Polycyclic aromatic hydrocarbon degradation - Cupriavidus metallidurans
[
Pathway menu
|
Organism menu
|
Pathway entry
|
Download KGML
|
User data mapping
]
Reference pathway
Reference pathway (KO)
Reference pathway (EC)
Reference pathway (Reaction)
-----< Set personalized menu >-----
-----< Sort below by alphabet >-----
Escherichia coli O157:H7 EDL933 (EHEC)
Escherichia coli O157:H7 Sakai (EHEC)
Escherichia coli O157:H7 EC4115 (EHEC)
Escherichia coli O157:H7 TW14359 (EHEC)
Escherichia coli O55:H7 CB9615 (EPEC)
Salmonella enterica subsp. enterica serovar Typhi CT18
Salmonella enterica subsp. enterica serovar Typhi Ty2
Salmonella enterica subsp. enterica serovar Typhimurium LT2
Salmonella enterica subsp. enterica serovar Paratyphi A ATCC9150
Salmonella enterica subsp. enterica serovar Paratyphi A AKU12601
Salmonella enterica subsp. enterica serovar Paratyphi B
Salmonella enterica subsp. enterica serovar Paratyphi C
Salmonella enterica subsp. enterica serovar Choleraesuis
Salmonella enterica subsp. enterica serovar Heidelberg SL476
Salmonella enterica subsp. enterica serovar Newport
Salmonella enterica subsp. enterica serovar Schwarzengrund
Salmonella enterica subsp. enterica serovar Agona
Salmonella enterica subsp. enterica serovar Dublin
Salmonella enterica subsp. enterica serovar Gallinarum 287/91
Salmonella enterica subsp. enterica serovar Enteritidis
Salmonella bongori
Yersinia pseudotuberculosis IP32953 (serotype I)
Yersinia enterocolitica subsp. enterocolitica 8081
Erwinia billingiae
Sodalis glossinidius
Enterobacter sp. 638
Enterobacter cloacae subsp. cloacae ATCC 13047
Klebsiella pneumoniae subsp. pneumoniae HS11286
Klebsiella variicola
Klebsiella oxytoca KCTC 1686
Citrobacter koseri ATCC BAA-895
Citrobacter rodentium
Pantoea vagans
Pantoea sp. At-9b
Rahnella sp. Y9602
Rahnella aquatilis CIP 78.65 = ATCC 33071
Rahnella aquatilis HX2
Haemophilus somnus 129PT
Xanthomonas campestris pv. campestris ATCC 33913
Xanthomonas campestris pv. campestris 8004
Xanthomonas campestris pv. campestris B100
Xanthomonas campestris pv. vesicatoria
Xanthomonas campestris pv. raphani
Xanthomonas axonopodis pv. citri 306
Xanthomonas axonopodis pv. citrumelo F1
Xanthomonas axonopodis Xac29-1
Xanthomonas oryzae pv. oryzae KACC10331
Xanthomonas oryzae pv. oryzae MAFF311018
Xanthomonas oryzae pv. oryzae PXO99A
Xanthomonas oryzae pv. oryzicola
Xanthomonas albilineans
Xanthomonas citri
Frateuria aurantia
Vibrio sp. EJY3
Vibrio fischeri ES114
Pseudomonas aeruginosa PAO1
Pseudomonas aeruginosa UCBPP-PA14
Pseudomonas aeruginosa PA7
Pseudomonas aeruginosa LESB58
Pseudomonas aeruginosa DK2
Pseudomonas putida KT2440
Pseudomonas putida F1
Pseudomonas putida GB-1
Pseudomonas putida DOT-T1E
Pseudomonas syringae pv. phaseolicola 1448A
Pseudomonas protegens Pf-5
Pseudomonas fluorescens Pf0-1
Pseudomonas entomophila
Pseudomonas stutzeri CCUG 29243
Azotobacter vinelandii DJ
Azotobacter vinelandii CA
Azotobacter vinelandii CA6
Psychrobacter arcticus
Acinetobacter sp. ADP1
Acinetobacter oleivorans
Acinetobacter baumannii ATCC 17978
Acinetobacter baumannii SDF
Acinetobacter baumannii AYE
Acinetobacter baumannii ACICU
Acinetobacter baumannii AB0057
Acinetobacter baumannii AB307-0294
Shewanella sp. MR-4
Pseudoalteromonas atlantica
Marinobacter sp. BSs20148
Glaciecola sp. 4H-3-7+YE-5
Coxiella burnetii RSA 493
Legionella pneumophila subsp. pneumophila Philadelphia 1
Legionella pneumophila Lens
Legionella pneumophila Paris
Legionella pneumophila Corby
Legionella pneumophila 2300/99 Alcoy
Francisella tularensis subsp. tularensis SCHU S4
Francisella tularensis subsp. tularensis FSC 198
Francisella tularensis subsp. tularensis WY96-3418
Francisella tularensis subsp. holarctica LVS
Francisella tularensis subsp. holarctica OSU18
Francisella tularensis subsp. holarctica FTNF002-00
Francisella tularensis subsp. mediasiatica FSC147
Francisella novicida U112
Francisella philomiragia
Chromohalobacter salexigens
Alcanivorax borkumensis
Marinomonas sp. MWYL1
Marinomonas mediterranea
Oceanimonas sp. GK1
Neisseria meningitidis Z2491 (serogroup A)
Neisseria meningitidis MC58 (serogroup B)
Neisseria meningitidis FAM18 (serogroup C)
Neisseria gonorrhoeae FA 1090
Chromobacterium violaceum
Pseudogulbenkiania sp. NH8B
Ralstonia solanacearum GMI1000
Ralstonia solanacearum PSI07
Ralstonia solanacearum Po82
Ralstonia pickettii 12D
Ralstonia eutropha JMP134
Ralstonia eutropha H16
Cupriavidus metallidurans
Cupriavidus taiwanensis
Cupriavidus necator
Burkholderia mallei ATCC 23344
Burkholderia mallei SAVP1
Burkholderia mallei NCTC 10229
Burkholderia mallei NCTC 10247
Burkholderia pseudomallei K96243
Burkholderia pseudomallei 1710b
Burkholderia pseudomallei 1106a
Burkholderia pseudomallei 668
Burkholderia thailandensis E264
Burkholderia vietnamiensis
Burkholderia sp. 383
Burkholderia cenocepacia AU1054
Burkholderia cenocepacia HI2424
Burkholderia cenocepacia MC0-3
Burkholderia cenocepacia J2315
Burkholderia ambifaria AMMD
Burkholderia ambifaria MC40-6
Burkholderia multivorans ATCC 17616 (JGI)
Burkholderia multivorans ATCC 17616 (Tohoku)
Burkholderia xenovorans
Burkholderia phymatum
Burkholderia phytofirmans
Burkholderia glumae
Burkholderia sp. CCGE1001
Burkholderia sp. CCGE1002
Burkholderia sp. CCGE1003
Burkholderia gladioli
Burkholderia sp. YI23
Burkholderia phenoliruptrix
Bordetella pertussis Tohama I
Bordetella pertussis CS
Bordetella pertussis 18323
Bordetella parapertussis 12822
Bordetella parapertussis Bpp5
Bordetella bronchiseptica RB50
Bordetella bronchiseptica MO149
Bordetella bronchiseptica 253
Bordetella petrii
Bordetella avium
Achromobacter xylosoxidans
Taylorella equigenitalis MCE9
Pusillimonas sp. T7-7
Rhodoferax ferrireducens
Polaromonas sp. JS666
Polaromonas naphthalenivorans
Acidovorax avenae
Acidovorax sp. JS42
Acidovorax ebreus
Acidovorax avenae subsp. avenae ATCC 19860
Verminephrobacter eiseniae
Delftia acidovorans
Delftia sp. Cs1-4
Variovorax paradoxus S110
Variovorax paradoxus EPS
Comamonas testosteroni
Alicycliphilus denitrificans BC
Alicycliphilus denitrificans K601
Ramlibacter tataouinensis
Methylibium petroleiphilum
Herminiimonas arsenicoxydans
Collimonas fungivorans
Leptothrix cholodnii
Nitrosomonas europaea
Aromatoleum aromaticum EbN1
Azoarcus sp. BH72
Dechloromonas aromatica
Thauera sp. MZ1T
Thiobacillus denitrificans
Methylobacillus flagellatus
Helicobacter pylori 26695
Helicobacter pylori J99
Helicobacter pylori HPAG1
Helicobacter pylori Shi470
Helicobacter pylori G27
Helicobacter pylori P12
Helicobacter pylori B38
Helicobacter pylori B8
Helicobacter hepaticus
Helicobacter acinonychis
Wolinella succinogenes
Sulfurimonas denitrificans
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819
Campylobacter jejuni subsp. jejuni 81-176
Campylobacter jejuni RM1221
Campylobacter fetus
Campylobacter curvus
Campylobacter hominis ATCC BAA-381
Nitratifractor salsuginis
Desulfovibrio vulgaris Hildenborough
Desulfovibrio vulgaris DP4
Desulfovibrio vulgaris Miyazaki F
Desulfovibrio desulfuricans G20
Desulfovibrio desulfuricans ATCC 27774
Desulfovibrio magneticus
Lawsonia intracellularis PHE/MN1-00
Bdellovibrio bacteriovorus HD100
Anaeromyxobacter dehalogenans 2CP-C
Myxococcus xanthus
Stigmatella aurantiaca
Sorangium cellulosum
Rickettsia bellii RML369-C
Wolbachia wMel
Wolbachia wBm
Wolbachia sp. wRi
Wolbachia pipientis
Anaplasma marginale St. Maries
Anaplasma marginale Florida
Anaplasma centrale
Anaplasma phagocytophilum
Ehrlichia ruminantium Welgevonden (South Africa)
Ehrlichia ruminantium Welgevonden (France)
Ehrlichia ruminantium Gardel
Ehrlichia canis
Ehrlichia chaffeensis
Neorickettsia sennetsu
Neorickettsia risticii
Candidatus Pelagibacter ubique
Candidatus Midichloria mitochondrii
Mesorhizobium loti
Mesorhizobium ciceri
Mesorhizobium sp. BNC1
Sinorhizobium meliloti 1021
Sinorhizobium medicae
Sinorhizobium fredii NGR234
Agrobacterium tumefaciens C58
Agrobacterium radiobacter K84
Agrobacterium vitis S4
Agrobacterium sp. H13-3
Rhizobium etli CFN 42
Rhizobium etli CIAT 652
Rhizobium leguminosarum bv. viciae 3841
Rhizobium leguminosarum bv. trifolii WSM2304
Rhizobium leguminosarum bv. trifolii WSM1325
Rhizobium tropici
Candidatus Liberibacter asiaticus psy62
Candidatus Liberibacter solanacearum
Brucella melitensis bv. 1 16M
Brucella melitensis ATCC 23457
Brucella melitensis biovar Abortus
Brucella abortus 9-941
Brucella abortus S19
Brucella suis 1330
Brucella suis ATCC 23445
Brucella ovis
Brucella canis ATCC 23365
Brucella microti
Ochrobactrum anthropi
Bradyrhizobium japonicum USDA110
Bradyrhizobium japonicum USDA 6
Bradyrhizobium sp. ORS 278
Bradyrhizobium sp. BTAi1
Bradyrhizobium sp. S23321
Rhodopseudomonas palustris CGA009
Rhodopseudomonas palustris HaA2
Rhodopseudomonas palustris BisB18
Rhodopseudomonas palustris BisB5
Rhodopseudomonas palustris BisA53
Rhodopseudomonas palustris TIE-1
Rhodopseudomonas palustris DX-1
Nitrobacter winogradskyi
Nitrobacter hamburgensis
Oligotropha carboxidovorans OM5 (Mississippi)
Bartonella henselae
Bartonella quintana Toulouse
Bartonella bacilliformis
Bartonella tribocorum
Bartonella grahamii
Bartonella clarridgeiae
Xanthobacter autotrophicus
Azorhizobium caulinodans
Starkeya novella
Methylobacterium extorquens PA1
Methylobacterium extorquens AM1
Methylobacterium extorquens DM4
Methylobacterium extorquens CM4
Methylobacterium radiotolerans
Methylobacterium sp. 4-46
Methylobacterium populi
Methylobacterium nodulans
Beijerinckia indica
Methylocella silvestris
Hyphomicrobium denitrificans ATCC 51888
Rhodomicrobium vannielii
Pelagibacterium halotolerans
Caulobacter crescentus CB15
Caulobacter crescentus NA1000
Caulobacter sp. K31
Caulobacter segnis
Brevundimonas subvibrioides
Asticcacaulis excentricus
Ruegeria pomeroyi
Ruegeria sp. TM1040
Rhodobacter sphaeroides 2.4.1
Rhodobacter sphaeroides ATCC 17029
Rhodobacter sphaeroides ATCC 17025
Rhodobacter sphaeroides KD131
Rhodobacter capsulatus
Jannaschia sp. CCS1
Roseobacter denitrificans
Dinoroseobacter shibae
Ketogulonicigenium vulgare
Hyphomonas neptunium
Hirschia baltica
Novosphingobium aromaticivorans
Gluconobacter oxydans 621H
Granulibacter bethesdensis
Tistrella mobilis
Candidatus Puniceispirillum marinum
Polymorphum gilvum
Bacillus halodurans
Bacillus anthracis Ames
Bacillus anthracis Ames 0581
Bacillus anthracis Sterne
Bacillus cereus ATCC 14579
Bacillus cereus ATCC 10987
Bacillus cereus ZK
Bacillus cereus AH187
Bacillus cereus Q1
Bacillus cereus 03BB102
Bacillus thuringiensis 97-27
Bacillus thuringiensis Al Hakam
Bacillus weihenstephanensis
Bacillus clausii
Bacillus pumilus
Bacillus megaterium QM B1551
Bacillus megaterium DSM 319
Oceanobacillus iheyensis
Geobacillus kaustophilus
Geobacillus thermodenitrificans
Geobacillus sp. Y412MC61
Geobacillus sp. Y412MC52
Staphylococcus aureus subsp. aureus USA300_FPR3757 (CA-MRSA)
Staphylococcus aureus RF122
Staphylococcus epidermidis ATCC 12228
Staphylococcus epidermidis RP62A
Staphylococcus saprophyticus
Staphylococcus carnosus
Staphylococcus lugdunensis HKU09-01
Listeria monocytogenes EGD-e
Listeria monocytogenes F2365
Listeria monocytogenes HCC23
Listeria monocytogenes Clip81459
Listeria monocytogenes 08-5578
Listeria monocytogenes 08-5923
Listeria monocytogenes 10403S
Listeria monocytogenes FSL R2-561
Listeria monocytogenes Finland 1998
Listeria monocytogenes J0161
Listeria monocytogenes SLCC2372
Listeria monocytogenes SLCC5850
Listeria monocytogenes SLCC2479
Listeria innocua
Listeria welshimeri SLCC5334
Lysinibacillus sphaericus
Exiguobacterium sibiricum
Macrococcus caseolyticus
Paenibacillus sp. JDR-2
Paenibacillus sp. Y412MC10
Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446
Kyrpidia tusciae
Lactococcus lactis subsp. lactis IL1403
Lactococcus lactis subsp. lactis KF147
Lactococcus lactis subsp. cremoris SK11
Lactococcus lactis subsp. cremoris MG1363
Streptococcus pyogenes SF370 (serotype M1)
Streptococcus pyogenes MGAS5005 (serotype M1)
Streptococcus pyogenes MGAS8232 (serotype M18)
Streptococcus pyogenes MGAS315 (serotype M3)
Streptococcus pyogenes SSI-1 (serotype M3)
Streptococcus pyogenes MGAS10270 (serotype M2)
Streptococcus pyogenes MGAS10750 (serotype M4)
Streptococcus pyogenes MGAS2096 (serotype M12)
Streptococcus pyogenes MGAS9429 (serotype M12)
Streptococcus pyogenes Manfredo (serotype M5)
Streptococcus pyogenes MGAS10394 (serotype M6)
Streptococcus pyogenes MGAS6180 (serotype M28)
Streptococcus pyogenes NZ131 (serotype M49)
Streptococcus pneumoniae TIGR4 (virulent serotype 4)
Streptococcus pneumoniae D39 (virulent serotype 2)
Streptococcus pneumoniae R6 (avirulent)
Streptococcus pneumoniae G54 (serotype 19F)
Streptococcus pneumoniae ATCC 700669 (serotype 23F ST81 lineage)
Streptococcus pneumoniae 70585
Streptococcus pneumoniae JJA
Streptococcus pneumoniae P1031
Streptococcus pneumoniae Taiwan19F-14
Streptococcus pneumoniae TCH8431/19A
Streptococcus agalactiae 2603 (serotype V)
Streptococcus agalactiae NEM316 (serotype III)
Streptococcus agalactiae A909 (serotype Ia)
Streptococcus mutans UA159
Streptococcus mutans NN2025
Streptococcus thermophilus CNRZ1066
Streptococcus thermophilus LMG18311
Streptococcus thermophilus LMD-9
Streptococcus sanguinis
Streptococcus suis 05ZYH33
Streptococcus suis 98HAH33
Streptococcus suis BM407
Streptococcus suis P1/7
Streptococcus suis SC84
Streptococcus gordonii
Streptococcus equi subsp. zooepidemicus H70
Streptococcus equi subsp. zooepidemicus MGCS10565
Streptococcus equi subsp. equi 4047
Streptococcus dysgalactiae subsp. equisimilis GGS_124
Streptococcus gallolyticus UCN34
Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069
Streptococcus mitis B6
Streptococcus pseudopneumoniae
Lactobacillus plantarum WCFS1
Lactobacillus plantarum JDM1
Lactobacillus plantarum subsp. plantarum ST-III
Lactobacillus johnsonii NCC 533
Lactobacillus johnsonii FI9785
Lactobacillus acidophilus NCFM
Lactobacillus sakei
Lactobacillus salivarius UCC118
Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
Lactobacillus delbrueckii subsp. bulgaricus ND02
Lactobacillus brevis ATCC 367
Lactobacillus casei ATCC 334
Lactobacillus gasseri
Lactobacillus reuteri DSM 20016
Lactobacillus reuteri JCM 1112
Lactobacillus helveticus DPC 4571
Lactobacillus rhamnosus GG
Lactobacillus rhamnosus Lc 705
Pediococcus pentosaceus
Enterococcus faecalis V583
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
Leuconostoc citreum
Leuconostoc kimchii
Leuconostoc gasicomitatum
Leuconostoc sp. C2
Aerococcus urinae
Weissella koreensis
Clostridium acetobutylicum ATCC 824
Clostridium acetobutylicum DSM 1731
Clostridium perfringens 13
Clostridium perfringens ATCC 13124
Clostridium perfringens SM101
Clostridium tetani E88
Clostridium novyi
Clostridium botulinum A ATCC 3502
Clostridium botulinum A ATCC 19397
Clostridium botulinum A Hall
Clostridium botulinum A2
Clostridium botulinum A3 Loch Maree
Clostridium botulinum B Eklund 17B
Clostridium botulinum B1 Okra
Clostridium botulinum Ba4
Clostridium botulinum BKT015925
Clostridium botulinum E3
Clostridium botulinum F Langeland
Clostridium beijerinckii
Clostridium kluyveri DSM 555
Clostridium kluyveri NBRC 12016
Clostridium phytofermentans
Clostridium ljungdahlii
Clostridium saccharolyticum WM1
Clostridium cellulovorans
Clostridium difficile CD196
Clostridium difficile R20291
Alkaliphilus oremlandii
Candidatus Arthromitus sp. SFB-mouse-Japan
Desulfitobacterium hafniense Y51
Desulfitobacterium hafniense DCB-2
Syntrophobotulus glycolicus
Eubacterium eligens
Eubacterium rectale ATCC 33656
Butyrivibrio proteoclasticus
Clostridium lentocellum
Roseburia hominis
Ruminococcus albus
Thermaerobacter marianensis
Thermoanaerobacter tengcongensis
Thermoanaerobacter sp. X514
Thermoanaerobacter sp. X513
Thermoanaerobacter pseudethanolicus
Thermoanaerobacter italicus
Thermoanaerobacter mathranii
Thermoanaerobacter brockii
Moorella thermoacetica
Thermodesulfobium narugense
Mycoplasma mycoides subsp. mycoides SC PG1
Mycoplasma mobile
Mycoplasma hyopneumoniae 232
Mycoplasma hyopneumoniae J
Mycoplasma hyopneumoniae 7448
Mycoplasma synoviae
Mycoplasma hominis
Acholeplasma laidlawii
Mycobacterium tuberculosis H37Rv
Mycobacterium tuberculosis CDC1551
Mycobacterium tuberculosis H37Ra
Mycobacterium tuberculosis F11
Mycobacterium tuberculosis KZN 1435
Mycobacterium bovis AF2122/97
Mycobacterium bovis BCG Pasteur 1173P2
Mycobacterium bovis BCG Tokyo 172
Mycobacterium leprae Br4923
Mycobacterium avium subsp. paratuberculosis K-10
Mycobacterium avium 104
Mycobacterium intracellulare MOTT-02
Mycobacterium intracellulare ATCC 13950
Mycobacterium smegmatis MC2 155
Mycobacterium ulcerans
Mycobacterium vanbaalenii
Mycobacterium gilvum PYR-GCK
Mycobacterium gilvum Spyr1
Mycobacterium abscessus ATCC 19977
Mycobacterium sp. MCS
Mycobacterium sp. KMS
Mycobacterium sp. JLS
Mycobacterium marinum M
Mycobacterium rhodesiae
Amycolicicoccus subflavus
Corynebacterium glutamicum ATCC 13032 (Kyowa Hakko)
Corynebacterium glutamicum ATCC 13032 (Bielefeld)
Corynebacterium glutamicum R
Corynebacterium efficiens
Corynebacterium diphtheriae NCTC 13129
Corynebacterium jeikeium
Corynebacterium urealyticum DSM 7109
Corynebacterium aurimucosum
Corynebacterium kroppenstedtii
Corynebacterium pseudotuberculosis FRC41
Nocardia farcinica
Rhodococcus jostii RHA1
Rhodococcus erythropolis
Rhodococcus opacus
Rhodococcus equi
Gordonia bronchialis
Tsukamurella paurometabola
Segniliparus rotundus
Streptomyces coelicolor
Streptomyces avermitilis
Streptomyces griseus
Streptomyces scabiei
Streptomyces violaceusniger
Streptomyces bingchenggensis
Tropheryma whipplei Twist
Tropheryma whipplei TW08/27
Leifsonia xyli xyli CTCB07
Clavibacter michiganensis subsp. michiganensis
Clavibacter michiganensis subsp. sepedonicus
Microbacterium testaceum
Arthrobacter sp. FB24
Arthrobacter aurescens
Arthrobacter chlorophenolicus
Arthrobacter arilaitensis
Renibacterium salmoninarum
Kocuria rhizophila
Micrococcus luteus
Rothia mucilaginosa
Rothia dentocariosa
Beutenbergia cavernae
Brachybacterium faecium
Jonesia denitrificans
Kytococcus sedentarius
Xylanimonas cellulosilytica
Isoptericola variabilis
Sanguibacter keddieii
Cellulomonas flavigena
Intrasporangium calvum
Propionibacterium acnes KPA171202
Propionibacterium acnes SK137
Propionibacterium freudenreichii
Microlunatus phosphovorus
Nocardioides sp. JS614
Kribbella flavida
Thermobifida fusca
Nocardiopsis dassonvillei
Thermomonospora curvata
Streptosporangium roseum
Frankia sp. CcI3
Frankia sp. EAN1pec
Frankia sp. EuI1c
Frankia alni
Acidothermus cellulolyticus
Nakamurella multipartita
Geodermatophilus obscurus
Blastococcus saxobsidens
Modestobacter marinus
Kineococcus radiotolerans
Saccharopolyspora erythraea
Saccharomonospora viridis
Thermobispora bispora
Amycolatopsis mediterranei U32
Amycolatopsis mediterranei S699
Amycolatopsis mediterranei S699
Pseudonocardia dioxanivorans
Actinosynnema mirum
Salinispora tropica
Salinispora arenicola
Micromonospora aurantiaca
Micromonospora sp. L5
Verrucosispora maris
Actinoplanes missouriensis
Catenulispora acidiphila
Stackebrandtia nassauensis
Arcanobacterium haemolyticum
Mobiluncus curtisii
Bifidobacterium longum NCC2705
Bifidobacterium longum DJO10A
Bifidobacterium longum subsp. infantis ATCC 15697 (JGI)
Bifidobacterium longum subsp. infantis 157F
Bifidobacterium longum subsp. longum JDM301
Bifidobacterium longum subsp. longum BBMN68
Bifidobacterium longum subsp. longum JCM 1217
Bifidobacterium adolescentis
Bifidobacterium animalis subsp. lactis AD011
Bifidobacterium animalis subsp. lactis Bl-04
Bifidobacterium animalis subsp. lactis DSM 10140
Bifidobacterium dentium
Bifidobacterium bifidum S17
Bifidobacterium bifidum PRL2010
Gardnerella vaginalis 409-05
Conexibacter woesei
Cryptobacterium curtum
Slackia heliotrinireducens
Atopobium parvulum
Eggerthella lenta
Olsenella uli
Coriobacterium glomerans
Chlamydia trachomatis D/UW-3/CX
Chlamydia trachomatis A/HAR-13
Chlamydia trachomatis L2/434/Bu
Chlamydia trachomatis L2b/UCH-1/proctitis
Chlamydia pneumoniae CWL029
Chlamydia pneumoniae AR39
Chlamydia pneumoniae J138
Chlamydia pneumoniae TW183
Chlamydophila caviae
Chlamydophila abortus
Chlamydophila felis
Candidatus Protochlamydia amoebophila
Parachlamydia acanthamoebae
Waddlia chondrophila
Simkania negevensis
Borrelia burgdorferi B31
Borrelia garinii PBi
Leptospira interrogans serovar Lai 56601
Leptospira interrogans serovar Copenhageni
Leptospira biflexa serovar Patoc Patoc 1 (Paris)
Leptospira biflexa serovar Patoc Patoc 1 (Ames)
Granulicella tundricola
Candidatus Solibacter usitatus
Bacteroides thetaiotaomicron
Bacteroides fragilis YCH46
Bacteroides fragilis NCTC9343
Bacteroides vulgatus
Bacteroides helcogenes
Porphyromonas gingivalis W83
Prevotella ruminicola
Salinibacter ruber DSM 13855
Cytophaga hutchinsonii
Leadbetterella byssophila
Gramella forsetii
Flavobacterium psychrophilum
Cellulophaga algicola
Cellulophaga lytica
Fluviicola taffensis
Fusobacterium nucleatum subsp. nucleatum ATCC 25586
Leptotrichia buccalis
Sebaldella termitidis
Streptobacillus moniliformis
Ilyobacter polytropus
Coraliomargarita akajimensis
Gemmatimonas aurantiaca
Rhodopirellula baltica
Pirellula staleyi
Planctomyces limnophilus
Isosphaera pallida
Aminobacterium colombiense
Anaerobaculum mobile
Synechocystis sp. PCC 6803
Synechococcus sp. WH8102
Synechococcus elongatus PCC6301
Synechococcus elongatus PCC7942
Synechococcus sp. CC9605
Synechococcus sp. CC9902
Synechococcus sp. CC9311
Synechococcus sp. RCC307
Synechococcus sp. WH7803
Synechococcus sp. JA-3-3Ab
Thermosynechococcus elongatus
Cyanothece sp. ATCC 51142
Gloeobacter violaceus
Anabaena sp. PCC7120
Nostoc punctiforme
Anabaena variabilis
Prochlorococcus marinus SS120
Prochlorococcus marinus MIT 9313
Prochlorococcus marinus MIT 9303
Trichodesmium erythraeum
Dehalococcoides ethenogenes
Dehalococcoides sp. CBDB1
Dehalococcoides sp. BAV1
Dehalococcoides sp. VS
Dehalococcoides sp. GT
Roseiflexus sp. RS-1
Roseiflexus castenholzii DSM13941
Chloroflexus aggregans
Chloroflexus sp. Y-400-fl
Herpetosiphon aurantiacus
Sphaerobacter thermophilus
Thermus thermophilus HB27
Thermus thermophilus HB8
Aquifex aeolicus
Thermovibrio ammonificans
Thermotoga sp. RQ2
Methanococcus maripaludis S2
Methanosarcina acetivorans
Methanosarcina barkeri
Methanosarcina mazei Go1
Methanocella arvoryzae
Archaeoglobus fulgidus
Haloarcula marismortui
Haloquadratum walsbyi DSM 16790
Natronomonas pharaonis
Halorhabdus utahensis
Picrophilus torridus
Aeropyrum pernix
184%
150%
122%
100%
82%
67%
55%