KEGG Modules

Energy metabolism

 Carbon fixation

 Nitrogen metabolism

 Methane metabolism

 Sulfur metabolism
Carbohydrate and lipid metabolism

 Central carbohydrate metabolism
M00307 Pyruvate oxidation, pyruvate => acetyl-CoA [PATH: rhe00010 rhe00020 rhe00620]
M00009 Citrate cycle (TCA cycle, Krebs cycle) [PATH: rhe00020]
M00010 Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH: rhe00020]
M00011 Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate [PATH: rhe00020]


 Other carbohydrate metabolism

 Fatty acid metabolism
M00083 Fatty acid biosynthesis, elongation [PATH: rhe00061]


 Lipid metabolism
M00093 Phosphatidylethanolamine (PE) biosynthesis, PA => PS => PE [PATH: rhe00564]


 Lipopolysaccharide metabolism

 Sugar metabolism

 Glycan metabolism

 Glycosaminoglycan metabolism

 Terpenoid backbone biosynthesis

 Sterol biosynthesis

 Other terpenoid biosynthesis
Nucleotide and amino acid metabolism

 Purine metabolism

 Pyrimidine metabolism
M00052 Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH: rhe00240]


 Serine and threonine metabolism

 Cysteine and methionine metabolism

 Branched-chain amino acid metabolism

 Lysine metabolism

 Arginine and proline metabolism

 Histidine metabolism

 Aromatic amino acid metabolism

 Other amino acid metabolism

 Cofactor and vitamin biosynthesis

 Polyamine biosynthesis

 Phenylpropanoid and flavonoid biosynthesis

 Alkaloid and other secondary metabolite biosynthesis
Secondary metabolism

 Aromatics degradataion

Energy metabolism

 Photosynthesis

 ATP synthesis
M00144 NADH:quinone oxidoreductase, prokaryotes [PATH: rhe00190]
M00149 Succinate dehydrogenase, prokaryotes [PATH: rhe00190]
M00151 Cytochrome bc1 complex respiratory unit [PATH: rhe00190]
M00155 Cytochrome c oxidase, prokaryotes [PATH: rhe00190]
M00153 Cytochrome d ubiquinol oxidase [PATH: rhe00190]
M00157 F-type ATPase, bacteria [PATH: rhe00190]

Carbohydrate and lipid metabolism

 Carbohydrate metabolism

 Glycan metabolism
Genetic information processing

 DNA polymerase
M00260 DNA polymerase III complex, bacteria [BR:ko03032 ko03400][PATH: rhe03030 rhe03430 rhe03440]


 Replication system

 Repair system

 RNA polymerase
M00183 RNA polymerase, bacteria [BR:ko03021 ko03400][PATH: rhe03020]


 Spliceosome

 RNA processing

 Ribosome
M00178 Ribosome, bacteria [BR:ko03011][PATH: rhe03010]


 Proteasome

 Ubiquitin system

 Protein processing
Environmental information processing

 Mineral and organic ion transport system

 Saccharide and polyol transport system
M00210 Putative ABC transport system [BR:ko02000]


 Phosphate and amino acid transport system
M00236 Putative polar amino acid transport system [BR:ko02000]


 Peptide and nickel transport system

 Metallic cation, iron-siderophore and vitamin B12 transport system
M00242 Zinc transport system [BR:ko02000][PATH: rhe02010]
M00247 Putative ABC transport system [BR:ko02000]


 ABC-2 type and other transport systems
M00250 Lipopolysaccharide transport system [BR:ko02000][PATH: rhe02010]
M00320 Lipopolysaccharide export system [BR:ko02000][PATH: rhe02010]
M00255 Lipoprotein-releasing system [BR:ko02000][PATH: rhe02010]
M00259 Heme transport system [BR:ko02000][PATH: rhe02010]


 Phosphotransferase system (PTS)

 Bacterial secretion system
M00333 Type IV secretion system [BR:ko02044][PATH: rhe03070]
M00335 Sec (secretion) system [BR:ko02044][PATH: rhe03070]
M00336 Twin-arginine translocation (Tat) system [BR:ko02044][PATH: rhe03070]

Metabolism

 Aminoacyl tRNA
M00360 Aminoacyl-tRNA biosynthesis, prokaryotes [PATH: rhe00970]


 Nucleotide sugar
Environmental information processing

 Two-component regulatory system
M00445 EnvZ-OmpR (osmotic stress response) two-component regulatory system [BR:ko02022][PATH: rhe02020]
M00498 NtrY-NtrX (nitrogen regulation) two-component regulatory system [BR:ko02022][PATH: rhe02020]

Genotypic signature

 Metabolic capacity

 Pathogenicity