KEGG Modules
Pathway modules
Carbohydrate metabolism
Central carbohydrate metabolism
M00001 Glycolysis (Embden-Meyerhof pathway), glucose => pyruvate [PATH: ppu00010 ppu01200 ppu01100]
M00002 Glycolysis, core module involving three-carbon compounds [PATH: ppu00010 ppu01200 ppu01230 ppu01100]
M00003 Gluconeogenesis, oxaloacetate => fructose-6P [PATH: ppu00010 ppu00020 ppu01100]
M00307 Pyruvate oxidation, pyruvate => acetyl-CoA [PATH: ppu00010 ppu00020 ppu00620 ppu00785 ppu01200 ppu01210 ppu01100]
M00009 Citrate cycle (TCA cycle, Krebs cycle) [PATH: ppu00020 ppu01200 ppu01100]
M00010 Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH: ppu00020 ppu01200 ppu01210 ppu01230 ppu01100]
M00011 Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH: ppu00020 ppu01200 ppu01210 ppu01100]
M00004 Pentose phosphate pathway (Pentose phosphate cycle) [PATH: ppu00030 ppu01200 ppu01100 ppu01120]
M00006 Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH: ppu00030 ppu01200 ppu01100 ppu01120]
M00007 Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH: ppu00030 ppu01200 ppu01230 ppu01100 ppu01120]
M00005 PRPP biosynthesis, ribose 5P => PRPP [PATH: ppu00030 ppu00230 ppu01200 ppu01230 ppu01100]
M00008 Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate [PATH: ppu00030 ppu01200 ppu01100 ppu01120]
Other carbohydrate metabolism
M00014 Glucuronate pathway (uronate pathway) [PATH: ppu00040 ppu01100]
M00631 D-Galacturonate degradation (bacteria), D-galacturonate => pyruvate + D-glyceraldehyde 3P [PATH: ppu00040 ppu00030 ppu01100]
M00061 D-Glucuronate degradation, D-glucuronate => pyruvate + D-glyceraldehyde 3P [PATH: ppu00040 ppu00030 ppu01100]
M00632 Galactose degradation, Leloir pathway, galactose => alpha-D-glucose-1P [PATH: ppu00052 ppu01100]
M00552 D-galactonate degradation, De Ley-Doudoroff pathway, D-galactonate => glycerate-3P [PATH: ppu00052 ppu01100]
M00854 Glycogen biosynthesis, glucose-1P => glycogen/starch [PATH: ppu00500 ppu01100]
M00855 Glycogen degradation, glycogen => glucose-6P [PATH: ppu00500 ppu01100]
M00549 Nucleotide sugar biosynthesis, glucose => UDP-glucose [PATH: ppu00520 ppu01250 ppu01100]
M00554 Nucleotide sugar biosynthesis, galactose => UDP-galactose [PATH: ppu00520 ppu00052 ppu01250 ppu01100]
M00892 UDP-N-acetyl-D-glucosamine biosynthesis, eukaryotes, glucose => UDP-GlcNAc [PATH: ppu00520 ppu01250 ppu01100]
M00909 UDP-N-acetyl-D-glucosamine biosynthesis, prokaryotes, glucose => UDP-GlcNAc [PATH: ppu00520 ppu01250 ppu01100]
M00761 Undecaprenylphosphate alpha-L-Ara4N biosynthesis, UDP-GlcA => undecaprenyl phosphate alpha-L-Ara4N [PATH: ppu00520 ppu01100]
M00012 Glyoxylate cycle [PATH: ppu00630 ppu01200 ppu01100 ppu01110]
M00741 Propanoyl-CoA metabolism, propanoyl-CoA => succinyl-CoA [PATH: ppu00280 ppu00630 ppu00640 ppu01200 ppu01100]
M00130 Inositol phosphate metabolism, PI=> PIP2 => Ins(1,4,5)P3 => Ins(1,3,4,5)P4 [PATH: ppu00562 ppu01100]
M00131 Inositol phosphate metabolism, Ins(1,3,4,5)P4 => Ins(1,3,4)P3 => myo-inositol [PATH: ppu00562 ppu01100]
M00132 Inositol phosphate metabolism, Ins(1,3,4)P3 => phytate [PATH: ppu00562 ppu01100]
Energy metabolism
Carbon fixation
Methane metabolism
Nitrogen metabolism
Sulfur metabolism
Photosynthesis
ATP synthesis
M00144 NADH:quinone oxidoreductase, prokaryotes [PATH: ppu00190 ppu01100]
M00142 NADH:ubiquinone oxidoreductase, mitochondria [PATH: ppu00190 ppu01100]
M00143 NADH dehydrogenase (ubiquinone) Fe-S protein/flavoprotein complex, mitochondria [PATH: ppu00190 ppu01100]
M00146 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex [PATH: ppu00190 ppu01100]
M00149 Succinate dehydrogenase, prokaryotes [PATH: ppu00190 ppu01100]
M00150 Fumarate reductase, prokaryotes [PATH: ppu00190 ppu01100]
M00148 Succinate dehydrogenase (ubiquinone) [PATH: ppu00190 ppu01100]
M00151 Cytochrome bc1 complex respiratory unit [PATH: ppu00190 ppu01100]
M00152 Cytochrome bc1 complex [PATH: ppu00190 ppu01100]
M00154 Cytochrome c oxidase [PATH: ppu00190 ppu01100]
M00155 Cytochrome c oxidase, prokaryotes [PATH: ppu00190 ppu01100]
M00153 Cytochrome bd ubiquinol oxidase [PATH: ppu00190]
M00417 Cytochrome o ubiquinol oxidase [PATH: ppu00190 ppu01100]
M00156 Cytochrome c oxidase, cbb3-type [PATH: ppu00190 ppu01100]
M00157 F-type ATPase, prokaryotes and chloroplasts [PATH: ppu00190 ppu01100]
M00158 F-type ATPase, eukaryotes [PATH: ppu00190 ppu01100]
M00160 V-type ATPase, eukaryotes [PATH: ppu00190 ppu01100]
Lipid metabolism
Fatty acid metabolism
Sterol biosynthesis
M00101 Cholesterol biosynthesis, FPP => cholesterol [PATH: ppu01100]
M00103 Cholecalciferol biosynthesis [PATH: ppu01100]
M00107 Steroid hormone biosynthesis, cholesterol => pregnenolone => progesterone [PATH: ppu01100]
M00109 C21-Steroid hormone biosynthesis, progesterone => cortisol/cortisone [PATH: ppu01100]
M00110 C19/C18-Steroid hormone biosynthesis, pregnenolone => androstenedione => estrone [PATH: ppu01100]
M00976 C19-Steroid hormone biosynthesis, pregnenolone => testosterone => dihydrotestosterone [PATH: ppu01100]
Lipid metabolism
Nucleotide metabolism
Purine metabolism
Pyrimidine metabolism
Amino acid metabolism
Serine and threonine metabolism
Cysteine and methionine metabolism
Branched-chain amino acid metabolism
Lysine metabolism
Arginine and proline metabolism
Polyamine biosynthesis
Histidine metabolism
Aromatic amino acid metabolism
M00022 Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH: ppu00400 ppu01230 ppu01100 ppu01110]
M00023 Tryptophan biosynthesis, chorismate => tryptophan [PATH: ppu00400 ppu01230 ppu01100 ppu01110]
M00024 Phenylalanine biosynthesis, chorismate => phenylpyruvate => phenylalanine [PATH: ppu00400 ppu01230 ppu01100 ppu01110]
M00025 Tyrosine biosynthesis, chorismate => HPP => tyrosine [PATH: ppu00400 ppu01230 ppu01100]
M00040 Tyrosine biosynthesis, chorismate => arogenate => tyrosine [PATH: ppu00400 ppu01230 ppu01100 ppu01110]
M00042 Catecholamine biosynthesis, tyrosine => dopamine => noradrenaline => adrenaline [PATH: ppu00350 ppu01100]
M00043 Thyroid hormone biosynthesis, tyrosine => triiodothyronine/thyroxine [PATH: ppu00350 ppu01100]
M00044 Tyrosine degradation, tyrosine => homogentisate [PATH: ppu00350 ppu01100]
M00533 Homoprotocatechuate degradation, homoprotocatechuate => 2-oxohept-3-enedioate [PATH: ppu00350 ppu01220 ppu01100 ppu01120]
M00037 Melatonin biosynthesis, animals, tryptophan => serotonin => melatonin [PATH: ppu00380 ppu01100]
M00038 Tryptophan metabolism, tryptophan => kynurenine => 2-aminomuconate [PATH: ppu00380 ppu01100]
Other amino acid metabolism
Glycan metabolism
Glycan biosynthesis
M00055 N-glycan precursor biosynthesis [PATH: ppu01100]
M00073 N-glycan precursor trimming [PATH: ppu01100]
M00075 N-glycan biosynthesis, complex type [PATH: ppu01100]
M00872 O-glycan biosynthesis, mannose type (core M3) [PATH: ppu01100]
M00065 GPI-anchor biosynthesis, core oligosaccharide [PATH: ppu01100]
M00070 Glycosphingolipid biosynthesis, lacto-series, LacCer => Lc4Cer [PATH: ppu01100]
M00071 Glycosphingolipid biosynthesis, neolacto-series, LacCer => nLc4Cer [PATH: ppu01100]
M00069 Glycosphingolipid biosynthesis, ganglio series, LacCer => GT3 [PATH: ppu01100]
Glycosaminoglycan metabolism
Lipopolysaccharide metabolism
Metabolism of cofactors and vitamins
Cofactor and vitamin metabolism
M00127 Thiamine biosynthesis, prokaryotes, AIR (+ DXP/tyrosine) => TMP/TPP [PATH: ppu00730 ppu01240 ppu01100]
M00899 Thiamine salvage pathway, HMP/HET => TMP [PATH: ppu00730 ppu01100]
M00125 Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD [PATH: ppu00740 ppu01240 ppu01100 ppu01110]
M00124 Pyridoxal-P biosynthesis, erythrose-4P => pyridoxal-P [PATH: ppu00750 ppu01240 ppu01100]
M00115 NAD biosynthesis, aspartate => quinolinate => NAD [PATH: ppu00760 ppu01240 ppu01100]
M00912 NAD biosynthesis, tryptophan => quinolinate => NAD [PATH: ppu00380 ppu00760 ppu01240 ppu01100]
M00622 Nicotinate degradation, nicotinate => fumarate [PATH: ppu00760 ppu01100 ppu01120]
M00119 Pantothenate biosynthesis, valine/L-aspartate => pantothenate [PATH: ppu00770 ppu01240 ppu01100 ppu01110]
M00120 Coenzyme A biosynthesis, pantothenate => CoA [PATH: ppu00770 ppu01240 ppu01100]
M00572 Pimeloyl-ACP biosynthesis, BioC-BioH pathway, malonyl-ACP => pimeloyl-ACP [PATH: ppu00780 ppu01240 ppu01100]
M00123 Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH: ppu00780 ppu01240 ppu01100]
M00881 Lipoic acid biosynthesis, plants and bacteria, octanoyl-ACP => dihydrolipoyl-E2/H [PATH: ppu00785 ppu01240 ppu01100]
M00882 Lipoic acid biosynthesis, eukaryotes, octanoyl-ACP => dihydrolipoyl-H [PATH: ppu00785 ppu01240 ppu01100]
M00883 Lipoic acid biosynthesis, animals and bacteria, octanoyl-ACP => dihydrolipoyl-H => dihydrolipoyl-E2 [PATH: ppu00785 ppu01240 ppu01100]
M00126 Tetrahydrofolate biosynthesis, GTP => THF [PATH: ppu00790 ppu00670 ppu01240 ppu01100]
M00842 Tetrahydrobiopterin biosynthesis, GTP => BH4 [PATH: ppu00790 ppu01240 ppu01100]
M00880 Molybdenum cofactor biosynthesis, GTP => molybdenum cofactor [PATH: ppu00790 ppu01240 ppu01100]
M00141 C1-unit interconversion, eukaryotes [PATH: ppu00670 ppu01240 ppu01100]
M00846 Siroheme biosynthesis, glutamyl-tRNA => siroheme [PATH: ppu00860 ppu01240 ppu01100 ppu01110]
M00868 Heme biosynthesis, animals and fungi, glycine => heme [PATH: ppu00860 ppu01240 ppu01100 ppu01110]
M00121 Heme biosynthesis, plants and bacteria, glutamate => heme [PATH: ppu00860 ppu01240 ppu01100 ppu01110]
M00122 Cobalamin biosynthesis, cobyrinate a,c-diamide => cobalamin [PATH: ppu00860 ppu01240 ppu01100]
M00117 Ubiquinone biosynthesis, prokaryotes, chorismate (+ polyprenyl-PP) => ubiquinol [PATH: ppu00130 ppu01240 ppu01100 ppu01110]
M00128 Ubiquinone biosynthesis, eukaryotes, 4-hydroxybenzoate + polyprenyl-PP => ubiquinol [PATH: ppu00130 ppu01240 ppu01100]
M00116 Menaquinone biosynthesis, chorismate (+ polyprenyl-PP) => menaquinol [PATH: ppu00130 ppu01240 ppu01100 ppu01110]
Biosynthesis of terpenoids and polyketides
Terpenoid backbone biosynthesis
Plant terpenoid biosynthesis
Macrolide biosynthesis
Enediyne biosynthesis
Type II polyketide biosynthesis
Polyketide sugar unit biosynthesis
Biosynthesis of other secondary metabolites
Biosynthesis of phytochemical compounds
Biosynthesis of beta-lactams
Biosynthesis of other antibiotics
Biosynthesis of other fungal compounds
Biosynthesis of other bacterial compounds
Xenobiotics biodegradation
Signature modules
Gene set
Pathogenicity
Drug resistance
M00851 Carbapenem resistance [PATH: ppu01501]
M00745 Imipenem resistance, repression of porin OprD
M00639 Multidrug resistance, efflux pump MexCD-OprJ
M00641 Multidrug resistance, efflux pump MexEF-OprN
M00642 Multidrug resistance, efflux pump MexJK-OprM
M00649 Multidrug resistance, efflux pump AdeABC [PATH: ppu01501]
Plant pathogenicity
Symbiosis
Module set
Metabolic capacity
M00615 Nitrate assimilation
M00616 Sulfate-sulfur assimilation
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