KEGG Modules

Energy metabolism

 Carbon fixation
M00165 Reductive pentose phosphate cycle (Calvin cycle) [PATH: syn00710]
M00166 Reductive pentose phosphate cycle, RuBP + CO2 => glyceraldehyde-3P [PATH: syn00710]
M00167 Reductive pentose phosphate cycle, glyceraldehyde-3P => RuBP [PATH: syn00710]
M00168 CAM (Crassulacean acid metabolism), dark [PATH: syn00710]


 Nitrogen metabolism
M00531 Assimilatory nitrate reduction, nitrate => ammonia [PATH: syn00910]


 Methane metabolism

 Sulfur metabolism
M00176 Sulfur reduction, sulfate => H2S [PATH: syn00920]

Carbohydrate and lipid metabolism

 Central carbohydrate metabolism
M00002 Glycolysis, core module involving three-carbon compounds [PATH: syn00010]
M00307 Pyruvate oxidation, pyruvate => acetyl-CoA [PATH: syn00010 syn00020 syn00620]
M00010 Citrate cycle, first carbon oxidation, oxaloacetate => 2-oxoglutarate [PATH: syn00020]
M00004 Pentose phosphate pathway (Pentose phosphate cycle) [PATH: syn00030]
M00006 Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P [PATH: syn00030]
M00007 Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P [PATH: syn00030]
M00005 PRPP biosynthesis, ribose 5P => PRPP [PATH: syn00030 syn00230]


 Other carbohydrate metabolism

 Fatty acid metabolism
M00083 Fatty acid biosynthesis, elongation [PATH: syn00061]
M00086 beta-Oxidation, acyl-CoA synthesis [PATH: syn00071]


 Lipid metabolism

 Lipopolysaccharide metabolism

 Sugar metabolism
M00565 Trehalose biosynthesis, D-glucose 1P => trehalose [PATH: syn00500]


 Glycan metabolism

 Glycosaminoglycan metabolism

 Terpenoid backbone biosynthesis
M00096 C5 isoprenoid biosynthesis, non-mevalonate pathway [PATH: syn00900]
M00364 C10-C20 isoprenoid biosynthesis, bacteria [PATH: syn00900]


 Sterol biosynthesis

 Other terpenoid biosynthesis
Nucleotide and amino acid metabolism

 Purine metabolism
M00048 Inosine monophosphate biosynthesis, PRPP + glutamine => IMP [PATH: syn00230]
M00049 Adenine ribonucleotide biosynthesis, IMP => ADP,ATP [PATH: syn00230]
M00050 Guanine ribonucleotide biosynthesis IMP => GDP,GTP [PATH: syn00230]


 Pyrimidine metabolism
M00052 Pyrimidine ribonucleotide biosynthesis, UMP => UDP/UTP,CDP/CTP [PATH: syn00240]


 Serine and threonine metabolism
M00018 Threonine biosynthesis, apartate => homoserine => threonine [PATH: syn00260]


 Cysteine and methionine metabolism
M00021 Cysteine biosynthesis, serine => cysteine [PATH: syn00270]


 Branched-chain amino acid metabolism
M00019 Valine/isoleucine biosynthesis, pyruvate => valine / 2-oxobutanoate => isoleucine [PATH: syn00290]
M00570 Isoleucine biosynthesis, threonine => 2-oxobutanoate => isoleucine [PATH: syn00290]
M00432 Leucine biosynthesis, 2-oxoisovalerate => 2-oxoisocaproate [PATH: syn00290]


 Lysine metabolism
M00527 Lysine biosynthesis, DAP aminotransferase pathway, aspartate => lysine [PATH: syn00300]


 Arginine and proline metabolism
M00015 Proline biosynthesis, glutamate => proline [PATH: syn00330]
M00028 Ornithine biosynthesis, glutamate => ornithine [PATH: syn00330]


 Histidine metabolism

 Aromatic amino acid metabolism
M00022 Shikimate pathway, phosphoenolpyruvate + erythrose-4P => chorismate [PATH: syn00400]
M00023 Tryptophan biosynthesis, chorismate => tryptophan [PATH: syn00400]


 Other amino acid metabolism

 Cofactor and vitamin biosynthesis
M00115 NAD biosynthesis, aspartate => NAD [PATH: syn00760]
M00120 Coenzyme A biosynthesis, pantothenate => CoA [PATH: syn00770]
M00123 Biotin biosynthesis, pimeloyl-ACP/CoA => biotin [PATH: syn00780]
M00116 Menaquinone biosynthesis, chorismate => menaquinone [PATH: syn00130]


 Polyamine biosynthesis

 Phenylpropanoid and flavonoid biosynthesis

 Alkaloid and other secondary metabolite biosynthesis
Secondary metabolism

 Aromatics degradataion

Energy metabolism

 Photosynthesis
M00161 Photosystem II [PATH: syn00195]
M00162 Cytochrome b6f complex [PATH: syn00195]
M00164 ATP synthase [PATH: syn00195]


 ATP synthesis
M00145 NAD(P)H:quinone oxidoreductase, chloroplasts and cyanobacteria [PATH: syn00190]
M00155 Cytochrome c oxidase, prokaryotes [PATH: syn00190]
M00153 Cytochrome d ubiquinol oxidase [PATH: syn00190]
M00157 F-type ATPase, bacteria [PATH: syn00190]

Carbohydrate and lipid metabolism

 Carbohydrate metabolism

 Glycan metabolism
Genetic information processing

 DNA polymerase
M00260 DNA polymerase III complex, bacteria [BR:ko03032 ko03400][PATH: syn03030 syn03430 syn03440]


 Replication system

 Repair system

 RNA polymerase
M00183 RNA polymerase, bacteria [BR:ko03021 ko03400][PATH: syn03020]


 Spliceosome

 RNA processing

 Ribosome
M00178 Ribosome, bacteria [BR:ko03011][PATH: syn03010]


 Proteasome

 Ubiquitin system

 Protein processing
Environmental information processing

 Mineral and organic ion transport system
M00185 Sulfate transport system [BR:ko02000][PATH: syn02010]
M00189 Molybdate transport system [BR:ko02000][PATH: syn02010]
M00438 Nitrate/nitrite transport system [BR:ko02000][PATH: syn02010]
M00321 Bicarbonate transport system [BR:ko02000][PATH: syn02010]
M00188 NitT/TauT family transport system [BR:ko02000]
M00190 Iron(III) transport system [BR:ko02000][PATH: syn02010]


 Saccharide and polyol transport system
M00207 Putative multiple sugar transport system [BR:ko02000]
M00210 Putative ABC transport system [BR:ko02000]


 Phosphate and amino acid transport system
M00222 Phosphate transport system [BR:ko02000][PATH: syn02010]
M00232 General L-amino acid transport system [BR:ko02000][PATH: syn02010]
M00237 Branched-chain amino acid transport system [BR:ko02000][PATH: syn02010]
M00322 Neutral amino acid transport system [BR:ko02000][PATH: syn02010]
M00323 Urea transport system [BR:ko02000][PATH: syn02010]


 Peptide and nickel transport system
M00239 Peptides/nickel transport system [BR:ko02000][PATH: syn02010]


 Metallic cation, iron-siderophore and vitamin B12 transport system
M00240 Iron complex transport system [BR:ko02000][PATH: syn02010]
M00316 Manganese transport system [BR:ko02000][PATH: syn02010 syn02020]
M00242 Zinc transport system [BR:ko02000][PATH: syn02010]
M00245 Cobalt transport system [BR:ko02000][PATH: syn02010]
M00582 Energy-coupling factor transport system [BR:ko02000][PATH: syn02010]
M00244 Putative zinc/manganese transport system [BR:ko02000]


 ABC-2 type and other transport systems
M00250 Lipopolysaccharide transport system [BR:ko02000][PATH: syn02010]
M00256 Cell division transport system [BR:ko02000][PATH: syn02010]
M00248 Putative antibiotic transport system [BR:ko02000][PATH: syn02010]
M00258 Putative ABC transport system [BR:ko02000]
M00254 ABC-2 type transport system [BR:ko02000]


 Phosphotransferase system (PTS)

 Bacterial secretion system
M00336 Twin-arginine translocation (Tat) system [BR:ko02044][PATH: syn03070]

Metabolism

 Aminoacyl tRNA
M00360 Aminoacyl-tRNA biosynthesis, prokaryotes [PATH: syn00970]


 Nucleotide sugar
Environmental information processing

 Two-component regulatory system
M00434 PhoR-PhoB (phosphate starvation response) two-component regulatory system [BR:ko02022][PATH: syn02020]
M00464 NrsS-NrsR (nickel tolerance) two-component regulatory system [BR:ko02022][PATH: syn02020]
M00465 ManS-ManR (manganese homeostasis) two-component regulatory system [BR:ko02022][PATH: syn02020]
M00467 SasA-RpaAB (circadian timing mediating) two-component regulatory system [BR:ko02022][PATH: syn02020]
M00508 PixL-PixGH (positive phototaxis) two-component regulatory system [BR:ko02022 ko02035][PATH: syn02020]
M00510 Cph1-Rcp1 (light response) two-component regulatory system [BR:ko02022][PATH: syn02020]

Genotypic signature

 Pathogenicity