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KEGG Modules
Pathway module
Energy metabolism
Carbon fixation
Nitrogen metabolism
Methane metabolism
Sulfur metabolism
Carbohydrate and lipid metabolism
Central carbohydrate metabolism
Other carbohydrate metabolism
Fatty acid metabolism
Lipid metabolism
Lipopolysaccharide metabolism
Sugar metabolism
Glycan metabolism
Glycosaminoglycan metabolism
Terpenoid backbone biosynthesis
Sterol biosynthesis
Other terpenoid biosynthesis
Nucleotide and amino acid metabolism
Purine metabolism
M00048 Inosine monophosphate biosynthesis, PRPP + glutamine => IMP [PATH: sst00230]
M00049 Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH: sst00230]
M00050 Guanine ribonucleotide biosynthesis IMP => GDP,GTP [PATH: sst00230]
Pyrimidine metabolism
M00052 Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH: sst00240]
Serine and threonine metabolism
M00020 Serine biosynthesis, glycerate-3P => serine [PATH: sst00260]
M00018 Threonine biosynthesis, apartate => homoserine => threonine [PATH: sst00260]
Cysteine and methionine metabolism
Branched-chain amino acid metabolism
M00019 Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH: sst00290]
M00570 Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH: sst00290]
M00432 Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH: sst00290]
Lysine metabolism
Arginine and proline metabolism
Histidine metabolism
Aromatic amino acid metabolism
Other amino acid metabolism
Cofactor and vitamin biosynthesis
Polyamine biosynthesis
Phenylpropanoid and flavonoid biosynthesis
Alkaloid and other secondary metabolite biosynthesis
Secondary metabolism
Structural complex
Energy metabolism
Photosynthesis
ATP synthesis
Carbohydrate and lipid metabolism
Carbohydrate metabolism
Glycan metabolism
Genetic information processing
DNA polymerase
Replication system
Repair system
RNA polymerase
Spliceosome
RNA processing
Ribosome
Proteasome
Ubiquitin system
Protein processing
Environmental information processing
Mineral and organic ion transport system
M00299 Spermidine/putrescine transport system [BR:ko02000][PATH: sst02010]
M00209 Osmoprotectant transport system [BR:ko02000][PATH: sst02010]
Saccharide and polyol transport system
M00196 Multiple sugar transport system [BR:ko02000][PATH: sst02010]
M00197 Putative fructooligosaccharide transport system [BR:ko02000]
M00491 Putative arabinogalactan oligomer transport system [BR:ko02000][PATH: sst02010]
Phosphate and amino acid transport system
M00222 Phosphate transport system [BR:ko02000][PATH: sst02010]
M00234 Cystine transport system [BR:ko02000][PATH: sst02010]
M00237 Branched-chain amino acid transport system [BR:ko02000][PATH: sst02010]
M00238 D-Methionine transport system [BR:ko02000][PATH: sst02010]
M00228 Putative glutamine transport system [BR:ko02000][PATH: sst02010]
M00236 Putative polar amino acid transport system [BR:ko02000]
Peptide and nickel transport system
Metallic cation, iron-siderophore and vitamin B12 transport system
M00240 Iron complex transport system [BR:ko02000][PATH: sst02010]
M00242 Zinc transport system [BR:ko02000][PATH: sst02010]
M00319 Manganese/zinc/iron transport system [BR:ko02000][PATH: sst02010]
M00582 Energy-coupling factor transport system [BR:ko02000][PATH: sst02010]
M00247 Putative ABC transport system [BR:ko02000]
ABC-2 type and other transport systems
M00256 Cell division transport system [BR:ko02000][PATH: sst02010]
M00248 Putative antibiotic transport system [BR:ko02000][PATH: sst02010]
M00258 Putative ABC transport system [BR:ko02000]
Phosphotransferase system (PTS)
M00265 PTS system, glucose-specific II component [BR:ko02000][PATH: sst00010 sst02060]
M00269 PTS system, sucrose-specific II component [BR:ko02000][PATH: sst00500 sst02060]
M00271 PTS system, beta-glucosides-specific II component [BR:ko02000][PATH: sst02060]
M00270 PTS system, trehalose-specific II component [BR:ko02000][PATH: sst00500 sst02060]
M00273 PTS system, fructose-specific II component [BR:ko02000][PATH: sst00051 sst02060]
M00281 PTS system, lactose-specific II component [BR:ko02000][PATH: sst00052 sst02060]
M00275 PTS system, cellobiose-specific II component [BR:ko02000][PATH: sst02060]
M00276 PTS system, mannose-specific II component [BR:ko02000][PATH: sst00051 sst02060]
M00277 PTS system, N-acetylgalactosamine-specific II component [BR:ko02000][PATH: sst00052 sst02060]
M00283 PTS system, ascorbate-specific II component [BR:ko02000][PATH: sst00053 sst02060]
Bacterial secretion system
M00429 Competence-related DNA transformation transporter [BR:ko02044]
Functional set
Metabolism
Aminoacyl tRNA
Nucleotide sugar
Environmental information processing
Two-component regulatory system
M00459 VicK-VicR (cell wall metabolism) two-component regulatory system [BR:ko02022][PATH: sst02020]
M00481 LiaS-LiaR (cell wall stress response) two-component regulatory system [BR:ko02022][PATH: sst02020]
M00521 CiaH-CiaR (stress resistance and pathogenesis) two-component regulatory system [BR:ko02022][PATH: sst02020]
Signature module
Genotypic signature
Metabolic capacity
Pathogenicity
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