 Glycan metabolism
Genetic information processing

 DNA polymerase
M00260 DNA polymerase III complex, bacteria [BR:ko03032 ko03400][PATH: pmb03030 pmb03430 pmb03440]


 Replication system

 Repair system

 RNA polymerase
M00183 RNA polymerase, bacteria [BR:ko03021 ko03400][PATH: pmb03020]


 Spliceosome

 RNA processing

 Ribosome
M00178 Ribosome, bacteria [BR:ko03011][PATH: pmb03010]


 Proteasome

 Ubiquitin system

 Protein processing
Environmental information processing

 Mineral and organic ion transport system
M00190 Iron(III) transport system [BR:ko02000][PATH: pmb02010]


 Saccharide and polyol transport system

 Phosphate and amino acid transport system
M00222 Phosphate transport system [BR:ko02000][PATH: pmb02010]
M00223 Phosphonate transport system [BR:ko02000][PATH: pmb02010]
M00323 Urea transport system [BR:ko02000][PATH: pmb02010]


 Peptide and nickel transport system

 Metallic cation, iron-siderophore and vitamin B12 transport system
M00316 Manganese transport system [BR:ko02000][PATH: pmb02010 pmb02020]
M00582 Energy-coupling factor transport system [BR:ko02000][PATH: pmb02010]
M00244 Putative zinc/manganese transport system [BR:ko02000]


 ABC-2 type and other transport systems
M00248 Putative antibiotic transport system [BR:ko02000][PATH: pmb02010]
M00258 Putative ABC transport system [BR:ko02000]
M00254 ABC-2 type transport system [BR:ko02000]


 Phosphotransferase system (PTS)

 Bacterial secretion system
M00336 Twin-arginine translocation (Tat) system [BR:ko02044][PATH: pmb03070]

Metabolism

 Aminoacyl tRNA
M00360 Aminoacyl-tRNA biosynthesis, prokaryotes [PATH: pmb00970]


 Nucleotide sugar
Environmental information processing

 Two-component regulatory system
M00467 SasA-RpaAB (circadian timing mediating) two-component regulatory system [BR:ko02022][PATH: pmb02020]

Genotypic signature

 Pathogenicity