KEGG    Microbial metabolism in diverse environments - Treponema pallidum subsp. pallidum Mexico A Help
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  • KEGG module
  • Energy metabolism 
    • Carbon fixation 
      • M00165 Reductive pentose phosphate cycle (Calvin cycle)
      • M00166 Reductive pentose phosphate cycle, ribulose-5P => glyceraldehyde-3P
      • M00167 Reductive pentose phosphate cycle, glyceraldehyde-3P => ribulose-5P
      • M00168 CAM (Crassulacean acid metabolism), dark
      • M00169 CAM (Crassulacean acid metabolism), light
      • M00172 C4-dicarboxylic acid cycle, NADP - malic enzyme type
      • M00171 C4-dicarboxylic acid cycle, NAD - malic enzyme type
      • M00170 C4-dicarboxylic acid cycle, phosphoenolpyruvate carboxykinase type
      • M00173 Reductive citrate cycle (Arnon-Buchanan cycle)
      • M00376 3-Hydroxypropionate bi-cycle
      • M00375 Hydroxypropionate-hydroxybutylate cycle
      • M00374 Dicarboxylate-hydroxybutyrate cycle
      • M00377 Reductive acetyl-CoA pathway (Wood-Ljungdahl pathway)
      • M00579 Phosphate acetyltransferase-acetate kinase pathway, acetyl-CoA => acetate
    • Nitrogen metabolism 
      • M00175 Nitrogen fixation, nitrogen => ammonia
      • M00531 Assimilatory nitrate reduction, nitrate => ammonia
      • M00530 Dissimilatory nitrate reduction, nitrate => ammonia
      • M00529 Denitrification, nitrate => nitrogen
      • M00528 Nitrification, ammonia => nitrite
    • Methane metabolism 
      • M00567 Methanogenesis, CO2 => methane
      • M00357 Methanogenesis, acetate => methane
      • M00356 Methanogenesis, methanol => methane
      • M00563 Methanogenesis, methylamine/dimethylamine/trimethylamine => methane
      • M00358 Coenzyme M biosynthesis
      • M00174 Methane oxidation, methanotroph, methane => formaldehyde
      • M00346 Formaldehyde assimilation, serine pathway
      • M00345 Formaldehyde assimilation, ribulose monophosphate pathway
      • M00344 Formaldehyde assimilation, xylulose monophosphate pathway
      • M00378 F420 biosynthesis
      • M00422 Acetyl-CoA pathway, CO2 => acetyl-CoA
    • Sulfur metabolism 
      • M00176 Assimilatory sulfate reduction, sulfate => H2S
      • M00596 Dissimilatory sulfate reduction, sulfate => H2S
      • M00595 Thiosulfate oxidation by SOX complex, thiosulfate => sulfate
  • Carbohydrate and lipid metabolism 
    • Central carbohydrate metabolism 
      • M00004 Pentose phosphate pathway (Pentose phosphate cycle)
      • M00006 Pentose phosphate pathway, oxidative phase, glucose 6P => ribulose 5P
      • M00007 Pentose phosphate pathway, non-oxidative phase, fructose 6P => ribose 5P
      • M00580 Pentose phosphate pathway, archaea, fructose 6P => ribose 5P
      • M00008 Entner-Doudoroff pathway, glucose-6P => glyceraldehyde-3P + pyruvate
      • M00308 Semi-phosphorylative Entner-Doudoroff pathway, gluconate => glycerate-3P
      • M00309 Non-phosphorylative Entner-Doudoroff pathway, gluconate/galactonate => glycerate
    • Other carbohydrate metabolism 
      • M00373 Ethylmalonyl pathway
  • Nucleotide and amino acid metabolism 
    • Lysine metabolism 
      • M00608 2-Oxocarboxylic acid chain extension, 2-oxoglutarate => 2-oxoadipate => 2-oxopimelate => 2-oxosuberate
    • Aromatic amino acid metabolism 
      • M00533 Homoprotocatechuate degradation, homoprotocatechuate => 2-oxohept-3-enedioate
      • M00545 Trans-cinnamate degradation, trans-cinnamate => 2-oxopent-4-enoate + fumarate
    • Cofactor and vitamin biosynthesis 
      • M00622 Nicotinate degradation, nicotinate => fumarate
      • M00550 Ascorbate degradation, ascorbate => D-xylulose-5P
    • Alkaloid and other secondary metabolite biosynthesis 
      • M00033 Ectoine biosynthesis, aspartate => ectoine
  • Secondary metabolism 
    • Aromatics degradation 
      • M00538 Toluene degradation, toluene => benzoate
      • M00537 Xylene degradation, xylene => methylbenzoate
      • M00419 Cymene degradation, p-cymene => p-cumate
      • M00547 Benzene/toluene degradation, benzene => catechol / toluene => 3-methylcatechol
      • M00548 Benzene degradation, benzene => catechol
      • M00551 Benzoate degradation, benzoate => catechol / methylbenzoate => methylcatechol
      • M00568 Catechol ortho-cleavage, catechol => 3-oxoadipate
      • M00569 Catechol meta-cleavage, catechol => pyruvate + acetaldehyde
      • M00539 Cumate degradation, p-cumate => 2-oxopent-4-enoate + 2-methylpropanoate
      • M00543 Biphenyl degradation, biphenyl => 2-oxopent-4-enoate + benzoate
      • M00544 Carbazole degradation, carbazole => 2-oxopent-4-enoate + anthranilate
      • M00418 Toluene degradation, anaerobic, toluene => benzoyl-CoA
      • M00541 Benzoyl-CoA degradation, benzoyl-CoA => 3-hydroxypimeloyl-CoA
      • M00540 Benzoate degradation, cyclohexanecarboxylic acid =>pimeloyl-CoA
      • M00534 Naphthalene degradation, naphthalene => salicylate
      • M00623 Phthalate degradation, phthalate => protocatechuate
      • M00624 Terephthalate degradation, terephthalate => 3,4-dihydroxybenzoate