KEGG Software
Web Servers
The following web tools are developed and maintained by Kanehisa Laboratories.| KEGG Mapper | KEGG pathway mapping and BRITE mapping tools for biological interpretation of genomic, transcriptomic, metabolomic, and other large-scale data sets. |
| KEGG Atlas | An advanced graphical interface for exploration of KEGG global maps. Features similar to KEGG Mapper are also available. |
The following web servers are developed and maintained by Kyoto University Bioinformatics Center as part of its GenomeNet service.
| KAAS | KEGG automatic annotation server. Gene sequences in a genome are compared by BLAST against KEGG GENES for ortholog (KEGG Orthology) assignment, enabling KEGG pathway mapping and BRITE mapping. [reference] |
| KEGG OC | KEGG OC viewer for browsing and analyzing ortholog clusters (OCs) computationally generated from the KEGG SSDB database. [reference] |
| SIMCOMP SUBCOMP | Chemical structure similarity search against KEGG COMPOUND, KEGG DRUG, and other databases. SIMCOMP is based on 2D graph representation, while SUBCOMP is based on bit-string representation of chemical structures. [references] |
| KCaM | Glycan structure similarity search against KEGG GLYCAN using tree structure comparison methods. [reference] |
| E-zyme | Computational assignment of EC number sub-subclasses from chemical structure transformation patterns of substrates and products. [references] |
| PathPred | Prediction of microbial biodegradation pathways and plant second metabolite biosynthesis pathways using reaction patterns in KEGG RCLASS. [references] |
| GENIES | Gene network prediction from heterogeneous data sets using kernel methods and partially known network information. [references] |
The following service is also available at GenomeNet.
Desktop Applications
KegTools are Java applications that run on the Mac OS X, Windows, and Linux platforms. They were developed by Kanehisa Laboratories, but are no longer maintained.| KegHier | for browsing and searching BRITE functional hierarchies as well as for manipulating locally created hierarchical text files |
| KegArray | for analysis of transcriptome data (gene expression profiles) and metabolome data (compound profiles) with capabilities of KEGG pathway mapping and BRITE mapping |
| KegDraw | for drawing chemical compound structures and glycan structures with capabilities to search against the KEGG databases |
KEGG Mirror Server
| iKeg server is a commercial product distributed by Pathway Solutions. It allows local implementation and customization of KEGG, as well as synchronization with the KEGG website. iKeg runs on Linux. Contact Pathway Solutions for more details. |
Last updated: April 15, 2015