Lipopolysaccharide biosynthesis - Reference pathway (KO)
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Reference pathway
Reference pathway (KO)
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Escherichia coli K-12 MG1655
Escherichia coli K-12 W3110
Escherichia coli K-12 DH10B
Escherichia coli K-12 MC4100(MuLac) BW2952
Escherichia coli O157:H7 EDL933 (EHEC)
Escherichia coli O157:H7 Sakai (EHEC)
Escherichia coli O157:H7 EC4115 (EHEC)
Escherichia coli O157:H7 TW14359 (EHEC)
Escherichia coli O127:H6 (EPEC)
Escherichia coli O6:H1 CFT073 (UPEC)
Escherichia coli UTI89 (UPEC)
Escherichia coli 536 (UPEC)
Escherichia coli O1 (APEC)
Escherichia coli O139:H28 E24377A (ETEC)
Escherichia coli O9 HS (commensal)
Escherichia coli SECEC
Escherichia coli O152:H28 SE11 (commensal)
Escherichia coli ATCC 8739
Escherichia coli 55989 (EAEC)
Escherichia coli ED1a
Escherichia coli IAI1 (commensal)
Escherichia coli O7:K1 IAI39 (ExPEC)
Escherichia coli O45:K1 S88 (ExPEC)
Escherichia coli O17:K52:H18 UMN026 (ExPEC)
Escherichia coli LF82
Escherichia coli BL21
Escherichia coli BL21(DE3)
Escherichia coli B REL606
Escherichia coli O103:H2 12009
Escherichia coli O111:H- 11128
Escherichia coli O26:H11 11368
Escherichia fergusonii
Salmonella enterica subsp. enterica serovar Typhi CT18
Salmonella enterica subsp. enterica serovar Typhi Ty2
Salmonella enterica subsp. enterica serovar Paratyphi A ATCC9150
Salmonella enterica subsp. enterica serovar Paratyphi A AKU12601
Salmonella enterica subsp. enterica serovar Paratyphi B
Salmonella enterica subsp. enterica serovar Paratyphi C
Salmonella enterica subsp. enterica serovar Choleraesuis
Salmonella enterica subsp. enterica serovar Heidelberg
Salmonella enterica subsp. enterica serovar Newport
Salmonella enterica subsp. enterica serovar Schwarzengrund
Salmonella enterica subsp. enterica serovar Agona
Salmonella enterica subsp. enterica serovar Dublin
Salmonella enterica subsp. enterica serovar Gallinarum
Salmonella enterica subsp. enterica serovar Enteritidis
Salmonella enterica subsp. arizonae
Salmonella typhimurium LT2
Yersinia pestis CO92 (biovar Orientalis)
Yersinia pestis KIM (biovar Mediaevalis)
Yersinia pestis Mediaevails (biovar Mediaevalis)
Yersinia pestis Antiqua (biovar Antiqua)
Yersinia pestis Nepal516 (biovar Antiqua)
Yersinia pestis Angola (biovar Antiqua)
Yersinia pestis Pestoides (biovar Microtus)
Yersinia pseudotuberculosis IP32953
Yersinia pseudotuberculosis IP31758
Yersinia pseudotuberculosis YPIII
Yersinia pseudotuberculosis PB1/+
Yersinia enterocolitica
Shigella flexneri 301 (serotype 2a)
Shigella flexneri 2457T (serotype 2a)
Shigella flexneri 8401 (serotype 5b)
Shigella sonnei
Shigella boydii Sb227
Shigella boydii CDC 3083-94
Shigella dysenteriae
Erwinia carotovora
Pectobacterium carotovorum
Pectobacterium wasabiae
Erwinia tasmaniensis
Photorhabdus luminescens
Photorhabdus asymbiotica
Wigglesworthia glossinidia
Sodalis glossinidius
Enterobacter sp. 638
Enterobacter sakazakii
Cronobacter turicensis
Klebsiella pneumoniae
Klebsiella pneumoniae 342
Klebsiella pneumoniae NTUH-K2044
Klebsiella variicola
Citrobacter koseri ATCC BAA-895
Citrobacter rodentium
Serratia proteamaculans
Proteus mirabilis
Edwardsiella ictaluri
Edwardsiella tarda
Candidatus Blochmannia floridanus
Candidatus Blochmannia pennsylvanicus
Candidatus Hamiltonella defensa
Dickeya dadantii Ech703
Dickeya dadantii Ech586
Dickeya zeae
Haemophilus influenzae Rd KW20 (serotype d)
Haemophilus influenzae 86-028NP (nontypeable)
Haemophilus influenzae PittEE
Haemophilus influenzae PittGG
Haemophilus ducreyi
Haemophilus parasuis
Haemophilus somnus 129PT
Haemophilus somnus 2336
Pasteurella multocida
Mannheimia succiniciproducens
Actinobacillus pleuropneumoniae L20 (serotype 5b)
Actinobacillus pleuropneumoniae JL03 (serotype 3)
Actinobacillus pleuropneumoniae AP76 (serotype 7)
Actinobacillus succinogenes
Aggregatibacter aphrophilus
Aggregatibacter actinomycetemcomitans
Xylella fastidiosa 9a5c
Xylella fastidiosa Temecula1
Xylella fastidiosa M12
Xylella fastidiosa M23
Xanthomonas campestris pv. campestris ATCC 33913
Xanthomonas campestris pv. campestris 8004
Xanthomonas campestris pv. campestris B100
Xanthomonas campestris pv. vesicatoria
Xanthomonas axonopodis
Xanthomonas oryzae KACC10331
Xanthomonas oryzae MAFF311018
Xanthomonas oryzae PXO99A
Xanthomonas albilineans
Stenotrophomonas maltophilia K279a
Stenotrophomonas maltophilia R551-3
Vibrio cholerae O1
Vibrio cholerae O395
Vibrio cholerae M66-2
Vibrio cholerae MJ-1236
Vibrio vulnificus CMCP6
Vibrio vulnificus YJ016
Vibrio parahaemolyticus
Vibrio harveyi
Vibrio splendidus
Vibrio sp. Ex25
Vibrio fischeri
Vibrio fischeri MJ11
Aliivibrio salmonicida LFI1238
Photobacterium profundum
Pseudomonas aeruginosa PAO1
Pseudomonas aeruginosa UCBPP-PA14
Pseudomonas aeruginosa PA7
Pseudomonas aeruginosa LESB58
Pseudomonas putida KT2440
Pseudomonas putida F1
Pseudomonas putida GB-1
Pseudomonas putida W619
Pseudomonas syringae pv. tomato DC3000
Pseudomonas syringae pv. syringae B728a
Pseudomonas syringae pv. phaseolicola 1448A
Pseudomonas fluorescens Pf-5
Pseudomonas fluorescens Pf0-1
Pseudomonas fluorescens SBW25
Pseudomonas entomophila
Pseudomonas mendocina
Pseudomonas stutzeri
Cellvibrio japonicus
Azotobacter vinelandii
Psychrobacter arcticum
Psychrobacter cryohalolentis
Psychrobacter sp. PRwf-1
Acinetobacter sp. ADP1
Acinetobacter baumannii ATCC 17978
Acinetobacter baumannii SDF
Acinetobacter baumannii AYE
Acinetobacter baumannii ACICU
Acinetobacter baumannii AB0057
Acinetobacter baumannii AB307-0294
Shewanella oneidensis
Shewanella denitrificans
Shewanella frigidimarina
Shewanella amazonensis
Shewanella baltica OS155
Shewanella baltica OS185
Shewanella baltica OS195
Shewanella baltica OS223
Shewanella loihica
Shewanella putrefaciens
Shewanella sediminis
Shewanella pealeana
Shewanella sp. MR-4
Shewanella sp. MR-7
Shewanella sp. ANA-3
Shewanella sp. W3-18-1
Shewanella halifaxensis
Shewanella woodyi ATCC 51908
Shewanella piezotolerans WP3
Idiomarina loihiensis
Colwellia psychrerythraea
Pseudoalteromonas haloplanktis
Pseudoalteromonas atlantica
Saccharophagus degradans
Marinobacter aquaeolei
Alteromonas macleodii
Psychromonas ingrahamii
Teredinibacter turnerae
Coxiella burnetii RSA 493
Coxiella burnetii RSA 331
Coxiella burnetii Dugway 5J108-111
Coxiella burnetii CbuG_Q212
Coxiella burnetii CbuK_Q154
Legionella pneumophila Philadelphia 1
Legionella pneumophila Lens
Legionella pneumophila Paris
Legionella pneumophila Corby
Methylococcus capsulatus
Francisella tularensis subsp. tularensis SCHU S4
Francisella tularensis subsp. tularensis FSC 198
Francisella tularensis subsp. tularensis WY96-3418
Francisella tularensis subsp. holarctica LVS
Francisella tularensis subsp. holarctica OSU18
Francisella tularensis subsp. holarctica FTNF002-00
Francisella tularensis subsp. mediasiatica FSC147
Francisella novicida U112
Francisella philomiragia
Thiomicrospira crunogena
Nitrosococcus oceani
Allochromatium vinosum
Alkalilimnicola ehrlichei
Halorhodospira halophila
Thioalkalivibrio sp. HL-EbGR7
Halothiobacillus neapolitanus
Hahella chejuensis
Chromohalobacter salexigens
Alcanivorax borkumensis
Marinomonas sp. MWYL1
Aeromonas hydrophila
Aeromonas salmonicida
Tolumonas auensis
Dichelobacter nodosus
Acidithiobacillus ferrooxidans ATCC 53993
Acidithiobacillus ferrooxidans ATCC 23270
Candidatus Ruthia magnifica
Candidatus Vesicomyosocius okutanii
Kangiella koreensis
Neisseria meningitidis Z2491 (serogroup A)
Neisseria meningitidis MC58 (serogroup B)
Neisseria meningitidis FAM18 (serogroup C)
Neisseria meningitidis 053442 (serogroup C)
Neisseria meningitidis alpha14
Neisseria gonorrhoeae FA 1090
Neisseria gonorrhoeae NCCP11945
Chromobacterium violaceum
Laribacter hongkongensis
Ralstonia solanacearum
Ralstonia pickettii 12J
Ralstonia pickettii 12D
Ralstonia eutropha JMP134
Ralstonia eutropha H16
Ralstonia metallidurans
Cupriavidus taiwanensis
Burkholderia mallei ATCC 23344
Burkholderia mallei SAVP1
Burkholderia mallei NCTC 10229
Burkholderia mallei NCTC 10247
Burkholderia pseudomallei K96243
Burkholderia pseudomallei 1710b
Burkholderia pseudomallei 1106a
Burkholderia pseudomallei 668
Burkholderia pseudomallei MSHR346
Burkholderia thailandensis
Burkholderia vietnamiensis
Burkholderia sp. 383
Burkholderia cenocepacia AU1054
Burkholderia cenocepacia HI2424
Burkholderia cenocepacia MC0-3
Burkholderia cenocepacia J2315
Burkholderia cepacia
Burkholderia ambifaria MC40-6
Burkholderia multivorans ATCC 17616 (JGI)
Burkholderia multivorans ATCC 17616 (Tohoku)
Burkholderia xenovorans
Burkholderia phymatum
Burkholderia phytofirmans
Burkholderia glumae
Polynucleobacter sp. QLW-P1DMWA-1
Polynucleobacter necessarius
Bordetella pertussis
Bordetella parapertussis
Bordetella bronchiseptica
Bordetella petrii
Bordetella avium
Rhodoferax ferrireducens
Polaromonas sp. JS666
Polaromonas naphthalenivorans
Acidovorax avenae
Acidovorax sp. JS42
Acidovorax ebreus
Verminephrobacter eiseniae
Delftia acidovorans
Variovorax paradoxus
Comamonas testosteroni
Methylibium petroleiphilum
Herminiimonas arsenicoxydans
Minibacterium massiliensis
Leptothrix cholodnii
Nitrosomonas europaea
Nitrosomonas eutropha
Nitrosospira multiformis
Aromatoleum aromaticum EbN1
Azoarcus sp. BH72
Dechloromonas aromatica
Thauera sp. MZ1T
Thiobacillus denitrificans
Methylobacillus flagellatus
Methylotenera mobilis
Methylovorus sp. SIP3-4
Accumulibacter phosphatis
Helicobacter pylori 26695
Helicobacter pylori J99
Helicobacter pylori HPAG1
Helicobacter pylori Shi470
Helicobacter pylori G27
Helicobacter pylori P12
Helicobacter pylori B38
Helicobacter hepaticus
Helicobacter acinonychis
Wolinella succinogenes
Sulfurimonas denitrificans
Campylobacter jejuni NCTC11168
Campylobacter jejuni RM1221
Campylobacter jejuni 81-176
Campylobacter jejuni 81116
Campylobacter jejuni subsp. doylei 269.97
Campylobacter fetus
Campylobacter curvus
Campylobacter hominis ATCC BAA-381
Campylobacter concisus 13826
Campylobacter lari
Arcobacter butzleri
Sulfurospirillum deleyianum
Nitratiruptor sp. SB155-2
Sulfurovum sp. NBC37-1
Nautilia profundicola
Geobacter sulfurreducens
Geobacter metallireducens
Geobacter uraniumreducens
Geobacter lovleyi
Geobacter bemidjiensis
Geobacter sp. FRC-32
Geobacter sp. M21
Pelobacter carbinolicus
Pelobacter propionicus
Desulfovibrio vulgaris Hildenborough
Desulfovibrio vulgaris DP4
Desulfovibrio vulgaris Miyazaki F
Desulfovibrio desulfuricans G20
Desulfovibrio desulfuricans ATCC 27774
Desulfovibrio magneticus
Desulfovibrio salexigens
Lawsonia intracellularis
Desulfomicrobium baculatum
Desulfohalobium retbaense
Bdellovibrio bacteriovorus
Desulfotalea psychrophila
Desulfococcus oleovorans
Desulfatibacillum alkenivorans
Desulfobacterium autotrophicum
Anaeromyxobacter dehalogenans 2CP-C
Anaeromyxobacter dehalogenans 2CP-1
Anaeromyxobacter sp. Fw109-5
Anaeromyxobacter sp. K
Myxococcus xanthus
Sorangium cellulosum
Haliangium ochraceum
Syntrophus aciditrophicus
Syntrophobacter fumaroxidans
Rickettsia prowazekii
Rickettsia typhi
Rickettsia canadensis
Rickettsia conorii
Rickettsia felis
Rickettsia akari
Rickettsia rickettsii Sheila Smith
Rickettsia rickettsii Iowa
Rickettsia massiliae
Rickettsia peacockii
Rickettsia africae
Rickettsia bellii RML369-C
Rickettsia bellii OSU 85-389
Candidatus Pelagibacter ubique
Mesorhizobium loti
Mesorhizobium sp. BNC1
Parvibaculum lavamentivorans
Sinorhizobium meliloti
Sinorhizobium medicae
Agrobacterium tumefaciens C58
Agrobacterium tumefaciens C58 (Cereon)
Agrobacterium radiobacter K84
Agrobacterium vitis S4
Rhizobium etli CFN 42
Rhizobium etli CIAT 652
Rhizobium leguminosarum
Rhizobium leguminosarum bv. trifolii WSM2304
Rhizobium leguminosarum bv. trifolii WSM1325
Rhizobium sp. NGR234
Candidatus Liberibacter asiaticus
Brucella melitensis 16M
Brucella melitensis ATCC 23457
Brucella melitensis biovar Abortus
Brucella abortus 9-941
Brucella abortus S19
Brucella suis 1330
Brucella suis ATCC 23445
Brucella ovis
Brucella canis
Brucella microti
Ochrobactrum anthropi
Bradyrhizobium japonicum
Bradyrhizobium sp. ORS278
Bradyrhizobium sp. BTAi1
Rhodopseudomonas palustris CGA009
Rhodopseudomonas palustris HaA2
Rhodopseudomonas palustris BisB18
Rhodopseudomonas palustris BisB5
Rhodopseudomonas palustris BisA53
Rhodopseudomonas palustris TIE-1
Nitrobacter winogradskyi
Nitrobacter hamburgensis
Oligotropha carboxidovorans
Bartonella henselae
Bartonella quintana
Bartonella bacilliformis
Bartonella tribocorum
Bartonella grahamii
Xanthobacter autotrophicus
Azorhizobium caulinodans
Methylobacterium extorquens
Methylobacterium extorquens AM1
Methylobacterium extorquens DM4
Methylobacterium radiotolerans
Methylobacterium sp. 4-46
Methylobacterium populi
Methylobacterium chloromethanicum
Methylobacterium nodulans
Beijerinckia indica
Methylocella silvestris
Caulobacter crescentus CB15
Caulobacter crescentus NA1000
Caulobacter sp. K31
Phenylobacterium zucineum
Silicibacter pomeroyi
Silicibacter sp. TM1040
Rhodobacter sphaeroides 2.4.1
Rhodobacter sphaeroides ATCC 17029
Rhodobacter sphaeroides ATCC 17025
Rhodobacter sphaeroides KD131
Jannaschia sp. CCS1
Roseobacter denitrificans
Paracoccus denitrificans
Dinoroseobacter shibae
Maricaulis maris
Hyphomonas neptunium
Hirschia baltica
Zymomonas mobilis
Zymomonas mobilis subsp. mobilis NCIMB 11163
Novosphingobium aromaticivorans
Sphingomonas wittichii
Gluconobacter oxydans
Granulobacter bethesdensis
Acidiphilium cryptum JF-5
Gluconacetobacter diazotrophicus PAl 5 (Brazil)
Gluconacetobacter diazotrophicus PAl 5 (JGI)
Acetobacter pasteurianus
Rhodospirillum rubrum
Rhodospirillum centenum
Magnetospirillum magneticum
Azospirillum sp. B510
Magnetococcus sp. MC-1
Lactococcus lactis subsp. lactis KF147
Lactococcus lactis subsp. cremoris SK11
Lactococcus lactis subsp. cremoris MG1363
Clostridium acetobutylicum
Veillonella parvula
Acidaminococcus fermentans
Heliobacterium modesticaldum
Halothermothrix orenii
Mycobacterium tuberculosis H37Rv
Mycobacterium tuberculosis CDC1551
Mycobacterium tuberculosis H37Ra
Mycobacterium tuberculosis F11
Mycobacterium tuberculosis KZN 1435
Mycobacterium bovis AF2122/97
Mycobacterium bovis BCG Pasteur 1173P2
Mycobacterium bovis BCG Tokyo 172
Mycobacterium avium paratuberculosis
Mycobacterium avium 104
Mycobacterium smegmatis
Mycobacterium marinum M
Nocardia farcinica
Rhodococcus sp. RHA1
Rhodococcus opacus
Streptomyces coelicolor
Beutenbergia cavernae
Kribbella flavida
Thermobifida fusca
Thermomonospora curvata
Streptosporangium roseum
Nakamurella multipartita
Geodermatophilus obscurus
Saccharomonospora viridis
Actinosynnema mirum
Salinispora arenicola
Conexibacter woesei
Chlamydia trachomatis D/UW-3/CX (serovar D)
Chlamydia trachomatis A/HAR-13 (serovar A)
Chlamydia trachomatis 434/Bu
Chlamydia trachomatis L2b/UCH-1/proctitis
Chlamydia trachomatis B/Jali20/OT
Chlamydia muridarum
Chlamydophila pneumoniae CWL029
Chlamydophila pneumoniae AR39
Chlamydophila pneumoniae J138
Chlamydophila pneumoniae TW183
Chlamydophila caviae
Chlamydophila abortus
Chlamydophila felis
Candidatus Protochlamydia amoebophila
Leptospira interrogans serovar lai
Leptospira interrogans serovar Copenhageni
Leptospira borgpetersenii JB197
Leptospira borgpetersenii L550
Leptospira biflexa serovar Patoc Patoc 1 (Paris)
Leptospira biflexa serovar Patoc Patoc 1 (Ames)
Brachyspira hyodysenteriae
Acidobacteria bacterium
Acidobacterium capsulatum
Solibacter usitatus
Bacteroides thetaiotaomicron
Bacteroides fragilis YCH46
Bacteroides fragilis NCTC9343
Bacteroides vulgatus
Porphyromonas gingivalis W83
Porphyromonas gingivalis ATCC 33277
Parabacteroides distasonis
Candidatus Azobacteroides pseudotrichonymphae
Cytophaga hutchinsonii
Dyadobacter fermentans
Spirosoma linguale
Chitinophaga pinensis
Pedobacter heparinus
Gramella forsetii
Flavobacterium johnsoniae
Flavobacterium psychrophilum
Flavobacteriaceae bacterium
Capnocytophaga ochracea
Robiginitalea biformata
Blattabacterium sp. (Blattella germanica)
Candidatus Amoebophilus asiaticus
Fibrobacter succinogenes
Fusobacterium nucleatum
Leptotrichia buccalis
Sebaldella termitidis
Opitutus terrae
Methylacidiphilum infernorum
Akkermansia muciniphila
Gemmatimonas aurantiaca
Rhodopirellula baltica
Pirellula staleyi
Elusimicrobium minutum
Thermanaerovibrio acidaminovorans
Synechocystis sp. PCC6803
Synechococcus sp. WH8102
Synechococcus elongatus PCC6301
Synechococcus elongatus PCC7942
Synechococcus sp. CC9605
Synechococcus sp. CC9902
Synechococcus sp. CC9311
Synechococcus sp. RCC307
Synechococcus sp. WH7803
Synechococcus sp. PCC7002
Cyanobacteria Yellowstone A-Prime
Cyanobacteria Yellowstone B-Prime
Thermosynechococcus elongatus
Microcystis aeruginosa
Cyanothece sp. ATCC 51142
Cyanothece sp. PCC 8801
Cyanothece sp. PCC 7424
Cyanothece sp. PCC 7425
Cyanothece sp. PCC 8802
Cyanobacterium UCYN-A
Gloeobacter violaceus
Anabaena sp. PCC7120
Nostoc punctiforme
Anabaena variabilis
Prochlorococcus marinus SS120
Prochlorococcus marinus MED4
Prochlorococcus marinus MIT 9313
Prochlorococcus marinus NATL2A
Prochlorococcus marinus MIT9312
Prochlorococcus marinus AS9601
Prochlorococcus marinus MIT 9515
Prochlorococcus marinus MIT 9303
Prochlorococcus marinus MIT 9301
Prochlorococcus marinus MIT 9215
Prochlorococcus marinus MIT 9211
Prochlorococcus marinus NATL1A
Trichodesmium erythraeum
Acaryochloris marina
Chlorobaculum tepidum
Chlorobaculum parvum NCIB 8327
Chlorobium chlorochromatii
Chlorobium phaeobacteroides DSM 266
Chlorobium phaeobacteroides BS1
Chlorobium limicola
Chlorobium vibrioformis
Pelodictyon luteolum
Pelodictyon phaeoclathratiforme
Prosthecochloris aestuarii
Chloroherpeton thalassium
Roseiflexus sp. RS-1
Roseiflexus castenholzii DSM13941
Chloroflexus aurantiacus
Chloroflexus aggregans
Chloroflexus sp. Y-400-fl
Herpetosiphon aurantiacus
Thermomicrobium roseum
Sphaerobacter thermophilus
Aquifex aeolicus
Hydrogenobaculum sp. Y04AAS1
Hydrogenobacter thermophilus
Sulfurihydrogenibium sp. YO3AOP1
Sulfurihydrogenibium azorense
Persephonella marina
Dictyoglomus thermophilum
Dictyoglomus turgidum
Thermodesulfovibrio yellowstonii
Thermobaculum terrenum
Lipopolysaccharide biosynthesis - Reference pathway (KO)
Lipopolysaccharide biosynthesis - Reference pathway (KO)
