Metabolic pathways - Acidimicrobium ferrooxidans DSM 10331

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Reference pathway Reference pathway (KO) Reference pathway (EC) Reference pathway (Reaction) -----< Set personalized menu >----- -----< Sort below by alphabet >----- Homo sapiens (human) Homo sapiens (human) + Disease/drug Pan troglodytes (chimpanzee) Pan paniscus (bonobo) Gorilla gorilla gorilla (western lowland gorilla) Pongo abelii (Sumatran orangutan) Macaca mulatta (rhesus monkey) Mus musculus (mouse) Rattus norvegicus (rat) Canis familiaris (dog) Ailuropoda melanoleuca (giant panda) Felis catus (domestic cat) Bos taurus (cow) Sus scrofa (pig) Equus caballus (horse) Monodelphis domestica (opossum) Sarcophilus harrisii (Tasmanian devil) Ornithorhynchus anatinus (platypus) Gallus gallus (chicken) Meleagris gallopavo (turkey) Taeniopygia guttata (zebra finch) Anolis carolinensis (green anole) Xenopus laevis (African clawed frog) Xenopus tropicalis (western clawed frog) Danio rerio (zebrafish) Takifugu rubripes (torafugu) Oryzias latipes (Japanese medaka) Branchiostoma floridae (Florida lancelet) Ciona intestinalis (sea squirt) Strongylocentrotus purpuratus (purple sea urchin) Drosophila melanogaster (fruit fly) Drosophila pseudoobscura pseudoobscura Drosophila ananassae Drosophila erecta Drosophila persimilis Drosophila sechellia Drosophila simulans Drosophila willistoni Drosophila yakuba Drosophila grimshawi Drosophila mojavensis Drosophila virilis Anopheles gambiae (mosquito) Aedes aegypti (yellow fever mosquito) Culex quinquefasciatus (southern house mosquito) Apis mellifera (honey bee) Nasonia vitripennis (jewel wasp) Tribolium castaneum (red flour beetle) Acyrthosiphon pisum (pea aphid) Pediculus humanus corporis (human body louse) Ixodes scapularis (black-legged tick) Caenorhabditis elegans (nematode) Caenorhabditis briggsae Brugia malayi (filaria) Trichinella spiralis Schistosoma mansoni Nematostella vectensis (sea anemone) Hydra magnipapillata Trichoplax adhaerens Amphimedon queenslandica (sponge) Arabidopsis thaliana (thale cress) Arabidopsis lyrata (lyrate rockcress) Glycine max (soybean) Medicago truncatula (barrel medic) Cucumis sativus (cucumber) Ricinus communis (castor bean) Populus trichocarpa (black cottonwood) Vitis vinifera (wine grape) Oryza sativa japonica (Japanese rice) (RefSeq) Oryza sativa japonica (Japanese rice) (RAPDB) Brachypodium distachyon Sorghum bicolor (sorghum) Zea mays (maize) Selaginella moellendorffii Physcomitrella patens subsp. patens Chlamydomonas reinhardtii Volvox carteri f. nagariensis Ostreococcus lucimarinus Ostreococcus tauri Cyanidioschyzon merolae Saccharomyces cerevisiae (budding yeast) Ashbya gossypii (Eremothecium gossypii) Eremothecium cymbalariae Kluyveromyces lactis Lachancea thermotolerans Pichia pastoris Vanderwaltozyma polyspora Zygosaccharomyces rouxii Candida glabrata Naumovozyma castellii Naumovozyma dairenensis Tetrapisispora phaffii Tetrapisispora blattae Torulaspora delbrueckii Kazachstania africana Debaryomyces hansenii Scheffersomyces stipitis Meyerozyma guilliermondii Lodderomyces elongisporus Candida albicans Candida tropicalis Candida dubliniensis Candida orthopsilosis Yarrowia lipolytica Clavispora lusitaniae Neurospora crassa Sordaria macrospora Podospora anserina Thielavia terrestris Myceliophthora thermophila Magnaporthe oryzae Fusarium graminearum Nectria haematococca Verticillium albo-atrum Sclerotinia sclerotiorum Botryotinia fuckeliana Aspergillus nidulans Neosartorya fischeri Aspergillus fumigatus Aspergillus oryzae Aspergillus niger Aspergillus flavus Aspergillus clavatus Penicillium chrysogenum Coccidioides immitis Coccidioides posadasii Paracoccidioides brasiliensis Uncinocarpus reesii Arthroderma benhamiae Trichophyton verrucosum Ajellomyces capsulatus Phaeosphaeria nodorum Pyrenophora teres Zymoseptoria tritici Tuber melanosporum Schizosaccharomyces pombe (fission yeast) Cryptococcus neoformans JEC21 Cryptococcus neoformans B-3501A Cryptococcus gattii Postia placenta Laccaria bicolor Moniliophthora perniciosa Coprinopsis cinerea Schizophyllum commune Ustilago maydis Malassezia globosa Puccinia graminis Encephalitozoon cuniculi Encephalitozoon intestinalis Encephalitozoon hellem Nosema ceranae Monosiga brevicollis Naegleria gruberi Dictyostelium discoideum (cellular slime mold) Dictyostelium purpureum (cellular slime mold) Entamoeba histolytica Entamoeba dispar Plasmodium falciparum 3D7 Plasmodium falciparum Dd2 Plasmodium falciparum HB3 Plasmodium yoelii Plasmodium chabaudi Plasmodium berghei Plasmodium knowlesi Plasmodium vivax Plasmodium cynomolgi Theileria annulata Theileria parva Babesia bovis Cryptosporidium parvum Cryptosporidium hominis Toxoplasma gondii Tetrahymena thermophila Paramecium tetraurelia Trypanosoma brucei Trypanosoma cruzi Leishmania major Leishmania infantum Leishmania donovani Leishmania mexicana Leishmania braziliensis Giardia lamblia Trichomonas vaginalis Phaeodactylum tricornutum Thalassiosira pseudonana Phytophthora infestans Escherichia coli K-12 MG1655 Escherichia coli K-12 W3110 Escherichia coli K-12 DH10B Escherichia coli K-12 MC4100(MuLac) BW2952 Escherichia coli K-12 MDS42 Escherichia coli O157:H7 EDL933 (EHEC) Escherichia coli O157:H7 Sakai (EHEC) Escherichia coli O157:H7 EC4115 (EHEC) Escherichia coli O157:H7 TW14359 (EHEC) Escherichia coli O157:H7 Xuzhou21 (EHEC) Escherichia coli O26:H11 11368 (EHEC) Escherichia coli O111:H- 11128 (EHEC) Escherichia coli O103:H2 12009 (EHEC) Escherichia coli O127:H6 E2348/69 (EPEC) Escherichia coli O55:H7 CB9615 (EPEC) Escherichia coli O55:H7 RM12579 (EPEC) Escherichia coli O6:K2:H1 CFT073 (UPEC) Escherichia coli O6:K15:H31 536 (UPEC) Escherichia coli O18:K1:H7 UTI89 (UPEC) Escherichia coli O1:K1:H7 (APEC) Escherichia coli O9 HS (commensal) Escherichia coli O139:H28 E24377A (ETEC) Escherichia coli SMS-3-5 (environmental) Escherichia coli O152:H28 SE11 (commensal) Escherichia coli O8 IAI1 (commensal) Escherichia coli O81 ED1a (commensal) Escherichia coli 55989 (EAEC) Escherichia coli O7:K1 IAI39 (ExPEC) Escherichia coli O7:K1 CE10 Escherichia coli O17:K52:H18 UMN026 (ExPEC) Escherichia coli O45:K1:H7 S88 (ExPEC) Escherichia coli O44:H18 042 Escherichia coli O83:H1 NRG 857C Escherichia coli O78:H11:K80 H10407 (ETEC) Escherichia coli O150:H5 SE15 (commensal) Escherichia coli O104:H4 2009EL-2071 Escherichia coli O104:H4 2009EL-2050 Escherichia coli O104:H4 2011C-3493 Escherichia coli C ATCC 8739 Escherichia coli B REL606 Escherichia coli BL21-Gold(DE3)pLysS AG Escherichia coli KO11FL Escherichia coli KO11FL Escherichia coli ABU 83972 Escherichia coli DH1 Escherichia coli DH1 Escherichia coli IHE3034 Escherichia coli NA114 Escherichia coli UM146 Escherichia coli UMNK88 Escherichia coli W Escherichia coli W Escherichia coli clone D i14 Escherichia coli clone D i2 Escherichia coli P12b Escherichia coli BL21(DE3) Escherichia coli BL21(DE3) Escherichia coli LF82 Escherichia coli APEC O78 Escherichia fergusonii Escherichia blattae DSM 4481 Salmonella enterica subsp. enterica serovar Typhi CT18 Salmonella enterica subsp. enterica serovar Typhi Ty2 Salmonella enterica subsp. enterica serovar Typhi P-stx-12 Salmonella enterica subsp. enterica serovar Typhimurium LT2 Salmonella enterica subsp. enterica serovar Typhimurium 14028S Salmonella enterica subsp. enterica serovar Typhimurium D23580 Salmonella enterica subsp. enterica serovar Typhimurium SL1344 Salmonella enterica subsp. enterica serovar Typhimurium T000240 Salmonella enterica subsp. enterica serovar Typhimurium UK-1 Salmonella enterica subsp. enterica serovar Typhimurium ST4/74 Salmonella enterica subsp. enterica serovar Typhimurium 798 Salmonella enterica subsp. enterica serovar Paratyphi A ATCC9150 Salmonella enterica subsp. enterica serovar Paratyphi A AKU12601 Salmonella enterica subsp. enterica serovar Paratyphi B Salmonella enterica subsp. enterica serovar Paratyphi C Salmonella enterica subsp. enterica serovar Choleraesuis Salmonella enterica subsp. enterica serovar Heidelberg SL476 Salmonella enterica subsp. enterica serovar Heidelberg B182 Salmonella enterica subsp. enterica serovar Newport Salmonella enterica subsp. enterica serovar Schwarzengrund Salmonella enterica subsp. enterica serovar Agona Salmonella enterica subsp. enterica serovar Dublin Salmonella enterica subsp. enterica serovar Gallinarum 287/91 Salmonella enterica subsp. enterica serovar Gallinarum/pullorum RKS5078 Salmonella enterica subsp. enterica serovar Enteritidis Salmonella enterica subsp. enterica serovar Javiana Salmonella enterica subsp. arizonae Salmonella bongori Yersinia pestis CO92 (biovar Orientalis) Yersinia pestis KIM 10 (biovar Mediaevalis) Yersinia pestis Antiqua (biovar Antiqua) Yersinia pestis Nepal516 (biovar Antiqua) Yersinia pestis 91001 (biovar Microtus) Yersinia pestis Pestoides F Yersinia pestis Angola Yersinia pestis Z176003 Yersinia pestis A1122 Yersinia pestis D106004 Yersinia pestis D182038 Yersinia pestis biovar Medievalis Harbin 35 Yersinia pseudotuberculosis IP32953 (serotype I) Yersinia pseudotuberculosis IP31758 (serotype O:1b) Yersinia pseudotuberculosis YPIII Yersinia pseudotuberculosis PB1/+ Yersinia enterocolitica subsp. enterocolitica 8081 Yersinia enterocolitica subsp. palearctica 105.5R(r) Yersinia enterocolitica subsp. palearctica Y11 Shigella flexneri 301 (serotype 2a) Shigella flexneri 2457T (serotype 2a) Shigella flexneri 8401 (serotype 5b) Shigella flexneri 2002017 (serotype Fxv) Shigella sonnei Ss046 Shigella sonnei 53G Shigella boydii Sb227 Shigella boydii CDC 3083-94 Shigella dysenteriae Pectobacterium atrosepticum Pectobacterium carotovorum subsp. carotovorum PC1 Pectobacterium carotovorum subsp. carotovorum PCC21 Pectobacterium wasabiae Pectobacterium sp. SCC3193 Erwinia tasmaniensis Erwinia pyrifoliae Ep1/96 Erwinia pyrifoliae DSM 12163 Erwinia amylovora CFBP1430 Erwinia amylovora ATCC 49946 Erwinia billingiae Erwinia sp. Ejp617 Photorhabdus luminescens Photorhabdus asymbiotica Buchnera aphidicola APS Buchnera aphidicola Sg Buchnera aphidicola Bp Buchnera aphidicola Cc Buchnera aphidicola 5A Buchnera aphidicola Tuc7 Buchnera aphidicola Ak Buchnera aphidicola JF98 Buchnera aphidicola JF99 Buchnera aphidicola LL01 Buchnera aphidicola TLW03 Buchnera aphidicola Ua Buchnera aphidicola (Cinara tujafilina) Wigglesworthia glossinidia brevipalpis Wigglesworthia glossinidia morsitans Sodalis glossinidius Enterobacter sp. 638 Enterobacter cloacae subsp. cloacae ATCC 13047 Enterobacter cloacae subsp. cloacae ENHKU01 Enterobacter cloacae subsp. cloacae NCTC 9394 Enterobacter cloacae SCF1 Enterobacter cloacae EcWSU1 Enterobacter cloacae subsp. dissolvens SDM Enterobacter asburiae Enterobacter aerogenes KCTC 2190 Enterobacter aerogenes EA1509E Cronobacter sakazakii ATCC BAA-894 Cronobacter sakazakii ES15 Cronobacter sakazakii Sp291 Cronobacter turicensis Klebsiella pneumoniae subsp. pneumoniae MGH 78578 Klebsiella pneumoniae NTUH-K2044 Klebsiella pneumoniae subsp. pneumoniae HS11286 Klebsiella pneumoniae subsp. pneumoniae 1084 Klebsiella pneumoniae 342 Klebsiella pneumoniae KCTC 2242 Klebsiella variicola Klebsiella oxytoca KCTC 1686 Citrobacter koseri ATCC BAA-895 Citrobacter rodentium Serratia proteamaculans Serratia plymuthica AS9 Serratia sp. AS12 Serratia sp. AS13 Serratia symbiotica Serratia marcescens FGI94 Serratia marcescens WW4 Proteus mirabilis Edwardsiella ictaluri Edwardsiella tarda EIB202 Edwardsiella tarda FL6-60 Edwardsiella tarda C07-087 Candidatus Blochmannia floridanus Candidatus Blochmannia pennsylvanicus Candidatus Blochmannia vafer Candidatus Blochmannia chromaiodes Candidatus Hamiltonella defensa Dickeya dadantii Ech703 Dickeya dadantii Ech586 Dickeya dadantii 3937 Dickeya zeae Xenorhabdus bovienii Xenorhabdus nematophila Pantoea ananatis LMG 20103 Pantoea ananatis LMG 5342 Pantoea ananatis AJ13355 Pantoea ananatis PA13 Pantoea vagans Pantoea sp. At-9b Candidatus Riesia pediculicola Rahnella sp. Y9602 Rahnella aquatilis CIP 78.65 = ATCC 33071 Rahnella aquatilis HX2 Candidatus Moranella endobia PCIT Candidatus Moranella endobia PCVAL Providencia stuartii Morganella morganii Secondary endosymbiont of Ctenarytaina eucalypti Secondary endosymbiont of Heteropsylla cubana Enterobacteriaceae bacterium FGI 57 Haemophilus influenzae Rd KW20 (serotype d) Haemophilus influenzae 86-028NP (nontypeable) Haemophilus influenzae PittEE (nontypeable) Haemophilus influenzae PittGG (nontypeable) Haemophilus influenzae F3031 (nontypeable) Haemophilus influenzae F3047 (nontypeable) Haemophilus influenzae 10810 (serotype b) Haemophilus influenzae R2846 (nontypeable) Haemophilus influenzae R2866 (nontypeable) Haemophilus ducreyi Haemophilus parasuis Haemophilus parainfluenzae Haemophilus somnus 129PT Haemophilus somnus 2336 Pasteurella multocida subsp. multocida Pm70 Pasteurella multocida subsp. multocida HN06 Pasteurella multocida subsp. multocida 3480 Pasteurella multocida 36950 Mannheimia succiniciproducens Mannheimia haemolytica USDA-ARS-SAM-185 Mannheimia haemolytica USDA-ARS-USMARC-183 Actinobacillus pleuropneumoniae L20 (serotype 5b) Actinobacillus pleuropneumoniae JL03 (serotype 3) Actinobacillus pleuropneumoniae AP76 (serotype 7) Actinobacillus succinogenes Actinobacillus suis Aggregatibacter aphrophilus Aggregatibacter actinomycetemcomitans D11S-1 Aggregatibacter actinomycetemcomitans ANH9381 Aggregatibacter actinomycetemcomitans D7S-1 Gallibacterium anatis Bibersteinia trehalosi Xylella fastidiosa 9a5c Xylella fastidiosa Temecula1 Xylella fastidiosa M12 Xylella fastidiosa M23 Xylella fastidiosa subsp. fastidiosa GB514 Xanthomonas campestris pv. campestris ATCC 33913 Xanthomonas campestris pv. campestris 8004 Xanthomonas campestris pv. campestris B100 Xanthomonas campestris pv. vesicatoria Xanthomonas campestris pv. raphani Xanthomonas axonopodis pv. citri 306 Xanthomonas axonopodis pv. citrumelo F1 Xanthomonas axonopodis Xac29-1 Xanthomonas oryzae pv. oryzae KACC10331 Xanthomonas oryzae pv. oryzae MAFF311018 Xanthomonas oryzae pv. oryzae PXO99A Xanthomonas oryzae pv. oryzicola Xanthomonas albilineans Xanthomonas citri Stenotrophomonas maltophilia K279a Stenotrophomonas maltophilia R551-3 Stenotrophomonas maltophilia JV3 Stenotrophomonas maltophilia D457 Pseudoxanthomonas suwonensis Pseudoxanthomonas spadix Frateuria aurantia Rhodanobacter sp. 2APBS1 Vibrio cholerae O1 biovar El Tor N16961 Vibrio cholerae O1 2010EL-1786 Vibrio cholerae MJ-1236 Vibrio cholerae O395 Vibrio cholerae O395 Vibrio cholerae M66-2 Vibrio cholerae IEC224 Vibrio cholerae LMA3984-4 Vibrio vulnificus CMCP6 Vibrio vulnificus YJ016 Vibrio vulnificus MO6-24/O Vibrio parahaemolyticus RIMD 2210633 Vibrio parahaemolyticus BB22OP Vibrio harveyi Vibrio splendidus Vibrio sp. Ex25 Vibrio sp. EJY3 Vibrio furnissii Vibrio fischeri ES114 Vibrio fischeri MJ11 Aliivibrio salmonicida LFI1238 Photobacterium profundum Vibrio anguillarum Pseudomonas aeruginosa PAO1 Pseudomonas aeruginosa UCBPP-PA14 Pseudomonas aeruginosa PA7 Pseudomonas aeruginosa LESB58 Pseudomonas aeruginosa M18 Pseudomonas aeruginosa NCGM2.S1 Pseudomonas aeruginosa DK2 Pseudomonas putida KT2440 Pseudomonas putida F1 Pseudomonas putida GB-1 Pseudomonas putida W619 Pseudomonas putida S16 Pseudomonas putida BIRD-1 Pseudomonas putida ND6 Pseudomonas putida DOT-T1E Pseudomonas putida HB3267 Pseudomonas putida UW4 Pseudomonas syringae pv. tomato DC3000 Pseudomonas syringae pv. syringae B728a Pseudomonas syringae pv. phaseolicola 1448A Pseudomonas protegens Pf-5 Pseudomonas fluorescens Pf0-1 Pseudomonas fluorescens SBW25 Pseudomonas fluorescens F113 Pseudomonas fluorescens A506 Pseudomonas poae Pseudomonas entomophila Pseudomonas mendocina ymp Pseudomonas mendocina NK-01 Pseudomonas stutzeri A1501 Pseudomonas stutzeri ATCC 17588 Pseudomonas stutzeri DSM 4166 Pseudomonas stutzeri CCUG 29243 Pseudomonas stutzeri DSM 10701 Pseudomonas stutzeri RCH2 Pseudomonas brassicacearum Pseudomonas fulva Pseudomonas denitrificans Cellvibrio japonicus Azotobacter vinelandii DJ Psychrobacter arcticus Psychrobacter cryohalolentis Psychrobacter sp. PRwf-1 Acinetobacter sp. ADP1 Acinetobacter oleivorans Acinetobacter baumannii ATCC 17978 Acinetobacter baumannii SDF Acinetobacter baumannii AYE Acinetobacter baumannii ACICU Acinetobacter baumannii AB0057 Acinetobacter baumannii AB307-0294 Acinetobacter baumannii 1656-2 Acinetobacter baumannii MDR-ZJ06 Acinetobacter baumannii MDR-TJ Acinetobacter baumannii TCDC-AB0715 Acinetobacter baumannii TYTH-1 Acinetobacter baumannii D1279779 Acinetobacter calcoaceticus Moraxella catarrhalis Shewanella oneidensis Shewanella denitrificans Shewanella frigidimarina Shewanella amazonensis Shewanella baltica OS155 Shewanella baltica OS185 Shewanella baltica OS195 Shewanella baltica OS223 Shewanella baltica OS678 Shewanella baltica OS117 Shewanella baltica BA175 Shewanella loihica Shewanella putrefaciens CN-32 Shewanella putrefaciens 200 Shewanella sediminis Shewanella pealeana Shewanella sp. MR-4 Shewanella sp. MR-7 Shewanella sp. ANA-3 Shewanella sp. W3-18-1 Shewanella halifaxensis Shewanella woodyi ATCC 51908 Shewanella piezotolerans WP3 Shewanella violacea Idiomarina loihiensis Colwellia psychrerythraea Pseudoalteromonas haloplanktis Pseudoalteromonas atlantica Pseudoalteromonas sp. SM9913 Saccharophagus degradans Marinobacter aquaeolei Marinobacter hydrocarbonoclasticus Marinobacter adhaerens Marinobacter sp. BSs20148 Alteromonas macleodii Deep ecotype Alteromonas macleodii ATCC 27126 Alteromonas macleodii Balearic Sea AD45 Alteromonas macleodii English Channel 673 Alteromonas macleodii Black Sea 11 Alteromonas macleodii AltDE1 Alteromonas sp. SN2 Glaciecola sp. 4H-3-7+YE-5 Glaciecola nitratireducens Glaciecola psychrophila Psychromonas ingrahamii Psychromonas sp. CNPT3 Teredinibacter turnerae Ferrimonas balearica Coxiella burnetii RSA 493 Coxiella burnetii RSA 331 Coxiella burnetii Dugway 5J108-111 Coxiella burnetii CbuG_Q212 Coxiella burnetii CbuK_Q154 Legionella pneumophila subsp. pneumophila Philadelphia 1 Legionella pneumophila subsp. pneumophila Philadelphia 1 Legionella pneumophila Lens Legionella pneumophila Paris Legionella pneumophila Corby Legionella pneumophila 2300/99 Alcoy Legionella pneumophila subsp. pneumophila ATCC 43290 Legionella longbeachae Methylococcus capsulatus Methylomonas methanica Methylomicrobium alcaliphilum Francisella tularensis subsp. tularensis SCHU S4 Francisella tularensis subsp. tularensis FSC 198 Francisella tularensis subsp. tularensis WY96-3418 Francisella tularensis subsp. tularensis NE061598 Francisella tularensis subsp. tularensis TI0902 Francisella tularensis TIGB03 Francisella tularensis subsp. holarctica LVS Francisella tularensis subsp. holarctica OSU18 Francisella tularensis subsp. holarctica FTNF002-00 Francisella tularensis subsp. holarctica F92 Francisella tularensis subsp. holarctica FSC200 Francisella tularensis subsp. mediasiatica FSC147 Francisella novicida U112 Francisella cf. novicida Fx1 Francisella cf. novicida 3523 Francisella philomiragia Francisella sp. TX077308 Francisella noatunensis Thiomicrospira crunogena Thioalkalimicrobium cyclicum Methylophaga sp. JAM1 Methylophaga sp. JAM7 Cycloclasticus sp. P1 Nitrosococcus oceani Nitrosococcus halophilus Nitrosococcus watsonii Allochromatium vinosum Thiocystis violascens Thioflavicoccus mobilis Alkalilimnicola ehrlichei Halorhodospira halophila Thioalkalivibrio sp. HL-EbGR7 Thioalkalivibrio sp. K90mix Thioalkalivibrio nitratireducens Halothiobacillus neapolitanus Hahella chejuensis Chromohalobacter salexigens Halomonas elongata Candidatus Portiera aleyrodidarum BT-B Candidatus Portiera aleyrodidarum BT-B-HRs Candidatus Portiera aleyrodidarum BT-QVLC Candidatus Portiera aleyrodidarum BT-QVLC Candidatus Portiera aleyrodidarum TV Alcanivorax borkumensis Alcanivorax dieselolei Kangiella koreensis Marinomonas sp. MWYL1 Marinomonas mediterranea Marinomonas posidonica Thalassolituus oleivorans Aeromonas hydrophila Aeromonas salmonicida Aeromonas veronii Tolumonas auensis Oceanimonas sp. GK1 Dichelobacter nodosus Acidithiobacillus ferrooxidans ATCC 53993 Acidithiobacillus ferrooxidans ATCC 23270 Acidithiobacillus caldus Acidithiobacillus ferrivorans Baumannia cicadellinicola Candidatus Carsonella ruddii PV Candidatus Carsonella ruddii CE isolate Thao2000 Candidatus Carsonella ruddii CS isolate Thao2000 Candidatus Carsonella ruddii HT isolate Thao2000 Candidatus Carsonella ruddii HC isolate Thao2000 Candidatus Carsonella ruddii PC isolate NHV Simiduia agarivorans Candidatus Ruthia magnifica Candidatus Vesicomyosocius okutanii Gamma proteobacterium HdN1 Neisseria meningitidis Z2491 (serogroup A) Neisseria meningitidis MC58 (serogroup B) Neisseria meningitidis alpha710 (serogroup B) Neisseria meningitidis H44/76 (serogroup B) Neisseria meningitidis FAM18 (serogroup C) Neisseria meningitidis 053442 (serogroup C) Neisseria meningitidis 8013 (serogroup C) Neisseria meningitidis alpha14 (cnl strain) Neisseria meningitidis G2136 (serogroup B) Neisseria meningitidis M01-240149 (serogroup B) Neisseria meningitidis M01-240355 (serogroup B) Neisseria meningitidis M04-240196 (serogroup B) Neisseria meningitidis WUE 2594 (serogroup A) Neisseria meningitidis NZ-05/33 (serogroup B) Neisseria gonorrhoeae FA 1090 Neisseria gonorrhoeae NCCP11945 Neisseria gonorrhoeae TCDC-NG08107 Neisseria lactamica Chromobacterium violaceum Laribacter hongkongensis Pseudogulbenkiania sp. NH8B Ralstonia solanacearum GMI1000 Ralstonia solanacearum CFBP2957 Ralstonia solanacearum PSI07 Ralstonia solanacearum Po82 Ralstonia pickettii 12J Ralstonia pickettii 12D Ralstonia eutropha JMP134 Ralstonia eutropha H16 Cupriavidus metallidurans Cupriavidus taiwanensis Cupriavidus necator Burkholderia mallei ATCC 23344 Burkholderia mallei SAVP1 Burkholderia mallei NCTC 10229 Burkholderia mallei NCTC 10247 Burkholderia pseudomallei K96243 Burkholderia pseudomallei 1710b Burkholderia pseudomallei 1106a Burkholderia pseudomallei 668 Burkholderia pseudomallei MSHR346 Burkholderia pseudomallei 1026b Burkholderia pseudomallei BPC006 Burkholderia thailandensis E264 Burkholderia vietnamiensis Burkholderia sp. 383 Burkholderia cenocepacia AU1054 Burkholderia cenocepacia HI2424 Burkholderia cenocepacia MC0-3 Burkholderia cenocepacia J2315 Burkholderia ambifaria AMMD Burkholderia ambifaria MC40-6 Burkholderia multivorans ATCC 17616 (JGI) Burkholderia multivorans ATCC 17616 (Tohoku) Burkholderia cepacia Burkholderia xenovorans Burkholderia phymatum Burkholderia phytofirmans Burkholderia glumae Burkholderia sp. CCGE1001 Burkholderia sp. CCGE1002 Burkholderia sp. CCGE1003 Burkholderia rhizoxinica Burkholderia gladioli Burkholderia sp. YI23 Burkholderia sp. KJ006 Burkholderia phenoliruptrix Polynucleobacter sp. QLW-P1DMWA-1 Polynucleobacter necessarius Bordetella pertussis Tohama I Bordetella pertussis CS Bordetella pertussis 18323 Bordetella parapertussis 12822 Bordetella parapertussis Bpp5 Bordetella bronchiseptica RB50 Bordetella bronchiseptica MO149 Bordetella bronchiseptica 253 Bordetella petrii Bordetella avium Achromobacter xylosoxidans Taylorella equigenitalis MCE9 Taylorella equigenitalis ATCC 35865 Taylorella equigenitalis 14/56 Taylorella asinigenitalis MCE3 Taylorella asinigenitalis 14/45 Pusillimonas sp. T7-7 Advenella kashmirensis Rhodoferax ferrireducens Polaromonas sp. JS666 Polaromonas naphthalenivorans Acidovorax avenae Acidovorax sp. JS42 Acidovorax ebreus Acidovorax avenae subsp. avenae ATCC 19860 Acidovorax sp. KKS102 Verminephrobacter eiseniae Delftia acidovorans Delftia sp. Cs1-4 Variovorax paradoxus S110 Variovorax paradoxus EPS Comamonas testosteroni Alicycliphilus denitrificans BC Alicycliphilus denitrificans K601 Ramlibacter tataouinensis Methylibium petroleiphilum Herminiimonas arsenicoxydans Minibacterium massiliensis Herbaspirillum seropedicae Candidatus Zinderia insecticola CARI Collimonas fungivorans Leptothrix cholodnii Thiomonas intermedia Thiomonas sp. 3As Rubrivivax gelatinosus Nitrosomonas europaea Nitrosomonas eutropha Nitrosomonas sp. AL212 Nitrosomonas sp. Is79A3 Nitrosospira multiformis Aromatoleum aromaticum EbN1 Azoarcus sp. BH72 Azoarcus sp. KH32C Dechloromonas aromatica Thauera sp. MZ1T Dechlorosoma suillum Thiobacillus denitrificans Methylobacillus flagellatus Methylotenera mobilis Methylotenera versatilis Methylovorus glucosetrophus SIP3-4 Methylovorus sp. MP688 Accumulibacter phosphatis Candidatus Tremblaya princeps PCIT Candidatus Tremblaya princeps PCVAL Sideroxydans lithotrophicus Gallionella capsiferriformans Candidatus Kinetoplastibacterium crithidii (ex Angomonas deanei ATCC 30255) Candidatus Kinetoplastibacterium crithidii TCC036E Candidatus Kinetoplastibacterium blastocrithidii (ex Strigomonas culicis) Candidatus Kinetoplastibacterium blastocrithidii TCC012E Candidatus Kinetoplastibacterium desouzaii Candidatus Kinetoplastibacterium galatii Candidatus Kinetoplastibacterium oncopeltii Beta proteobacterium CB Helicobacter pylori 26695 Helicobacter pylori 26695 Helicobacter pylori J99 Helicobacter pylori HPAG1 Helicobacter pylori Shi470 Helicobacter pylori Shi112 Helicobacter pylori Shi169 Helicobacter pylori Shi417 Helicobacter pylori G27 Helicobacter pylori P12 Helicobacter pylori B38 Helicobacter pylori B8 Helicobacter pylori PeCan4 Helicobacter pylori PeCan18 Helicobacter pylori SJM180 Helicobacter pylori ELS37 Helicobacter pylori 35A Helicobacter pylori 908 Helicobacter pylori 2017 Helicobacter pylori 2018 Helicobacter pylori Cuz20 Helicobacter pylori F16 Helicobacter pylori F30 Helicobacter pylori F32 Helicobacter pylori F57 Helicobacter pylori Sat464 Helicobacter pylori 52 Helicobacter pylori v225d Helicobacter pylori 83 Helicobacter pylori SNT49 Helicobacter pylori Lithuania75 Helicobacter pylori Gambia94/24 Helicobacter pylori India7 Helicobacter pylori Puno120 Helicobacter pylori Puno135 Helicobacter pylori SouthAfrica7 Helicobacter pylori HUP-B14 Helicobacter pylori 51 Helicobacter pylori XZ274 Helicobacter pylori Rif1 Helicobacter pylori Rif2 Helicobacter pylori Aklavik117 Helicobacter pylori Aklavik86 Helicobacter pylori OK113 Helicobacter pylori OK310 Helicobacter hepaticus Helicobacter acinonychis Helicobacter mustelae Helicobacter felis Helicobacter bizzozeronii Helicobacter cetorum MIT 00-7128 Helicobacter cetorum MIT 99-5656 Helicobacter cinaedi PAGU611 Helicobacter cinaedi ATCC BAA-847 Wolinella succinogenes Sulfurimonas denitrificans Sulfurimonas autotrophica Sulfuricurvum kujiense Uncultured Sulfuricurvum sp. RIFRC-1 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 Campylobacter jejuni subsp. jejuni NCTC 11168-BN148 Campylobacter jejuni subsp. jejuni 81-176 Campylobacter jejuni subsp. jejuni 81116 Campylobacter jejuni subsp. jejuni ICDCCJ07001 Campylobacter jejuni subsp. jejuni IA3902 Campylobacter jejuni subsp. jejuni M1 Campylobacter jejuni subsp. jejuni S3 Campylobacter jejuni subsp. jejuni PT14 Campylobacter jejuni RM1221 Campylobacter jejuni subsp. doylei 269.97 Campylobacter fetus Campylobacter curvus Campylobacter hominis ATCC BAA-381 Campylobacter concisus 13826 Campylobacter lari Arcobacter butzleri RM4018 Arcobacter butzleri ED-1 Arcobacter nitrofigilis Arcobacter sp. L Sulfurospirillum deleyianum Sulfurospirillum barnesii Nitratifractor salsuginis Nitratiruptor sp. SB155-2 Sulfurovum sp. NBC37-1 Nautilia profundicola Geobacter sulfurreducens PCA Geobacter sulfurreducens KN400 Geobacter metallireducens Geobacter uraniireducens Geobacter lovleyi Geobacter bemidjiensis Geobacter sp. FRC-32 Geobacter sp. M21 Geobacter sp. M18 Pelobacter carbinolicus Pelobacter propionicus Desulfovibrio vulgaris Hildenborough Desulfovibrio vulgaris DP4 Desulfovibrio vulgaris Miyazaki F Desulfovibrio vulgaris RCH1 Desulfovibrio desulfuricans G20 Desulfovibrio desulfuricans ATCC 27774 Desulfovibrio desulfuricans ND132 Desulfovibrio magneticus Desulfovibrio salexigens Desulfovibrio aespoeensis Desulfovibrio africanus Desulfovibrio hydrothermalis Desulfovibrio piezophilus Lawsonia intracellularis PHE/MN1-00 Lawsonia intracellularis N343 Desulfomicrobium baculatum Desulfohalobium retbaense Bdellovibrio bacteriovorus HD100 Bdellovibrio bacteriovorus Tiberius Bdellovibrio exovorus Bacteriovorax marinus SJ Desulfotalea psychrophila Desulfurivibrio alkaliphilus Desulfobulbus propionicus Desulfocapsa sulfexigens Candidatus Desulfococcus oleovorans Desulfatibacillum alkenivorans Desulfobacterium autotrophicum Desulfobacula toluolica Anaeromyxobacter dehalogenans 2CP-C Anaeromyxobacter dehalogenans 2CP-1 Anaeromyxobacter sp. Fw109-5 Anaeromyxobacter sp. K Myxococcus xanthus Myxococcus fulvus Myxococcus stipitatus Corallococcus coralloides Stigmatella aurantiaca Sorangium cellulosum Haliangium ochraceum Syntrophus aciditrophicus Desulfobacca acetoxidans DSM 11109 Desulfomonile tiedjei Syntrophobacter fumaroxidans Desulfarculus baarsii Hippea maritima Rickettsia prowazekii Madrid E Rickettsia prowazekii BuV67-CWPP Rickettsia prowazekii Chernikova Rickettsia prowazekii Dachau Rickettsia prowazekii GvV257 Rickettsia prowazekii Katsinyian Rickettsia prowazekii RpGvF24 Rickettsia prowazekii Rp22 Rickettsia prowazekii Breinl Rickettsia prowazekii NMRC Madrid E Rickettsia typhi Wilmington Rickettsia typhi TH1527 Rickettsia typhi B9991CWPP Rickettsia canadensis McKiel Rickettsia canadensis CA410 Rickettsia bellii RML369-C Rickettsia bellii OSU 85-389 Rickettsia conorii Rickettsia felis Rickettsia akari Rickettsia rickettsii Sheila Smith Rickettsia rickettsii Iowa Rickettsia rickettsii Arizona Rickettsia rickettsii Colombia Rickettsia rickettsii Hauke Rickettsia rickettsii Brazil Rickettsia rickettsii Hino Rickettsia rickettsii Hlp#2 Rickettsia massiliae MTU5 Rickettsia massiliae AZT80 Rickettsia peacockii Rickettsia africae Rickettsia heilongjiangensis Rickettsia japonica Rickettsia slovaca 13-B Rickettsia slovaca D-CWPP Rickettsia philipii Rickettsia australis Rickettsia montanensis Rickettsia parkeri Rickettsia rhipicephali Candidatus Rickettsia amblyommii Orientia tsutsugamushi Boryong Orientia tsutsugamushi Ikeda Wolbachia wMel Wolbachia wBm Wolbachia wOo Wolbachia sp. wRi Wolbachia pipientis Anaplasma marginale St. Maries Anaplasma marginale Florida Anaplasma centrale Anaplasma phagocytophilum Ehrlichia ruminantium Welgevonden (South Africa) Ehrlichia ruminantium Welgevonden (France) Ehrlichia ruminantium Gardel Ehrlichia canis Ehrlichia chaffeensis Neorickettsia sennetsu Neorickettsia risticii Candidatus Pelagibacter ubique Candidatus Pelagibacter sp. IMCC9063 Candidatus Midichloria mitochondrii Mesorhizobium loti Mesorhizobium ciceri Mesorhizobium opportunistum Mesorhizobium australicum Mesorhizobium sp. BNC1 Parvibaculum lavamentivorans Sinorhizobium meliloti 1021 Sinorhizobium meliloti AK83 Sinorhizobium meliloti BL225C Sinorhizobium meliloti SM11 Sinorhizobium meliloti Rm41 Sinorhizobium meliloti GR4 Sinorhizobium meliloti 2011 Sinorhizobium medicae Sinorhizobium fredii NGR234 Sinorhizobium fredii HH103 Sinorhizobium fredii USDA 257 Agrobacterium tumefaciens C58 Agrobacterium radiobacter K84 Agrobacterium vitis S4 Agrobacterium sp. H13-3 Rhizobium etli CFN 42 Rhizobium etli CIAT 652 Rhizobium leguminosarum bv. viciae 3841 Rhizobium leguminosarum bv. trifolii WSM2304 Rhizobium leguminosarum bv. trifolii WSM1325 Rhizobium tropici Candidatus Liberibacter asiaticus psy62 Candidatus Liberibacter asiaticus gxpsy Candidatus Liberibacter solanacearum Liberibacter crescens Brucella melitensis bv. 1 16M Brucella melitensis ATCC 23457 Brucella melitensis M28 Brucella melitensis M5-90 Brucella melitensis NI Brucella melitensis biovar Abortus Brucella abortus 9-941 Brucella abortus S19 Brucella abortus A13334 Brucella suis 1330 Brucella suis 1330 Brucella suis ATCC 23445 Brucella suis VBI22 Brucella ovis Brucella canis ATCC 23365 Brucella canis HSK A52141 Brucella microti Brucella pinnipedialis Ochrobactrum anthropi Bradyrhizobium japonicum USDA110 Bradyrhizobium japonicum USDA 6 Bradyrhizobium sp. ORS 278 Bradyrhizobium sp. BTAi1 Bradyrhizobium sp. S23321 Rhodopseudomonas palustris CGA009 Rhodopseudomonas palustris HaA2 Rhodopseudomonas palustris BisB18 Rhodopseudomonas palustris BisB5 Rhodopseudomonas palustris BisA53 Rhodopseudomonas palustris TIE-1 Rhodopseudomonas palustris DX-1 Nitrobacter winogradskyi Nitrobacter hamburgensis Oligotropha carboxidovorans OM5 (Mississippi) Oligotropha carboxidovorans OM5 (Goettingen) Oligotropha carboxidovorans OM4 Agromonas oligotrophica Bartonella henselae Bartonella quintana Toulouse Bartonella quintana RM-11 Bartonella bacilliformis Bartonella tribocorum Bartonella grahamii Bartonella clarridgeiae Bartonella australis Bartonella vinsonii Xanthobacter autotrophicus Azorhizobium caulinodans Starkeya novella Methylobacterium extorquens PA1 Methylobacterium extorquens AM1 Methylobacterium extorquens DM4 Methylobacterium extorquens CM4 Methylobacterium radiotolerans Methylobacterium sp. 4-46 Methylobacterium populi Methylobacterium nodulans Beijerinckia indica Methylocella silvestris Hyphomicrobium denitrificans ATCC 51888 Hyphomicrobium sp. MC1 Rhodomicrobium vannielii Pelagibacterium halotolerans Methylocystis sp. SC2 Candidatus Hodgkinia cicadicola Caulobacter crescentus CB15 Caulobacter crescentus NA1000 Caulobacter sp. K31 Caulobacter segnis Phenylobacterium zucineum Brevundimonas subvibrioides Asticcacaulis excentricus Ruegeria pomeroyi Ruegeria sp. TM1040 Rhodobacter sphaeroides 2.4.1 Rhodobacter sphaeroides ATCC 17029 Rhodobacter sphaeroides ATCC 17025 Rhodobacter sphaeroides KD131 Rhodobacter capsulatus Jannaschia sp. CCS1 Roseobacter denitrificans Roseobacter litoralis Och 149 Paracoccus denitrificans Dinoroseobacter shibae Ketogulonicigenium vulgare Ketogulonigenium vulgarum Pseudovibrio sp. FO-BEG1 Phaeobacter gallaeciensis DSM 17395 Phaeobacter gallaeciensis 2.10 Octadecabacter antarcticus Octadecabacter arcticus Maricaulis maris Hyphomonas neptunium Hirschia baltica Zymomonas mobilis subsp. mobilis ZM4 Zymomonas mobilis subsp. mobilis NCIMB 11163 Zymomonas mobilis subsp. mobilis ATCC 10988 Zymomonas mobilis subsp. mobilis ATCC 29191 Zymomonas mobilis subsp. pomaceae ATCC 29192 Novosphingobium aromaticivorans Novosphingobium sp. PP1Y Sphingopyxis alaskensis Sphingomonas wittichii Sphingomonas sp. MM-1 Sphingobium japonicum Sphingobium chlorophenolicum Sphingobium sp. SYK-6 Erythrobacter litoralis Gluconobacter oxydans 621H Gluconobacter oxydans H24 Granulibacter bethesdensis Acidiphilium cryptum JF-5 Acidiphilium multivorum Gluconacetobacter diazotrophicus PAl 5 (Brazil) Gluconacetobacter diazotrophicus PAl 5 (JGI) Gluconacetobacter xylinus Acetobacter pasteurianus IFO 3283-01 Acetobacter pasteurianus IFO 3283-01-42C Acetobacter pasteurianus IFO 3283-03 Acetobacter pasteurianus IFO 3283-07 Acetobacter pasteurianus IFO 3283-12 Acetobacter pasteurianus IFO 3283-22 Acetobacter pasteurianus IFO 3283-26 Acetobacter pasteurianus IFO 3283-32 Rhodospirillum rubrum ATCC 11170 Rhodospirillum rubrum F11 Rhodospirillum centenum Rhodospirillum photometricum Magnetospirillum magneticum Azospirillum sp. B510 Azospirillum lipoferum 4B Azospirillum brasilense Tistrella mobilis Endolissoclinum patella Parvularcula bermudensis Candidatus Puniceispirillum marinum Polymorphum gilvum Micavibrio aeruginosavorus ARL-13 Micavibrio aeruginosavorus EPB Alpha proteobacterium HIMB59 Alpha proteobacterium HIMB5 Magnetococcus marinus MC-1 Desulfurispirillum indicum Bacillus subtilis subsp. subtilis 168 Bacillus subtilis subsp. subtilis RO-NN-1 Bacillus subtilis subsp. subtilis BSP1 Bacillus subtilis subsp. subtilis 6051-HGW Bacillus subtilis subsp. subtilis BAB-1 Bacillus subtilis subsp. spizizenii W23 Bacillus subtilis subsp. spizizenii TU-B-10 Bacillus subtilis subsp. natto BEST195 Bacillus subtilis BSn5 Bacillus subtilis QB928 Bacillus subtilis BEST7613 Bacillus subtilis XF-1 Bacillus licheniformis ATCC 14580 Bacillus licheniformis DSM13 Bacillus amyloliquefaciens DSM 7 Bacillus amyloliquefaciens FZB42 Bacillus amyloliquefaciens subsp. plantarum CAU B946 Bacillus amyloliquefaciens subsp. plantarum YAU B9601-Y2 Bacillus amyloliquefaciens subsp. plantarum AS43.3 Bacillus amyloliquefaciens subsp. plantarum UCMB5036 Bacillus amyloliquefaciens TA208 Bacillus amyloliquefaciens LL3 Bacillus amyloliquefaciens XH7 Bacillus amyloliquefaciens Y2 Bacillus amyloliquefaciens IT-45 Bacillus atrophaeus Bacillus halodurans Bacillus anthracis Ames Bacillus anthracis Ames 0581 Bacillus anthracis Sterne Bacillus anthracis CDC 684 Bacillus anthracis A0248 Bacillus anthracis H9401 Bacillus cereus biovar anthracis CI Bacillus cereus ATCC 14579 Bacillus cereus ATCC 10987 Bacillus cereus ZK Bacillus cereus AH187 Bacillus cereus B4264 Bacillus cereus AH820 Bacillus cereus G9842 Bacillus cereus Q1 Bacillus cereus 03BB102 Bacillus cereus NC7401 Bacillus cereus F837/76 Bacillus cereus FRI-35 Bacillus cytotoxicus NVH 391-98 Bacillus thuringiensis 97-27 Bacillus thuringiensis Al Hakam Bacillus thuringiensis BMB171 Bacillus thuringiensis serovar kurstaki HD73 Bacillus thuringiensis serovar chinensis CT-43 Bacillus thuringiensis serovar finitimus YBT-020 Bacillus thuringiensis MC28 Bacillus thuringiensis Bt407 Bacillus thuringiensis HD-771 Bacillus thuringiensis HD-789 Bacillus thuringiensis serovar thuringiensis IS5056 Bacillus weihenstephanensis Bacillus clausii Bacillus pumilus Bacillus pseudofirmus Bacillus megaterium QM B1551 Bacillus megaterium DSM 319 Bacillus megaterium WSH-002 Bacillus selenitireducens Bacillus cellulosilyticus Bacillus coagulans 2-6 Bacillus coagulans 36D1 Bacillus sp. JS Oceanobacillus iheyensis Geobacillus kaustophilus Geobacillus thermodenitrificans Geobacillus thermoglucosidasius Geobacillus thermoleovorans Geobacillus sp. WCH70 Geobacillus sp. Y412MC61 Geobacillus sp. Y412MC52 Geobacillus sp. C56-T3 Geobacillus sp. Y4.1MC1 Geobacillus sp. GHH01 Anoxybacillus flavithermus Amphibacillus xylanus Staphylococcus aureus subsp. aureus N315 (MRSA/VSSA) Staphylococcus aureus subsp. aureus Mu50 (MRSA/VISA) Staphylococcus aureus subsp. aureus Mu3 (MRSA/hetero-VISA) Staphylococcus aureus subsp. aureus JH1 (MRSA/VSSA) Staphylococcus aureus subsp. aureus JH9 (MRSA/VRSA) Staphylococcus aureus subsp. aureus MW2 (CA-MRSA) Staphylococcus aureus subsp. aureus MSSA476 (MSSA) Staphylococcus aureus subsp. aureus MRSA252 (MRSA) Staphylococcus aureus subsp. aureus COL (MRSA) Staphylococcus aureus subsp. aureus USA300_TCH1516 (CA-MSSA) Staphylococcus aureus subsp. aureus USA300_FPR3757 (CA-MRSA) Staphylococcus aureus subsp. aureus NCTC8325 Staphylococcus aureus subsp. aureus Newman Staphylococcus aureus subsp. aureus ED98 Staphylococcus aureus subsp. aureus M013 (CA-MRSA) Staphylococcus aureus subsp. aureus VC40 Staphylococcus aureus subsp. aureus MSHR1132 Staphylococcus aureus subsp. aureus ED133 Staphylococcus aureus subsp. aureus JKD6159 Staphylococcus aureus subsp. aureus JKD6008 (MRSA/VISA) Staphylococcus aureus subsp. aureus ECT-R 2 Staphylococcus aureus subsp. aureus T0131 (MRSA) Staphylococcus aureus subsp. aureus TCH60 Staphylococcus aureus subsp. aureus 11819-97 (CA-MRSA) Staphylococcus aureus subsp. aureus 71193 Staphylococcus aureus subsp. aureus HO 5096 0412 Staphylococcus aureus subsp. aureus TW20 (MRSA) Staphylococcus aureus subsp. aureus ST398 (MRSA) Staphylococcus aureus subsp. aureus LGA251 Staphylococcus aureus RF122 Staphylococcus aureus 04-02981 Staphylococcus aureus 08BA02176 Staphylococcus aureus M1 Staphylococcus epidermidis ATCC 12228 Staphylococcus epidermidis RP62A Staphylococcus haemolyticus Staphylococcus saprophyticus Staphylococcus carnosus Staphylococcus lugdunensis HKU09-01 Staphylococcus lugdunensis N920143 Staphylococcus pseudintermedius HKU10-03 Staphylococcus pseudintermedius ED99 Staphylococcus warneri Listeria monocytogenes EGD-e Listeria monocytogenes F2365 Listeria monocytogenes HCC23 Listeria monocytogenes Clip81459 Listeria monocytogenes 08-5578 Listeria monocytogenes 08-5923 Listeria monocytogenes 10403S Listeria monocytogenes FSL R2-561 Listeria monocytogenes Finland 1998 Listeria monocytogenes J0161 Listeria monocytogenes M7 Listeria monocytogenes L99 Listeria monocytogenes 07PF0776 Listeria monocytogenes SLCC2755 Listeria monocytogenes SLCC2372 Listeria monocytogenes serotype 7 SLCC2482 Listeria monocytogenes SLCC2376 Listeria monocytogenes SLCC5850 Listeria monocytogenes SLCC7179 Listeria monocytogenes SLCC2378 Listeria monocytogenes SLCC2479 Listeria monocytogenes SLCC2540 Listeria monocytogenes ATCC 19117 Listeria monocytogenes L312 Listeria monocytogenes serotype 4b LL195 Listeria monocytogenes La111 Listeria monocytogenes N53-1 Listeria innocua Listeria welshimeri SLCC5334 Listeria seeligeri Listeria ivanovii Lysinibacillus sphaericus Halobacillus halophilus Exiguobacterium sibiricum Exiguobacterium sp. AT1b Exiguobacterium antarcticum Macrococcus caseolyticus Brevibacillus brevis Paenibacillus sp. JDR-2 Paenibacillus sp. Y412MC10 Paenibacillus polymyxa E681 Paenibacillus polymyxa SC2 Paenibacillus polymyxa M1 Paenibacillus mucilaginosus KNP414 Paenibacillus mucilaginosus 3016 Paenibacillus mucilaginosus K02 Paenibacillus terrae Thermobacillus composti Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1 Kyrpidia tusciae Solibacillus silvestris Lactococcus lactis subsp. lactis IL1403 Lactococcus lactis subsp. lactis KF147 Lactococcus lactis subsp. lactis CV56 Lactococcus lactis subsp. lactis IO-1 Lactococcus lactis subsp. cremoris SK11 Lactococcus lactis subsp. cremoris MG1363 Lactococcus lactis subsp. cremoris A76 Lactococcus lactis subsp. cremoris NZ9000 Lactococcus lactis subsp. cremoris UC509.9 Lactococcus garvieae ATCC 49156 Lactococcus garvieae Lg2 Streptococcus pyogenes SF370 (serotype M1) Streptococcus pyogenes MGAS5005 (serotype M1) Streptococcus pyogenes M1 476 (serotype M1) Streptococcus pyogenes MGAS8232 (serotype M18) Streptococcus pyogenes MGAS315 (serotype M3) Streptococcus pyogenes SSI-1 (serotype M3) Streptococcus pyogenes MGAS10270 (serotype M2) Streptococcus pyogenes MGAS10750 (serotype M4) Streptococcus pyogenes MGAS2096 (serotype M12) Streptococcus pyogenes MGAS9429 (serotype M12) Streptococcus pyogenes Manfredo (serotype M5) Streptococcus pyogenes MGAS10394 (serotype M6) Streptococcus pyogenes MGAS6180 (serotype M28) Streptococcus pyogenes MGAS15252 (serotype M59) Streptococcus pyogenes NZ131 (serotype M49) Streptococcus pyogenes Alab49 (serotype M53) Streptococcus pyogenes MGAS1882 Streptococcus pyogenes A20 Streptococcus pneumoniae TIGR4 (virulent serotype 4) Streptococcus pneumoniae D39 (virulent serotype 2) Streptococcus pneumoniae R6 (avirulent) Streptococcus pneumoniae CGSP14 (serotype 14) Streptococcus pneumoniae G54 (serotype 19F) Streptococcus pneumoniae ATCC 700669 (serotype 23F ST81 lineage) Streptococcus pneumoniae Hungary19A 6 Streptococcus pneumoniae 70585 Streptococcus pneumoniae JJA Streptococcus pneumoniae P1031 Streptococcus pneumoniae Taiwan19F-14 Streptococcus pneumoniae TCH8431/19A Streptococcus pneumoniae 670-6B Streptococcus pneumoniae AP200 Streptococcus pneumoniae INV104 Streptococcus pneumoniae INV200 Streptococcus pneumoniae OXC141 Streptococcus pneumoniae ST556 Streptococcus pneumoniae SPNA45 Streptococcus pneumoniae gamPNI0373 Streptococcus agalactiae 2603 (serotype V) Streptococcus agalactiae NEM316 (serotype III) Streptococcus agalactiae A909 (serotype Ia) Streptococcus agalactiae GD201008-001 (serotype Ia) Streptococcus agalactiae SA20-06 Streptococcus mutans UA159 Streptococcus mutans NN2025 Streptococcus mutans LJ23 Streptococcus mutans GS-5 Streptococcus thermophilus CNRZ1066 Streptococcus thermophilus LMG18311 Streptococcus thermophilus LMD-9 Streptococcus thermophilus ND03 Streptococcus thermophilus JIM 8232 Streptococcus thermophilus MN-ZLW-002 Streptococcus sanguinis Streptococcus suis 05ZYH33 Streptococcus suis 98HAH33 Streptococcus suis BM407 Streptococcus suis P1/7 Streptococcus suis SC84 Streptococcus suis ST3 Streptococcus suis A7 Streptococcus suis D12 Streptococcus suis D9 Streptococcus suis GZ1 Streptococcus suis JS14 Streptococcus suis SS12 Streptococcus suis ST1 Streptococcus suis S735 Streptococcus suis SC070731 Streptococcus gordonii Streptococcus equi subsp. zooepidemicus H70 Streptococcus equi subsp. zooepidemicus MGCS10565 Streptococcus equi subsp. zooepidemicus ATCC 35246 Streptococcus equi subsp. equi 4047 Streptococcus uberis Streptococcus dysgalactiae subsp. equisimilis GGS_124 Streptococcus dysgalactiae subsp. equisimilis ATCC 12394 Streptococcus dysgalactiae subsp. equisimilis RE378 Streptococcus dysgalactiae subsp. equisimilis AC-2713 Streptococcus gallolyticus UCN34 Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069 Streptococcus gallolyticus subsp. gallolyticus ATCC 43143 Streptococcus mitis B6 Streptococcus oralis Streptococcus parauberis Streptococcus pasteurianus Streptococcus parasanguinis ATCC 15912 Streptococcus parasanguinis FW213 Streptococcus salivarius CCHSS3 Streptococcus salivarius 57.I Streptococcus salivarius JIM8777 Streptococcus pseudopneumoniae Streptococcus macedonicus Streptococcus infantarius Streptococcus intermedius Lactobacillus plantarum WCFS1 Lactobacillus plantarum JDM1 Lactobacillus plantarum ZJ316 Lactobacillus plantarum subsp. plantarum ST-III Lactobacillus johnsonii NCC 533 Lactobacillus johnsonii FI9785 Lactobacillus johnsonii DPC 6026 Lactobacillus acidophilus NCFM Lactobacillus acidophilus 30SC Lactobacillus sakei Lactobacillus salivarius UCC118 Lactobacillus salivarius CECT 5713 Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Lactobacillus delbrueckii subsp. bulgaricus ND02 Lactobacillus delbrueckii subsp. bulgaricus 2038 Lactobacillus brevis ATCC 367 Lactobacillus brevis KB290 Lactobacillus casei ATCC 334 Lactobacillus casei BL23 Lactobacillus casei Zhang Lactobacillus casei BD-II Lactobacillus casei LC2W Lactobacillus casei W56 Lactobacillus gasseri Lactobacillus reuteri DSM 20016 Lactobacillus reuteri JCM 1112 Lactobacillus reuteri SD2112 Lactobacillus helveticus DPC 4571 Lactobacillus helveticus H10 Lactobacillus helveticus R0052 Lactobacillus fermentum IFO 3956 Lactobacillus fermentum CECT 5716 Lactobacillus rhamnosus GG Lactobacillus rhamnosus GG Lactobacillus rhamnosus Lc 705 Lactobacillus rhamnosus ATCC 8530 Lactobacillus crispatus Lactobacillus amylovorus GRL 1112 Lactobacillus amylovorus GRL1118 Lactobacillus buchneri NRRL B-30929 Lactobacillus buchneri CD034 Lactobacillus kefiranofaciens Lactobacillus ruminis Lactobacillus sanfranciscensis Pediococcus pentosaceus Pediococcus claussenii Enterococcus faecalis V583 Enterococcus faecalis 62 Enterococcus faecalis OG1RF Enterococcus faecalis D32 Enterococcus faecalis Symbioflor 1 Enterococcus faecium Aus0004 Enterococcus faecium DO Enterococcus faecium NRRL B-2354 Enterococcus hirae Enterococcus sp. 7L76 Melissococcus plutonius ATCC 35311 Melissococcus plutonius DAT561 Tetragenococcus halophilus Oenococcus oeni Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Leuconostoc mesenteroides subsp. mesenteroides J18 Leuconostoc citreum Leuconostoc kimchii Leuconostoc gasicomitatum Leuconostoc sp. C2 Leuconostoc carnosum Leuconostoc gelidum Aerococcus urinae Carnobacterium sp. 17-4 Carnobacterium maltaromaticum Weissella koreensis Clostridium acetobutylicum ATCC 824 Clostridium acetobutylicum DSM 1731 Clostridium acetobutylicum EA 2018 Clostridium perfringens 13 Clostridium perfringens ATCC 13124 Clostridium perfringens SM101 Clostridium tetani E88 Clostridium novyi Clostridium thermocellum ATCC 27405 Clostridium thermocellum DSM 1313 Clostridium botulinum A ATCC 3502 Clostridium botulinum A ATCC 19397 Clostridium botulinum A Hall Clostridium botulinum A2 Clostridium botulinum A3 Loch Maree Clostridium botulinum B Eklund 17B Clostridium botulinum B1 Okra Clostridium botulinum Ba4 Clostridium botulinum BKT015925 Clostridium botulinum E3 Clostridium botulinum F Langeland Clostridium botulinum F 230613 Clostridium botulinum H04402 065 Clostridium beijerinckii Clostridium kluyveri DSM 555 Clostridium kluyveri NBRC 12016 Clostridium phytofermentans Clostridium cellulolyticum Clostridium ljungdahlii Clostridium saccharolyticum WM1 Clostridium cf. saccharolyticum K10 Clostridium cellulovorans Clostridium sp. SY8519 Clostridium sp. BNL1100 Clostridium clariflavum DSM 19732 Clostridium acidurici Clostridium saccharoperbutylacetonicum Clostridium stercorarium subsp. stercorarium DSM 8532 Clostridium stercorarium subsp. stercorarium DSM 8532 Clostridium difficile 630 Clostridium difficile CD196 Clostridium difficile R20291 Clostridium difficile BI1 Clostridium sticklandii Filifactor alocis Alkaliphilus metalliredigens Alkaliphilus oremlandii Candidatus Arthromitus sp. SFB-mouse-Japan Candidatus Arthromitus sp. SFB-mouse-Yit Candidatus Arthromitus sp. SFB-rat-Yit Symbiobacterium thermophilum Syntrophomonas wolfei Syntrophothermus lipocalidus Desulfitobacterium hafniense Y51 Desulfitobacterium hafniense DCB-2 Desulfitobacterium dehalogenans Desulfitobacterium dichloroeliminans Desulfotomaculum reducens Desulfotomaculum acetoxidans Desulfotomaculum carboxydivorans Desulfotomaculum kuznetsovii Desulfotomaculum ruminis Pelotomaculum thermopropionicum Candidatus Desulforudis audaxviator Thermincola potens JR Syntrophobotulus glycolicus Desulfosporosinus orientis Desulfosporosinus acidiphilus Desulfosporosinus meridiei Dehalobacter sp. DCA Dehalobacter sp. CF Heliobacterium modesticaldum Finegoldia magna Anaerococcus prevotii Eubacterium eligens Eubacterium rectale ATCC 33656 Eubacterium rectale DSM 17629 Eubacterium rectale M104/1 Eubacterium limosum Eubacterium siraeum V10Sc8a Eubacterium siraeum 70/3 Acetobacterium woodii Butyrivibrio proteoclasticus Butyrivibrio fibrisolvens Clostridium lentocellum Roseburia hominis Roseburia intestinalis XB6B4 Roseburia intestinalis M50/1 Coprococcus sp. ART55/1 Coprococcus catus Ethanoligenens harbinense Ruminococcus albus Ruminococcus bromii Ruminococcus champanellensis Ruminococcus sp. SR1/5 Ruminococcus obeum A2-162 Ruminococcus torques L2-14 Faecalibacterium prausnitzii L2-6 Faecalibacterium prausnitzii SL3/3 Oscillibacter valericigenes Thermaerobacter marianensis Sulfobacillus acidophilus TPY Sulfobacillus acidophilus DSM 10332 Clostridiales genomosp. BVAB3 Butyrate-producing bacterium SM4/1 Butyrate-producing bacterium SS3/4 Butyrate-producing bacterium SSC/2 Thermoanaerobacter tengcongensis Thermoanaerobacter sp. X514 Thermoanaerobacter sp. X513 Thermoanaerobacter pseudethanolicus Thermoanaerobacter italicus Thermoanaerobacter mathranii Thermoanaerobacter brockii Thermoanaerobacter wiegelii Carboxydothermus hydrogenoformans Tepidanaerobacter sp. Re1 Tepidanaerobacter acetatoxydans Re1 Moorella thermoacetica Ammonifex degensii Thermacetogenium phaeum Caldicellulosiruptor saccharolyticus Caldicellulosiruptor bescii Caldicellulosiruptor obsidiansis Caldicellulosiruptor hydrothermalis Caldicellulosiruptor owensensis Caldicellulosiruptor kristjanssonii Caldicellulosiruptor kronotskyensis Caldicellulosiruptor lactoaceticus Thermosediminibacter oceani Thermoanaerobacterium thermosaccharolyticum DSM 571 Thermoanaerobacterium thermosaccharolyticum M0795 Thermoanaerobacterium xylanolyticum Thermoanaerobacterium saccharolyticum Coprothermobacter proteolyticus Thermodesulfobium narugense Mahella australiensis Natranaerobius thermophilus Halothermothrix orenii Halanaerobium hydrogeniformans Halanaerobium praevalens Acetohalobium arabaticum Halobacteroides halobius Veillonella parvula Selenomonas sputigena Selenomonas ruminantium Megasphaera elsdenii Megamonas hypermegale Acidaminococcus fermentans Acidaminococcus intestini Erysipelothrix rhusiopathiae Eubacterium cylindroides Mycoplasma genitalium G37 Mycoplasma genitalium M2288 Mycoplasma genitalium M2321 Mycoplasma genitalium M6282 Mycoplasma genitalium M6320 Mycoplasma pneumoniae M129 Mycoplasma pneumoniae 309 Mycoplasma pneumoniae FH Mycoplasma pneumoniae M129-B7 Mycoplasma pulmonis Mycoplasma penetrans Mycoplasma gallisepticum R(low) Mycoplasma gallisepticum R(high) Mycoplasma gallisepticum F Mycoplasma gallisepticum NC06_2006.080-5-2P Mycoplasma gallisepticum NC95_13295-2-2P Mycoplasma gallisepticum NY01_2001.047-5-1P Mycoplasma gallisepticum VA94_7994-1-7P Mycoplasma gallisepticum WI01_2001.043-13-2P Mycoplasma gallisepticum CA06_2006.052-5-2P Mycoplasma gallisepticum NC08_2008.031-4-3P Mycoplasma gallisepticum NC96_1596-4-2P Mycoplasma mycoides subsp. mycoides SC PG1 Mycoplasma mycoides subsp. mycoides SC Gladysdale Mycoplasma mycoides subsp. capri LC 95010 Mycoplasma mobile Mycoplasma hyopneumoniae 232 Mycoplasma hyopneumoniae J Mycoplasma hyopneumoniae 7448 Mycoplasma hyopneumoniae 168 Mycoplasma synoviae Mycoplasma capricolum Mycoplasma agalactiae PG2 Mycoplasma agalactiae 5632 Mycoplasma arthritidis Mycoplasma conjunctivae Mycoplasma hominis Mycoplasma crocodyli Mycoplasma hyorhinis HUB-1 Mycoplasma hyorhinis GDL-1 Mycoplasma hyorhinis MCLD Mycoplasma hyorhinis SK76 Mycoplasma fermentans JER Mycoplasma fermentans M64 Mycoplasma fermentans PG18 Mycoplasma bovis PG45 Mycoplasma bovis Hubei-1 Mycoplasma bovis HB0801 Mycoplasma leachii PG50 Mycoplasma leachii 99/014/6 Mycoplasma haemofelis Langford 1 Mycoplasma haemofelis Ohio2 Mycoplasma suis Illinois Mycoplasma suis KI3806 Mycoplasma putrefaciens KS1 Mycoplasma haemocanis Mycoplasma wenyonii Candidatus Mycoplasma haemolamae Mycoplasma cynos Candidatus Mycoplasma haemominutum Ureaplasma parvum serovar 3 ATCC 700970 Ureaplasma parvum serovar 3 ATCC 27815 Ureaplasma urealyticum serovar 10 ATCC 33699 Phytoplasma OY Phytoplasma AYWB Candidatus Phytoplasma mali Candidatus Phytoplasma australiense Acholeplasma laidlawii Mesoplasma florum Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis H37Rv Mycobacterium tuberculosis CDC1551 Mycobacterium tuberculosis H37Ra Mycobacterium tuberculosis F11 Mycobacterium tuberculosis KZN 1435 Mycobacterium tuberculosis KZN 4207 Mycobacterium tuberculosis KZN 605 Mycobacterium tuberculosis RGTB327 Mycobacterium tuberculosis RGTB423 Mycobacterium tuberculosis CCDC5079 Mycobacterium tuberculosis CCDC5180 Mycobacterium tuberculosis CTRI-2 Mycobacterium tuberculosis UT205 Mycobacterium tuberculosis Erdman = ATCC 35801 Mycobacterium tuberculosis Beijing/NITR203 Mycobacterium tuberculosis 7199-99 Mycobacterium bovis AF2122/97 Mycobacterium bovis BCG Pasteur 1173P2 Mycobacterium bovis BCG Tokyo 172 Mycobacterium bovis BCG Mexico Mycobacterium bovis BCG Korea 1168P Mycobacterium africanum Mycobacterium canettii CIPT 140010059 Mycobacterium canettii CIPT 140060008 Mycobacterium canettii CIPT 140070008 Mycobacterium canettii CIPT 140070010 Mycobacterium canettii CIPT 140070017 Mycobacterium leprae TN Mycobacterium leprae Br4923 Mycobacterium avium subsp. paratuberculosis K-10 Mycobacterium avium 104 Mycobacterium intracellulare MOTT-02 Mycobacterium intracellulare MOTT-64 Mycobacterium intracellulare ATCC 13950 Mycobacterium indicus pranii Mycobacterium smegmatis MC2 155 Mycobacterium smegmatis MC2 155 Mycobacterium smegmatis JS623 Mycobacterium ulcerans Mycobacterium vanbaalenii Mycobacterium gilvum PYR-GCK Mycobacterium gilvum Spyr1 Mycobacterium abscessus ATCC 19977 Mycobacterium massiliense Mycobacterium sp. MCS Mycobacterium sp. KMS Mycobacterium sp. JLS Mycobacterium sp. JDM601 Mycobacterium marinum M Mycobacterium rhodesiae Mycobacterium sp. MOTT36Y Mycobacterium chubuense Mycobacterium liflandii Amycolicicoccus subflavus Corynebacterium glutamicum ATCC 13032 (Kyowa Hakko) Corynebacterium glutamicum ATCC 13032 (Bielefeld) Corynebacterium glutamicum K051 Corynebacterium glutamicum R Corynebacterium efficiens Corynebacterium diphtheriae NCTC 13129 Corynebacterium diphtheriae 241 Corynebacterium diphtheriae INCA 402 Corynebacterium diphtheriae HC01 Corynebacterium diphtheriae HC02 Corynebacterium diphtheriae HC03 Corynebacterium diphtheriae HC04 Corynebacterium diphtheriae 31A Corynebacterium diphtheriae BH8 Corynebacterium diphtheriae C7 Corynebacterium diphtheriae CDCE 8392 Corynebacterium diphtheriae PW8 Corynebacterium diphtheriae VA01 Corynebacterium jeikeium Corynebacterium urealyticum DSM 7109 Corynebacterium urealyticum DSM 7111 Corynebacterium aurimucosum Corynebacterium kroppenstedtii Corynebacterium pseudotuberculosis FRC41 Corynebacterium pseudotuberculosis 3/99-5 Corynebacterium pseudotuberculosis 316 Corynebacterium pseudotuberculosis P54B96 Corynebacterium pseudotuberculosis 1002 Corynebacterium pseudotuberculosis C231 Corynebacterium pseudotuberculosis I19 Corynebacterium pseudotuberculosis PAT10 Corynebacterium pseudotuberculosis 267 Corynebacterium pseudotuberculosis 31 Corynebacterium pseudotuberculosis 1/06-A Corynebacterium pseudotuberculosis 42/02-A Corynebacterium pseudotuberculosis CIP 52.97 Corynebacterium pseudotuberculosis 258 Corynebacterium pseudotuberculosis Cp162 Corynebacterium resistens Corynebacterium ulcerans BR-AD22 Corynebacterium ulcerans 809 Corynebacterium ulcerans 0102 Corynebacterium variabile Corynebacterium halotolerans Corynebacterium callunae Nocardia farcinica Nocardia cyriacigeorgica Nocardia brasiliensis Rhodococcus jostii RHA1 Rhodococcus erythropolis Rhodococcus opacus Rhodococcus equi Gordonia bronchialis Gordonia polyisoprenivorans Gordonia sp. KTR9 Tsukamurella paurometabola Segniliparus rotundus Streptomyces coelicolor Streptomyces avermitilis Streptomyces griseus Streptomyces scabiei Streptomyces sp. SirexAA-E Streptomyces violaceusniger Streptomyces cattleya NRRL 8057 Streptomyces cattleya NRRL 8057 = DSM 46488 Streptomyces flavogriseus Streptomyces bingchenggensis Streptomyces hygroscopicus subsp. jinggangensis 5008 Streptomyces hygroscopicus subsp. jinggangensis TL01 Streptomyces venezuelae Streptomyces davawensis Streptomyces albus Streptomyces sp. PAMC26508 Kitasatospora setae Tropheryma whipplei Twist Tropheryma whipplei TW08/27 Leifsonia xyli xyli CTCB07 Clavibacter michiganensis subsp. michiganensis Clavibacter michiganensis subsp. sepedonicus Clavibacter michiganensis subsp. nebraskensis Microbacterium testaceum Arthrobacter sp. FB24 Arthrobacter aurescens Arthrobacter chlorophenolicus Arthrobacter arilaitensis Arthrobacter phenanthrenivorans Arthrobacter sp. Rue61a Renibacterium salmoninarum Kocuria rhizophila Micrococcus luteus Rothia mucilaginosa Rothia dentocariosa Beutenbergia cavernae Brachybacterium faecium Jonesia denitrificans Kytococcus sedentarius Xylanimonas cellulosilytica Isoptericola variabilis Sanguibacter keddieii Cellulomonas flavigena Cellulomonas fimi Cellvibrio gilvus Intrasporangium calvum Propionibacterium acnes KPA171202 Propionibacterium acnes SK137 Propionibacterium acnes TypeIA2 P.acn17 Propionibacterium acnes TypeIA2 P.acn31 Propionibacterium acnes TypeIA2 P.acn33 Propionibacterium acnes 266 Propionibacterium acnes ATCC 11828 Propionibacterium acnes 6609 Propionibacterium acnes C1 Propionibacterium freudenreichii Propionibacterium propionicum Propionibacterium acidipropionici Microlunatus phosphovorus Nocardioides sp. JS614 Kribbella flavida Thermobifida fusca Nocardiopsis dassonvillei Nocardiopsis alba Thermomonospora curvata Streptosporangium roseum Frankia sp. CcI3 Frankia sp. EAN1pec Frankia sp. EuI1c Frankia alni Frankia symbiont Acidothermus cellulolyticus Nakamurella multipartita Geodermatophilus obscurus Blastococcus saxobsidens Modestobacter marinus Kineococcus radiotolerans Saccharopolyspora erythraea Saccharomonospora viridis Thermobispora bispora Amycolatopsis mediterranei U32 Amycolatopsis mediterranei S699 Amycolatopsis mediterranei S699 Pseudonocardia dioxanivorans Actinosynnema mirum Saccharothrix espanaensis Salinispora tropica Salinispora arenicola Micromonospora aurantiaca Micromonospora sp. L5 Verrucosispora maris Actinoplanes missouriensis Actinoplanes sp. SE50/110 Catenulispora acidiphila Stackebrandtia nassauensis Arcanobacterium haemolyticum Mobiluncus curtisii Bifidobacterium longum NCC2705 Bifidobacterium longum DJO10A Bifidobacterium longum subsp. infantis ATCC 15697 (JGI) Bifidobacterium longum subsp. infantis ATCC 15697 (Tokyo) Bifidobacterium longum subsp. infantis 157F Bifidobacterium longum subsp. longum JDM301 Bifidobacterium longum subsp. longum BBMN68 Bifidobacterium longum subsp. longum JCM 1217 Bifidobacterium longum subsp. longum KACC 91563 Bifidobacterium longum subsp. longum F8 Bifidobacterium adolescentis Bifidobacterium animalis subsp. lactis AD011 Bifidobacterium animalis subsp. lactis Bl-04 Bifidobacterium animalis subsp. lactis DSM 10140 Bifidobacterium animalis subsp. lactis BB-12 Bifidobacterium animalis subsp. lactis BLC1 Bifidobacterium animalis subsp. lactis CNCM I-2494 Bifidobacterium animalis subsp. lactis V9 Bifidobacterium animalis subsp. lactis B420 Bifidobacterium animalis subsp. lactis Bi-07 Bifidobacterium animalis subsp. animalis ATCC 25527 Bifidobacterium dentium Bifidobacterium bifidum S17 Bifidobacterium bifidum PRL2010 Bifidobacterium bifidum BGN4 Bifidobacterium breve ACS-071-V-Sch8b Bifidobacterium breve UCC2003 Bifidobacterium asteroides Bifidobacterium thermophilum Gardnerella vaginalis 409-05 Gardnerella vaginalis ATCC 14019 Gardnerella vaginalis HMP9231 Rubrobacter xylanophilus Conexibacter woesei Acidimicrobium ferrooxidans DSM 10331 Acidimicrobidae bacterium Cryptobacterium curtum Slackia heliotrinireducens Atopobium parvulum Eggerthella lenta Eggerthella sp. YY7918 Olsenella uli Coriobacterium glomerans Gordonibacter pamelaeae Chlamydia trachomatis D/UW-3/CX Chlamydia trachomatis D-EC Chlamydia trachomatis D-LC Chlamydia trachomatis D/SotonD1 Chlamydia trachomatis D/SotonD5 Chlamydia trachomatis D/SotonD6 Chlamydia trachomatis A/HAR-13 Chlamydia trachomatis A2497 Chlamydia trachomatis A2497 Chlamydia trachomatis A/363 Chlamydia trachomatis A/5291 Chlamydia trachomatis A/7249 Chlamydia trachomatis L1/1322/p2 Chlamydia trachomatis L1/115 Chlamydia trachomatis L1/224 Chlamydia trachomatis L1/440/LN Chlamydia trachomatis L2/434/Bu Chlamydia trachomatis L2/25667R Chlamydia trachomatis L2b/UCH-1/proctitis Chlamydia trachomatis L2b/UCH-2 Chlamydia trachomatis L2b/LST Chlamydia trachomatis L2b/CV204 Chlamydia trachomatis L2b/Ams1 Chlamydia trachomatis L2b/Ams2 Chlamydia trachomatis L2b/Ams3 Chlamydia trachomatis L2b/Ams4 Chlamydia trachomatis L2b/Ams5 Chlamydia trachomatis L2b/Canada1 Chlamydia trachomatis L2b/Canada2 Chlamydia trachomatis L2b/795 Chlamydia trachomatis L2b/8200/07 Chlamydia trachomatis L2c Chlamydia trachomatis L3/404/LN Chlamydia trachomatis B/Jali20/OT Chlamydia trachomatis B/TZ1A828/OT Chlamydia trachomatis E/11023 Chlamydia trachomatis E/150 Chlamydia trachomatis Sweden2 Chlamydia trachomatis E/SW3 Chlamydia trachomatis E/Bour Chlamydia trachomatis E/SotonE4 Chlamydia trachomatis E/SotonE8 Chlamydia trachomatis F/SW4 Chlamydia trachomatis F/SW5 Chlamydia trachomatis F/SotonF3 Chlamydia trachomatis G/11074 Chlamydia trachomatis G/11222 Chlamydia trachomatis G/9301 Chlamydia trachomatis G/9768 Chlamydia trachomatis G/SotonG1 Chlamydia trachomatis IU824 Chlamydia trachomatis IU888 Chlamydia trachomatis Ia/SotonIa1 Chlamydia trachomatis Ia/SotonIa3 Chlamydia trachomatis K/SotonK1 Chlamydia muridarum Chlamydia pneumoniae CWL029 Chlamydia pneumoniae AR39 Chlamydia pneumoniae J138 Chlamydia pneumoniae TW183 Chlamydia pneumoniae LPCoLN Chlamydia pecorum Chlamydia psittaci 6BC Chlamydia psittaci 6BC Chlamydia psittaci 01DC11 Chlamydia psittaci 02DC15 Chlamydia psittaci 08DC60 Chlamydia psittaci C19/98 Chlamydia psittaci RD1 Chlamydia psittaci CP3 Chlamydia psittaci NJ1 Chlamydia psittaci 84/55 Chlamydia psittaci GR9 Chlamydia psittaci M56 Chlamydia psittaci MN Chlamydia psittaci VS225 Chlamydia psittaci WC Chlamydia psittaci WS/RT/E30 Chlamydia psittaci 01DC12 Chlamydophila psittaci Mat116 Chlamydophila caviae Chlamydophila abortus Chlamydophila felis Candidatus Protochlamydia amoebophila Parachlamydia acanthamoebae Waddlia chondrophila Simkania negevensis Borrelia burgdorferi B31 Borrelia burgdorferi ZS7 Borrelia burgdorferi N40 Borrelia burgdorferi JD1 Borrelia garinii PBi Borrelia garinii BgVir Borrelia garinii NMJW1 Borrelia afzelii (FLI) Borrelia afzelii (Maryland) Borrelia afzelii HLJ01 Borrelia bissettii Borrelia turicatae Borrelia hermsii Borrelia duttonii Borrelia recurrentis Borrelia crocidurae Treponema pallidum subsp. pallidum Nichols Treponema pallidum subsp. pallidum SS14 Treponema pallidum subsp. pallidum DAL-1 Treponema pallidum subsp. pallidum Chicago Treponema pallidum subsp. pallidum Mexico A Treponema pallidum subsp. pertenue CDC2 Treponema pallidum subsp. pertenue Gauthier Treponema pallidum subsp. pertenue SamoaD Treponema denticola Treponema succinifaciens Treponema brennaborense Treponema azotonutricium Treponema primitia Treponema paraluiscuniculi Spirochaeta smaragdinae Spirochaeta thermophila DSM 6192 Spirochaeta thermophila DSM 6578 Spirochaeta coccoides Spirochaeta caldaria DSM 7334 Spirochaeta africana Leptospira interrogans serovar Lai 56601 Leptospira interrogans serovar Lai IPAV Leptospira interrogans serovar Copenhageni Leptospira borgpetersenii JB197 Leptospira borgpetersenii L550 Leptospira biflexa serovar Patoc Patoc 1 (Paris) Leptospira biflexa serovar Patoc Patoc 1 (Ames) Turneriella parva Brachyspira hyodysenteriae Brachyspira murdochii Brachyspira pilosicoli 95/1000 Brachyspira pilosicoli B2904 Brachyspira pilosicoli P43/6/78 Brachyspira pilosicoli WesB Brachyspira intermedia Spirochaeta sp. Buddy Sphaerochaeta pleomorpha Grapes Candidatus Koribacter versatilis Acidobacterium capsulatum Granulicella tundricola Granulicella mallensis Terriglobus saanensis Terriglobus roseus Candidatus Solibacter usitatus Candidatus Chloracidobacterium thermophilum B Bacteroides thetaiotaomicron Bacteroides fragilis YCH46 Bacteroides fragilis NCTC9343 Bacteroides fragilis 638R Bacteroides vulgatus Bacteroides helcogenes Bacteroides salanitronis Bacteroides xylanisolvens Porphyromonas gingivalis W83 Porphyromonas gingivalis ATCC 33277 Porphyromonas gingivalis TDC60 Porphyromonas asaccharolytica Parabacteroides distasonis Paludibacter propionicigenes Odoribacter splanchnicus Tannerella forsythia Candidatus Azobacteroides pseudotrichonymphae Prevotella ruminicola Prevotella melaninogenica Prevotella denticola Prevotella intermedia Prevotella dentalis Alistipes finegoldii Alistipes shahii Salinibacter ruber DSM 13855 Salinibacter ruber M8 Rhodothermus marinus DSM 4252 Rhodothermus marinus SG0.5JP17-172 Chitinophaga pinensis Niastella koreensis Pedobacter heparinus Pedobacter saltans Sphingobacterium sp. 21 Solitalea canadensis Haliscomenobacter hydrossis Saprospira grandis Cyclobacterium marinum Belliella baltica Echinicola vietnamensis Cytophaga hutchinsonii Dyadobacter fermentans Spirosoma linguale Leadbetterella byssophila Runella slithyformis Flexibacter litoralis Emticicia oligotrophica Fibrella aestuarina Marivirga tractuosa Gramella forsetii Flavobacterium johnsoniae Flavobacterium psychrophilum Flavobacterium branchiophilum Flavobacterium columnare Flavobacterium indicum Capnocytophaga ochracea Capnocytophaga canimorsus Robiginitalea biformata Zunongwangia profunda Croceibacter atlanticus Riemerella anatipestifer ATCC 11845 = DSM 15868 Riemerella anatipestifer ATCC 11845 = DSM 15868 Riemerella anatipestifer RA-GD Riemerella anatipestifer RA-CH-1 Riemerella anatipestifer RA-CH-2 Maribacter sp. HTCC2170 Cellulophaga algicola Cellulophaga lytica Weeksella virosa Krokinobacter sp. 4H-3-7-5 Lacinutrix sp. 5H-3-7-4 Zobellia galactanivorans Muricauda ruestringensis Aequorivita sublithincola Ornithobacterium rhinotracheale Psychroflexus torquis Nonlabens dokdonensis Polaribacter sp. MED152 Flavobacteriaceae bacterium Candidatus Sulcia muelleri GWSS Candidatus Sulcia muelleri SMDSEM Candidatus Sulcia muelleri DMIN Candidatus Sulcia muelleri CARI Blattabacterium sp. (Blattella germanica) Blattabacterium sp. (Periplaneta americana) Blattabacterium sp. (Mastotermes darwiniensis) Blattabacterium sp. (Cryptocercus punctulatus) Blattabacterium sp. (Blaberus giganteus) Blattabacterium sp. (Blatta orientalis) Blattabacterium sp. (Panesthia angustipennis spadica) Fluviicola taffensis Owenweeksia hongkongensis Candidatus Uzinura diaspidicola Candidatus Amoebophilus asiaticus Cardinium endosymbiont cEper1 of Encarsia pergandiella Fibrobacter succinogenes Fibrobacter succinogenes Fusobacterium nucleatum subsp. nucleatum ATCC 25586 Leptotrichia buccalis Sebaldella termitidis Streptobacillus moniliformis Ilyobacter polytropus Opitutus terrae Coraliomargarita akajimensis Methylacidiphilum infernorum Akkermansia muciniphila Gemmatimonas aurantiaca Rhodopirellula baltica Pirellula staleyi Planctomyces limnophilus Planctomyces brasiliensis Isosphaera pallida Singulisphaera acidiphila Phycisphaera mikurensis Elusimicrobium minutum Uncultured Termite group 1 bacterium phylotype Rs-D17 Thermanaerovibrio acidaminovorans Aminobacterium colombiense Thermovirga lienii Anaerobaculum mobile Synergistetes bacterium Synechocystis sp. PCC 6803 Synechocystis sp. PCC 6803 Synechocystis sp. PCC 6803 GT-S Synechocystis sp. PCC 6803 GT-I Synechocystis sp. PCC 6803 PCC-N Synechocystis sp. PCC 6803 PCC-P Synechococcus sp. WH8102 Synechococcus elongatus PCC6301 Synechococcus elongatus PCC7942 Synechococcus sp. CC9605 Synechococcus sp. CC9902 Synechococcus sp. CC9311 Synechococcus sp. RCC307 Synechococcus sp. WH7803 Synechococcus sp. PCC7002 Synechococcus sp. JA-3-3Ab Synechococcus sp. JA-2-3B'a(2-13) Synechococcus sp. PCC 6312 Synechococcus sp. PCC 7502 Thermosynechococcus elongatus Microcystis aeruginosa Cyanothece sp. ATCC 51142 Cyanothece sp. PCC 8801 Cyanothece sp. PCC 7424 Cyanothece sp. PCC 7425 Cyanothece sp. PCC 8802 Cyanothece sp. PCC 7822 Acaryochloris marina Cyanobium gracile Cyanobacterium aponinum Cyanobacterium stanieri Dactylococcopsis salina Halothece sp. PCC 7418 Gloeocapsa sp. PCC 7428 Chamaesiphon minutus Cyanobacterium UCYN-A Gloeobacter violaceus Anabaena sp. PCC7120 Nostoc punctiforme Nostoc sp. PCC 7107 Nostoc sp. PCC 7524 Anabaena variabilis Anabaena sp. 90 Anabaena cylindrica Anabaena azollae 0708 Cylindrospermum stagnale Calothrix sp. PCC 7507 Calothrix sp. PCC 6303 Rivularia sp. PCC 7116 Prochlorococcus marinus SS120 Prochlorococcus marinus MED4 Prochlorococcus marinus MIT 9313 Prochlorococcus marinus NATL2A Prochlorococcus marinus MIT9312 Prochlorococcus marinus AS9601 Prochlorococcus marinus MIT 9515 Prochlorococcus marinus MIT 9303 Prochlorococcus marinus MIT 9301 Prochlorococcus marinus MIT 9215 Prochlorococcus marinus MIT 9211 Prochlorococcus marinus NATL1A Trichodesmium erythraeum Leptolyngbya sp. PCC 7376 Geitlerinema sp. PCC 7407 Oscillatoria acuminata Oscillatoria nigro-viridis Pseudanabaena sp. PCC 7367 Crinalium epipsammum Microcoleus sp. PCC 7113 Arthrospira platensis Chroococcidiopsis thermalis Pleurocapsa sp. PCC 7327 Stanieria cyanosphaera Chlorobaculum tepidum Chlorobaculum parvum NCIB 8327 Chlorobium chlorochromatii Chlorobium phaeobacteroides DSM 266 Chlorobium phaeobacteroides BS1 Chlorobium limicola Chlorobium phaeovibrioides Pelodictyon luteolum Pelodictyon phaeoclathratiforme Prosthecochloris aestuarii Chloroherpeton thalassium Ignavibacterium album Dehalococcoides ethenogenes Dehalococcoides sp. CBDB1 Dehalococcoides sp. BAV1 Dehalococcoides sp. VS Dehalococcoides sp. GT Dehalococcoides mccartyi BTF08 Dehalococcoides mccartyi DCMB5 Dehalogenimonas lykanthroporepellens Roseiflexus sp. RS-1 Roseiflexus castenholzii DSM13941 Chloroflexus aurantiacus Chloroflexus aggregans Chloroflexus sp. Y-400-fl Herpetosiphon aurantiacus Thermomicrobium roseum Sphaerobacter thermophilus Anaerolinea thermophila Caldilinea aerophila Deinococcus radiodurans Deinococcus geothermalis Deinococcus deserti Deinococcus maricopensis Deinococcus proteolyticus Deinococcus gobiensis Deinococcus peraridilitoris Truepera radiovictrix Thermus thermophilus HB27 Thermus thermophilus HB8 Thermus thermophilus SG0.5JP17-16 Thermus thermophilus JL-18 Thermus scotoductus Thermus sp. CCB_US3_UF1 Thermus oshimai Meiothermus ruber DSM 1279 Meiothermus silvanus Oceanithermus profundus Marinithermus hydrothermalis Aquifex aeolicus Hydrogenobaculum sp. Y04AAS1 Hydrogenobaculum sp. HO Hydrogenobaculum sp. SN Hydrogenobacter thermophilus Hydrogenobacter thermophilus Thermocrinis albus Sulfurihydrogenibium sp. YO3AOP1 Sulfurihydrogenibium azorense Persephonella marina Thermovibrio ammonificans Desulfurobacterium thermolithotrophum Thermotoga maritima Thermotoga petrophila Thermotoga lettingae Thermotoga sp. RQ2 Thermotoga neapolitana Thermotoga naphthophila Thermotoga thermarum Thermosipho melanesiensis Thermosipho africanus Fervidobacterium nodosum Fervidobacterium pennivorans Petrotoga mobilis Kosmotoga olearia Marinitoga piezophila Mesotoga prima Dictyoglomus thermophilum Dictyoglomus turgidum Thermodesulfovibrio yellowstonii Candidatus Nitrospira defluvii Leptospirillum ferrooxidans Leptospirillum ferriphilum Thermobaculum terrenum Deferribacter desulfuricans SSM1 Denitrovibrio acetiphilus Calditerrivibrio nitroreducens Flexistipes sinusarabici Thermodesulfatator indicus Thermodesulfobacterium sp. OPB45 Caldisericum exile Candidatus Methylomirabilis oxyfera Methanocaldococcus jannaschii Methanocaldococcus fervens Methanocaldococcus vulcanius Methanocaldococcus sp. FS406-22 Methanocaldococcus infernus Methanotorris igneus Methanococcus maripaludis S2 Methanococcus maripaludis C5 Methanococcus maripaludis C6 Methanococcus maripaludis C7 Methanococcus maripaludis X1 Methanococcus aeolicus Methanococcus vannielii Methanococcus voltae Methanothermococcus okinawensis Methanosarcina acetivorans Methanosarcina barkeri Methanosarcina mazei Go1 Methanosarcina mazei Tuc01 Methanococcoides burtonii Methanohalophilus mahii Methanohalobium evestigatum Methanosalsum zhilinae Methanolobus psychrophilus Methanomethylovorans hollandica Methanosaeta thermophila Methanosaeta concilii Methanosaeta harundinacea Methanospirillum hungatei Methanocorpusculum labreanum Methanoculleus marisnigri Methanoculleus bourgensis Methanoplanus petrolearius Methanoregula boonei Methanoregula formicicum Candidatus Methanosphaerula palustris Methanocella paludicola Methanocella conradii HZ254 Methanocella arvoryzae Methanothermobacter thermautotrophicus Methanothermobacter marburgensis Methanosphaera stadtmanae Methanobrevibacter smithii ATCC 35061 Methanobrevibacter ruminantium Methanobacterium sp. AL-21 Methanobacterium sp. SWAN-1 Methanothermus fervidus Methanopyrus kandleri Archaeoglobus fulgidus Archaeoglobus profundus Archaeoglobus veneficus Ferroglobus placidus Halobacterium sp. NRC-1 Halobacterium salinarum R1 Haloarcula marismortui Haloarcula hispanica Haloquadratum walsbyi DSM 16790 Haloquadratum walsbyi C23 Natronomonas pharaonis Natronomonas moolapensis Halorubrum lacusprofundi Halorhabdus utahensis Halomicrobium mukohataei Haloterrigena turkmenica Natrialba magadii Haloferax volcanii Haloferax mediterranei Halalkalicoccus jeotgali Halogeometricum borinquense Halopiger xanaduensis Natrinema sp. J7-2 Natrinema pellirubrum Natronobacterium gregoryi Halovivax ruber Natronococcus occultus Thermoplasma acidophilum Thermoplasma volcanium Picrophilus torridus Thermoplasmatales archaeon BRNA1 Pyrococcus horikoshii Pyrococcus abyssi Pyrococcus furiosus DSM 3638 Pyrococcus furiosus COM1 Pyrococcus sp. NA2 Pyrococcus yayanosii Pyrococcus sp. ST04 Thermococcus kodakaraensis Thermococcus onnurineus Thermococcus gammatolerans Thermococcus sibiricus Thermococcus barophilus Thermococcus sp. 4557 Thermococcus sp. AM4 Thermococcus sp. CL1 Aciduliprofundum boonei Aciduliprofundum sp. MAR08-339 Aeropyrum pernix Staphylothermus marinus Staphylothermus hellenicus Ignicoccus hospitalis Desulfurococcus kamchatkensis Desulfurococcus mucosus Desulfurococcus fermentans Thermosphaera aggregans Ignisphaera aggregans Thermogladius cellulolyticus 1633 Hyperthermus butylicus Pyrolobus fumarii Sulfolobus solfataricus P2 Sulfolobus solfataricus 98/2 Sulfolobus tokodaii Sulfolobus acidocaldarius DSM 639 Sulfolobus acidocaldarius N8 Sulfolobus acidocaldarius Ron12/I Sulfolobus islandicus L.S.2.15 Sulfolobus islandicus M.14.25 Sulfolobus islandicus M.16.27 Sulfolobus islandicus M.16.4 Sulfolobus islandicus Y.G.57.14 Sulfolobus islandicus Y.N.15.51 Sulfolobus islandicus L.D.8.5 Sulfolobus islandicus HVE10/4 Sulfolobus islandicus REY15A Sulfolobus islandicus LAL14/1 Metallosphaera sedula Metallosphaera cuprina Acidianus hospitalis Pyrobaculum aerophilum Pyrobaculum islandicum Pyrobaculum calidifontis Pyrobaculum arsenaticum Pyrobaculum sp. 1860 Pyrobaculum oguniense Caldivirga maquilingensis Thermoproteus neutrophilus Thermoproteus uzoniensis Thermoproteus tenax Vulcanisaeta distributa Vulcanisaeta moutnovskia Thermofilum pendens Acidilobus saccharovorans Caldisphaera lagunensis Fervidicoccus fontis Nitrosopumilus maritimus Candidatus Nitrosopumilus sp. AR2 Candidatus Nitrosopumilus koreensis Cenarchaeum symbiosum A Candidatus Nitrososphaera gargensis Nanoarchaeum equitans Candidatus Korarchaeum cryptofilum Halophilic archaeon

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