Chlorocyclohexane and chlorobenzene degradation - Reference pathway
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Reference pathway
Reference pathway (KO)
Reference pathway (EC)
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Escherichia coli K-12 MG1655
Escherichia coli K-12 W3110
Escherichia coli K-12 DH10B
Escherichia coli K-12 MC4100(MuLac) BW2952
Escherichia coli O157:H7 EDL933 (EHEC)
Escherichia coli O157:H7 Sakai (EHEC)
Escherichia coli O157:H7 EC4115 (EHEC)
Escherichia coli O157:H7 TW14359 (EHEC)
Escherichia coli O26:H11 11368 (EHEC)
Escherichia coli O111:H- 11128 (EHEC)
Escherichia coli O103:H2 12009 (EHEC)
Escherichia coli O127:H6 E2348/69 (EPEC)
Escherichia coli O55:H7 CB9615 (EPEC)
Escherichia coli O6:K2:H1 CFT073 (UPEC)
Escherichia coli O6:K15:H31 536 (UPEC)
Escherichia coli O18:K1:H7 UTI89 (UPEC)
Escherichia coli O1:K1:H7 (APEC)
Escherichia coli O9 HS (commensal)
Escherichia coli O139:H28 E24377A (ETEC)
Escherichia coli SMS-3-5 (environmental)
Escherichia coli O152:H28 SE11 (commensal)
Escherichia coli O8 IAI1 (commensal)
Escherichia coli O81 ED1a (commensal)
Escherichia coli 55989 (EAEC)
Escherichia coli O7:K1 IAI39 (ExPEC)
Escherichia coli O17:K52:H18 UMN026 (ExPEC)
Escherichia coli O45:K1:H7 S88 (ExPEC)
Escherichia coli C ATCC 8739
Escherichia coli B REL606
Escherichia coli BL21-Gold(DE3)pLysS AG
Escherichia fergusonii
Salmonella enterica subsp. enterica serovar Typhi CT18
Salmonella enterica subsp. enterica serovar Typhi Ty2
Salmonella enterica subsp. enterica serovar Typhimurium LT2
Salmonella enterica subsp. enterica serovar Paratyphi A ATCC9150
Salmonella enterica subsp. enterica serovar Paratyphi A AKU12601
Salmonella enterica subsp. enterica serovar Paratyphi B
Salmonella enterica subsp. enterica serovar Paratyphi C
Salmonella enterica subsp. enterica serovar Choleraesuis
Salmonella enterica subsp. enterica serovar Heidelberg
Salmonella enterica subsp. enterica serovar Newport
Salmonella enterica subsp. enterica serovar Schwarzengrund
Salmonella enterica subsp. enterica serovar Agona
Salmonella enterica subsp. enterica serovar Gallinarum
Salmonella enterica subsp. enterica serovar Enteritidis
Salmonella enterica subsp. arizonae
Salmonella bongori
Yersinia pestis CO92 (biovar Orientalis)
Yersinia pestis KIM 10 (biovar Mediaevalis)
Yersinia pestis Antiqua (biovar Antiqua)
Yersinia pestis Nepal516 (biovar Antiqua)
Yersinia pestis 91001 (biovar Microtus)
Yersinia pestis Pestoides F
Yersinia pestis Angola
Yersinia pestis Z176003
Yersinia pseudotuberculosis IP32953 (serotype I)
Yersinia pseudotuberculosis IP31758 (serotype O:1b)
Yersinia pseudotuberculosis YPIII
Yersinia pseudotuberculosis PB1/+
Yersinia enterocolitica subsp. enterocolitica 8081
Yersinia enterocolitica subsp. palearctica 105.5R(r)
Shigella flexneri 301 (serotype 2a)
Shigella flexneri 2457T (serotype 2a)
Shigella flexneri 8401 (serotype 5b)
Shigella sonnei
Shigella boydii Sb227
Shigella boydii CDC 3083-94
Shigella dysenteriae
Pectobacterium atrosepticum
Pectobacterium carotovorum
Pectobacterium wasabiae
Erwinia tasmaniensis
Erwinia pyrifoliae
Erwinia amylovora CFBP1430
Erwinia amylovora ATCC 49946
Erwinia billingiae
Enterobacter sp. 638
Enterobacter cloacae subsp. cloacae ATCC 13047
Enterobacter cloacae SCF1
Enterobacter cloacae EcWSU1
Enterobacter asburiae
Enterobacter aerogenes
Cronobacter sakazakii
Cronobacter turicensis
Klebsiella pneumoniae
Klebsiella pneumoniae 342
Klebsiella pneumoniae NTUH-K2044
Klebsiella variicola
Citrobacter koseri ATCC BAA-895
Citrobacter rodentium
Serratia proteamaculans
Serratia sp. AS12
Serratia sp. AS9
Dickeya dadantii Ech703
Dickeya dadantii Ech586
Dickeya dadantii 3937
Dickeya zeae
Pantoea ananatis
Pantoea vagans
Pantoea sp. At-9b
Rahnella sp. Y9602
Haemophilus somnus 129PT
Xylella fastidiosa 9a5c
Xylella fastidiosa Temecula1
Xylella fastidiosa M12
Xylella fastidiosa M23
Xanthomonas campestris pv. campestris ATCC 33913
Xanthomonas campestris pv. campestris 8004
Xanthomonas campestris pv. campestris B100
Xanthomonas campestris pv. vesicatoria
Xanthomonas axonopodis pv. citri 306
Xanthomonas axonopodis pv. citrumelo F1
Xanthomonas oryzae KACC10331
Xanthomonas oryzae MAFF311018
Xanthomonas oryzae PXO99A
Xanthomonas albilineans
Stenotrophomonas maltophilia K279a
Stenotrophomonas maltophilia R551-3
Pseudoxanthomonas suwonensis
Pseudoxanthomonas spadix
Vibrio vulnificus CMCP6
Vibrio vulnificus YJ016
Vibrio vulnificus MO6-24/O
Vibrio parahaemolyticus
Vibrio harveyi
Vibrio sp. Ex25
Photobacterium profundum
Pseudomonas aeruginosa PAO1
Pseudomonas aeruginosa UCBPP-PA14
Pseudomonas aeruginosa PA7
Pseudomonas aeruginosa LESB58
Pseudomonas putida KT2440
Pseudomonas putida F1
Pseudomonas putida GB-1
Pseudomonas putida W619
Pseudomonas putida S16
Pseudomonas syringae pv. tomato DC3000
Pseudomonas syringae pv. syringae B728a
Pseudomonas syringae pv. phaseolicola 1448A
Pseudomonas fluorescens Pf-5
Pseudomonas fluorescens Pf0-1
Pseudomonas fluorescens SBW25
Pseudomonas entomophila
Pseudomonas mendocina NK-01
Pseudomonas stutzeri
Pseudomonas stutzeri ATCC 17588
Pseudomonas brassicacearum
Pseudomonas fulva
Cellvibrio japonicus
Cellvibrio gilvus
Azotobacter vinelandii
Psychrobacter arcticum
Psychrobacter cryohalolentis
Acinetobacter sp. ADP1
Acinetobacter sp. DR1
Acinetobacter baumannii ATCC 17978
Acinetobacter baumannii SDF
Acinetobacter baumannii AYE
Acinetobacter baumannii ACICU
Acinetobacter baumannii AB0057
Acinetobacter baumannii AB307-0294
Shewanella oneidensis
Shewanella denitrificans
Shewanella frigidimarina
Shewanella amazonensis
Shewanella baltica OS155
Shewanella baltica OS185
Shewanella baltica OS195
Shewanella baltica OS223
Shewanella loihica
Shewanella putrefaciens
Shewanella sediminis
Shewanella pealeana
Shewanella sp. MR-4
Shewanella sp. MR-7
Shewanella sp. ANA-3
Shewanella sp. W3-18-1
Shewanella halifaxensis
Shewanella woodyi ATCC 51908
Shewanella piezotolerans WP3
Shewanella violacea
Colwellia psychrerythraea
Pseudoalteromonas haloplanktis
Pseudoalteromonas atlantica
Pseudoalteromonas sp. SM9913
Saccharophagus degradans
Marinobacter aquaeolei
Alteromonas macleodii
Alteromonas sp. SN2
Glaciecola sp. 4H-3-7+YE-5
Glaciecola nitratireducens
Psychromonas ingrahamii
Coxiella burnetii RSA 493
Coxiella burnetii RSA 331
Coxiella burnetii Dugway 5J108-111
Coxiella burnetii CbuG_Q212
Coxiella burnetii CbuK_Q154
Legionella pneumophila Philadelphia 1
Legionella pneumophila Lens
Legionella pneumophila Paris
Legionella pneumophila Corby
Legionella pneumophila 2300/99 Alcoy
Francisella tularensis subsp. tularensis WY96-3418
Thioalkalivibrio sp. HL-EbGR7
Thioalkalivibrio sp. K90mix
Hahella chejuensis
Chromohalobacter salexigens
Halomonas elongata
Alcanivorax borkumensis
Marinomonas sp. MWYL1
Marinomonas mediterranea
Marinomonas posidonica
Tolumonas auensis
Acidithiobacillus ferrooxidans ATCC 53993
Acidithiobacillus ferrooxidans ATCC 23270
Acidithiobacillus caldus
Acidithiobacillus ferrivorans
Gamma proteobacterium HdN1
Chromobacterium violaceum
Pseudogulbenkiania sp. NH8B
Ralstonia solanacearum GMI1000
Ralstonia solanacearum CFBP2957
Ralstonia solanacearum PSI07
Ralstonia pickettii 12J
Ralstonia pickettii 12D
Ralstonia eutropha JMP134
Ralstonia eutropha H16
Cupriavidus metallidurans
Cupriavidus taiwanensis
Cupriavidus necator
Burkholderia mallei ATCC 23344
Burkholderia mallei SAVP1
Burkholderia mallei NCTC 10229
Burkholderia mallei NCTC 10247
Burkholderia pseudomallei K96243
Burkholderia pseudomallei 1710b
Burkholderia pseudomallei 1106a
Burkholderia pseudomallei 668
Burkholderia pseudomallei MSHR346
Burkholderia thailandensis
Burkholderia vietnamiensis
Burkholderia sp. 383
Burkholderia cenocepacia AU1054
Burkholderia cenocepacia HI2424
Burkholderia cenocepacia MC0-3
Burkholderia cenocepacia J2315
Burkholderia ambifaria AMMD
Burkholderia ambifaria MC40-6
Burkholderia multivorans ATCC 17616 (JGI)
Burkholderia multivorans ATCC 17616 (Tohoku)
Burkholderia xenovorans
Burkholderia phymatum
Burkholderia phytofirmans
Burkholderia glumae
Burkholderia sp. CCGE1001
Burkholderia sp. CCGE1002
Burkholderia sp. CCGE1003
Burkholderia rhizoxinica
Burkholderia gladioli
Stenotrophomonas maltophilia JV3
Polynucleobacter sp. QLW-P1DMWA-1
Bordetella pertussis
Bordetella parapertussis
Bordetella bronchiseptica
Bordetella petrii
Bordetella avium
Achromobacter xylosoxidans
Pusillimonas sp. T7-7
Rhodoferax ferrireducens
Polaromonas sp. JS666
Polaromonas naphthalenivorans
Acidovorax avenae
Acidovorax sp. JS42
Acidovorax ebreus
Acidovorax avenae subsp. avenae ATCC 19860
Verminephrobacter eiseniae
Delftia acidovorans
Delftia sp. Cs1-4
Variovorax paradoxus S110
Variovorax paradoxus EPS
Comamonas testosteroni
Alicycliphilus denitrificans BC
Alicycliphilus denitrificans K601
Ramlibacter tataouinensis
Methylibium petroleiphilum
Herminiimonas arsenicoxydans
Minibacterium massiliensis
Herbaspirillum seropedicae
Collimonas fungivorans
Leptothrix cholodnii
Thiomonas intermedia
Azoarcus sp. BH72
Dechloromonas aromatica
Thauera sp. MZ1T
Methylobacillus flagellatus
Methylotenera mobilis
Methylotenera sp. 301
Methylovorus glucosetrophus SIP3-4
Methylovorus sp. MP688
Accumulibacter phosphatis
Geobacter uraniumreducens
Geobacter lovleyi
Geobacter bemidjiensis
Geobacter sp. FRC-32
Geobacter sp. M21
Geobacter sp. M18
Pelobacter propionicus
Desulfotalea psychrophila
Desulfobulbus propionicus
Candidatus Desulfococcus oleovorans
Desulfatibacillum alkenivorans
Desulfobacterium autotrophicum
Anaeromyxobacter sp. Fw109-5
Myxococcus xanthus
Myxococcus fulvus
Stigmatella aurantiaca
Sorangium cellulosum
Haliangium ochraceum
Candidatus Pelagibacter sp. IMCC9063
Mesorhizobium loti
Mesorhizobium ciceri
Mesorhizobium opportunistum
Mesorhizobium sp. BNC1
Parvibaculum lavamentivorans
Sinorhizobium meliloti 1021
Sinorhizobium meliloti AK83
Sinorhizobium medicae
Sinorhizobium fredii NGR234
Agrobacterium tumefaciens C58
Agrobacterium radiobacter K84
Agrobacterium vitis S4
Agrobacterium sp. H13-3
Rhizobium etli CFN 42
Rhizobium etli CIAT 652
Rhizobium leguminosarum
Rhizobium leguminosarum bv. trifolii WSM2304
Rhizobium leguminosarum bv. trifolii WSM1325
Brucella melitensis bv. 1 16M
Brucella melitensis biovar Abortus
Brucella abortus 9-941
Brucella abortus S19
Brucella suis ATCC 23445
Brucella microti
Ochrobactrum anthropi
Bradyrhizobium japonicum
Bradyrhizobium sp. ORS 278
Bradyrhizobium sp. BTAi1
Rhodopseudomonas palustris CGA009
Rhodopseudomonas palustris HaA2
Rhodopseudomonas palustris BisB18
Rhodopseudomonas palustris BisB5
Rhodopseudomonas palustris BisA53
Rhodopseudomonas palustris TIE-1
Rhodopseudomonas palustris DX-1
Oligotropha carboxidovorans OM5 (Mississippi)
Oligotropha carboxidovorans OM5 (Goettingen)
Xanthobacter autotrophicus
Azorhizobium caulinodans
Starkeya novella
Methylobacterium extorquens
Methylobacterium extorquens AM1
Methylobacterium extorquens DM4
Methylobacterium radiotolerans
Methylobacterium sp. 4-46
Methylobacterium populi
Methylobacterium chloromethanicum
Methylobacterium nodulans
Beijerinckia indica
Methylocella silvestris
Hyphomicrobium denitrificans
Hyphomicrobium sp. MC1
Pelagibacterium halotolerans
Caulobacter crescentus CB15
Caulobacter crescentus NA1000
Caulobacter sp. K31
Caulobacter segnis
Phenylobacterium zucineum
Brevundimonas subvibrioides
Asticcacaulis excentricus
Silicibacter pomeroyi
Ruegeria sp. TM1040
Rhodobacter sphaeroides 2.4.1
Jannaschia sp. CCS1
Roseobacter denitrificans
Roseobacter litoralis Och 149
Paracoccus denitrificans
Dinoroseobacter shibae
Maricaulis maris
Hyphomonas neptunium
Hirschia baltica
Zymomonas mobilis
Zymomonas mobilis subsp. mobilis NCIMB 11163
Zymomonas mobilis subsp. pomaceae ATCC 29192
Novosphingobium aromaticivorans
Novosphingobium sp. PP1Y
Sphingopyxis alaskensis
Sphingomonas wittichii
Sphingobium japonicum
Sphingobium chlorophenolicum
Sphingobium sp. SYK-6
Erythrobacter litoralis
Gluconobacter oxydans
Granulibacter bethesdensis
Acidiphilium cryptum JF-5
Acidiphilium multivorum
Gluconacetobacter diazotrophicus PAl 5 (Brazil)
Gluconacetobacter diazotrophicus PAl 5 (JGI)
Gluconacetobacter xylinus
Acetobacter pasteurianus
Rhodospirillum centenum
Magnetospirillum magneticum
Azospirillum sp. B510
Parvularcula bermudensis
Candidatus Puniceispirillum marinum
Polymorphum gilvum
Micavibrio aeruginosavorus
Bacillus anthracis Ames
Bacillus anthracis Sterne
Bacillus cereus ATCC 10987
Bacillus cereus ZK
Bacillus thuringiensis 97-27
Bacillus thuringiensis Al Hakam
Bacillus clausii
Staphylococcus aureus USA300_FPR3757 (CA-MRSA)
Staphylococcus aureus RF122
Staphylococcus epidermidis ATCC 12228
Staphylococcus epidermidis RP62A
Staphylococcus saprophyticus
Staphylococcus carnosus
Staphylococcus lugdunensis
Paenibacillus sp. JDR-2
Paenibacillus mucilaginosus
Alicyclobacillus acidocaldarius
Kyrpidia tusciae
Carnobacterium sp. 17-4
Desulfotomaculum ruminis
Sulfobacillus acidophilus
Mycobacterium tuberculosis H37Rv
Mycobacterium tuberculosis CDC1551
Mycobacterium tuberculosis H37Ra
Mycobacterium tuberculosis F11
Mycobacterium tuberculosis KZN 1435
Mycobacterium bovis AF2122/97
Mycobacterium bovis BCG Pasteur 1173P2
Mycobacterium bovis BCG Tokyo 172
Mycobacterium africanum
Mycobacterium canettii
Mycobacterium leprae TN
Mycobacterium leprae Br4923
Mycobacterium avium paratuberculosis
Mycobacterium avium 104
Mycobacterium smegmatis
Mycobacterium ulcerans
Mycobacterium vanbaalenii
Mycobacterium gilvum
Mycobacterium abscessus ATCC 19977
Mycobacterium sp. MCS
Mycobacterium sp. KMS
Mycobacterium sp. JLS
Mycobacterium sp. Spyr1
Mycobacterium sp. JDM601
Mycobacterium marinum M
Amycolicicoccus subflavus
Corynebacterium glutamicum ATCC 13032 (Kyowa Hakko)
Corynebacterium glutamicum ATCC 13032 (Bielefeld)
Corynebacterium glutamicum R
Corynebacterium efficiens
Corynebacterium aurimucosum
Nocardia farcinica
Rhodococcus sp. RHA1
Rhodococcus erythropolis
Rhodococcus opacus
Rhodococcus equi
Gordonia bronchialis
Tsukamurella paurometabola
Segniliparus rotundus
Streptomyces coelicolor
Streptomyces avermitilis
Streptomyces scabiei
Streptomyces sp. SirexAA-E
Streptomyces violaceusniger
Streptomyces cattleya
Kitasatospora setae
Clavibacter michiganensis subsp. michiganensis
Clavibacter michiganensis subsp. sepedonicus
Microbacterium testaceum
Arthrobacter sp. FB24
Arthrobacter aurescens
Arthrobacter chlorophenolicus
Arthrobacter arilaitensis
Arthrobacter phenanthrenivorans
Renibacterium salmoninarum
Kocuria rhizophila
Micrococcus luteus
Beutenbergia cavernae
Brachybacterium faecium
Xylanimonas cellulosilytica
Isoptericola variabilis
Cellulomonas fimi
Intrasporangium calvum
Microlunatus phosphovorus
Nocardioides sp. JS614
Kribbella flavida
Thermobifida fusca
Nocardiopsis dassonvillei
Thermomonospora curvata
Streptosporangium roseum
Frankia sp. CcI3
Frankia sp. EAN1pec
Frankia sp. EuI1c
Frankia alni
Acidothermus cellulolyticus
Nakamurella multipartita
Geodermatophilus obscurus
Kineococcus radiotolerans
Saccharopolyspora erythraea
Saccharomonospora viridis
Thermobispora bispora
Amycolatopsis mediterranei
Pseudonocardia dioxanivorans
Actinosynnema mirum
Salinispora tropica
Salinispora arenicola
Micromonospora aurantiaca
Micromonospora sp. L5
Verrucosispora maris
Catenulispora acidiphila
Stackebrandtia nassauensis
Rubrobacter xylanophilus
Conexibacter woesei
Acidimicrobium ferrooxidans DSM 10331
Treponema primitia
Candidatus Koribacter versatilis
Acidobacterium capsulatum
Granulicella tundricola
Terriglobus saanensis
Candidatus Solibacter usitatus
Candidatus Chloracidobacterium thermophilum B
Salinibacter ruber
Salinibacter ruber
Rhodothermus marinus DSM 4252
Rhodothermus marinus SG0.5JP17-172
Chitinophaga pinensis
Pedobacter heparinus
Sphingobacterium sp. 21
Haliscomenobacter hydrossis
Cyclobacterium marinum
Cytophaga hutchinsonii
Dyadobacter fermentans
Spirosoma linguale
Leadbetterella byssophila
Runella slithyformis
Marivirga tractuosa
Flavobacterium johnsoniae
Robiginitalea biformata
Maribacter sp. HTCC2170
Cellulophaga algicola
Krokinobacter sp. 4H-3-7-5
Muricauda ruestringensis
Opitutus terrae
Coraliomargarita akajimensis
Methylacidiphilum infernorum
Gemmatimonas aurantiaca
Rhodopirellula baltica
Pirellula staleyi
Planctomyces limnophilus
Planctomyces brasiliensis
Isosphaera pallida
Synechocystis sp. PCC6803
Synechococcus sp. WH8102
Synechococcus elongatus PCC6301
Synechococcus elongatus PCC7942
Synechococcus sp. CC9605
Synechococcus sp. CC9311
Synechococcus sp. RCC307
Synechococcus sp. WH7803
Synechococcus sp. PCC7002
Thermosynechococcus elongatus
Microcystis aeruginosa
Cyanothece sp. ATCC 51142
Cyanothece sp. PCC 8801
Cyanothece sp. PCC 7424
Cyanothece sp. PCC 7425
Cyanothece sp. PCC 8802
Cyanothece sp. PCC 7822
Gloeobacter violaceus
Anabaena sp. PCC7120
Nostoc punctiforme
Anabaena variabilis
Prochlorococcus marinus MIT 9313
Prochlorococcus marinus MIT9312
Prochlorococcus marinus MIT 9303
Prochlorococcus marinus MIT 9301
Trichodesmium erythraeum
Acaryochloris marina
Roseiflexus sp. RS-1
Roseiflexus castenholzii DSM13941
Chloroflexus aurantiacus
Chloroflexus aggregans
Chloroflexus sp. Y-400-fl
Herpetosiphon aurantiacus
Thermomicrobium roseum
Sphaerobacter thermophilus
Deinococcus deserti
Truepera radiovictrix
Thermus thermophilus HB27
Meiothermus silvanus
Marinithermus hydrothermalis
Aquifex aeolicus
Hydrogenobaculum sp. Y04AAS1
Hydrogenobaculum sp. 3684
Hydrogenobaculum sp. SHO
Hydrogenobacter thermophilus
Thermocrinis albus
Candidatus Nitrospira defluvii
Thermobaculum terrenum
Flexistipes sinusarabici
Methanosarcina acetivorans
Methanosarcina mazei
Methanoculleus marisnigri
Haloterrigena turkmenica
Thermoplasma acidophilum
Picrophilus torridus
Sulfolobus solfataricus
Sulfolobus tokodaii
Sulfolobus acidocaldarius
Sulfolobus islandicus L.S.2.15
Sulfolobus islandicus M.14.25
Sulfolobus islandicus M.16.27
Sulfolobus islandicus M.16.4
Sulfolobus islandicus Y.G.57.14
Sulfolobus islandicus Y.N.15.51
Sulfolobus islandicus L.D.8.5
Metallosphaera sedula
Metallosphaera cuprina
Caldivirga maquilingensis
184%
150%
122%
100%
82%
67%
55%
Chlorocyclohexane and chlorobenzene degradation - Reference pathway
Chlorocyclohexane and chlorobenzene degradation - Reference pathway
