Carotenoid biosynthesis - Reference pathway
[
Pathway menu
|
Organism menu
|
Pathway entry
|
User data mapping
]
Reference pathway
Reference pathway (KO)
Reference pathway (EC)
Reference pathway (Reaction)
-----< Set personalized menu >-----
-----< Sort below by alphabet >-----
Arabidopsis thaliana (thale cress)
Arabidopsis lyrata (lyrate rockcress)
Populus trichocarpa (black cottonwood)
Ricinus communis (castor bean)
Vitis vinifera (wine grape)
Oryza sativa japonica (Japanese rice)
Sorghum bicolor (sorghum)
Zea mays (maize)
Selaginella moellendorffii
Physcomitrella patens subsp. patens
Chlamydomonas reinhardtii
Volvox carteri f. nagariensis
Ostreococcus lucimarinus
Ostreococcus tauri
Cyanidioschyzon merolae
Photorhabdus luminescens
Cronobacter sakazakii
Cronobacter turicensis
Pantoea ananatis
Pantoea vagans
Pantoea sp. At-9b
Vibrio harveyi
Pseudomonas putida KT2440
Pseudomonas putida F1
Pseudomonas putida GB-1
Pseudomonas putida W619
Pseudomonas putida S16
Pseudomonas entomophila
Pseudomonas stutzeri
Pseudomonas stutzeri ATCC 17588
Pseudomonas fulva
Glaciecola nitratireducens
Methylomonas methanica
Thioalkalimicrobium cyclicum
Nitrosococcus oceani
Nitrosococcus halophilus
Nitrosococcus watsonii
Allochromatium vinosum
Alkalilimnicola ehrlichei
Halorhodospira halophila
Thioalkalivibrio sp. HL-EbGR7
Thioalkalivibrio sp. K90mix
Halothiobacillus neapolitanus
Gamma proteobacterium HdN1
Neisseria meningitidis Z2491 (serogroup A)
Neisseria meningitidis MC58 (serogroup B)
Neisseria meningitidis FAM18 (serogroup C)
Neisseria meningitidis 053442 (serogroup C)
Neisseria meningitidis alpha14
Neisseria gonorrhoeae FA 1090
Neisseria gonorrhoeae NCCP11945
Neisseria lactamica
Chromobacterium violaceum
Laribacter hongkongensis
Pseudogulbenkiania sp. NH8B
Ralstonia solanacearum GMI1000
Ralstonia solanacearum CFBP2957
Ralstonia solanacearum PSI07
Ralstonia pickettii 12J
Ralstonia pickettii 12D
Ralstonia eutropha JMP134
Ralstonia eutropha H16
Cupriavidus metallidurans
Cupriavidus taiwanensis
Cupriavidus necator
Burkholderia mallei ATCC 23344
Burkholderia mallei SAVP1
Burkholderia mallei NCTC 10229
Burkholderia mallei NCTC 10247
Burkholderia pseudomallei K96243
Burkholderia pseudomallei 1710b
Burkholderia pseudomallei 1106a
Burkholderia pseudomallei 668
Burkholderia pseudomallei MSHR346
Burkholderia thailandensis
Burkholderia vietnamiensis
Burkholderia sp. 383
Burkholderia cenocepacia AU1054
Burkholderia cenocepacia HI2424
Burkholderia cenocepacia MC0-3
Burkholderia cenocepacia J2315
Burkholderia ambifaria AMMD
Burkholderia ambifaria MC40-6
Burkholderia multivorans ATCC 17616 (JGI)
Burkholderia multivorans ATCC 17616 (Tohoku)
Burkholderia xenovorans
Burkholderia phymatum
Burkholderia phytofirmans
Burkholderia glumae
Burkholderia sp. CCGE1001
Burkholderia sp. CCGE1002
Burkholderia sp. CCGE1003
Burkholderia rhizoxinica
Burkholderia gladioli
Bordetella pertussis
Bordetella parapertussis
Bordetella bronchiseptica
Bordetella petrii
Bordetella avium
Achromobacter xylosoxidans
Taylorella equigenitalis
Taylorella asinigenitalis
Pusillimonas sp. T7-7
Rhodoferax ferrireducens
Polaromonas sp. JS666
Polaromonas naphthalenivorans
Acidovorax avenae
Acidovorax sp. JS42
Acidovorax ebreus
Acidovorax avenae subsp. avenae ATCC 19860
Verminephrobacter eiseniae
Delftia acidovorans
Delftia sp. Cs1-4
Variovorax paradoxus S110
Variovorax paradoxus EPS
Comamonas testosteroni
Alicycliphilus denitrificans BC
Alicycliphilus denitrificans K601
Ramlibacter tataouinensis
Methylibium petroleiphilum
Herminiimonas arsenicoxydans
Minibacterium massiliensis
Herbaspirillum seropedicae
Collimonas fungivorans
Leptothrix cholodnii
Thiomonas intermedia
Nitrosospira multiformis
Aromatoleum aromaticum EbN1
Azoarcus sp. BH72
Dechloromonas aromatica
Thauera sp. MZ1T
Thiobacillus denitrificans
Methylobacillus flagellatus
Methylotenera mobilis
Methylotenera sp. 301
Methylovorus glucosetrophus SIP3-4
Methylovorus sp. MP688
Accumulibacter phosphatis
Sideroxydans lithotrophicus
Gallionella capsiferriformans
Bdellovibrio bacteriovorus
Anaeromyxobacter sp. Fw109-5
Myxococcus xanthus
Myxococcus fulvus
Stigmatella aurantiaca
Sorangium cellulosum
Haliangium ochraceum
Candidatus Pelagibacter ubique
Candidatus Pelagibacter sp. IMCC9063
Mesorhizobium loti
Mesorhizobium ciceri
Mesorhizobium opportunistum
Mesorhizobium sp. BNC1
Parvibaculum lavamentivorans
Sinorhizobium meliloti 1021
Sinorhizobium meliloti AK83
Sinorhizobium medicae
Sinorhizobium fredii NGR234
Agrobacterium tumefaciens C58
Agrobacterium radiobacter K84
Agrobacterium vitis S4
Agrobacterium sp. H13-3
Rhizobium etli CFN 42
Rhizobium etli CIAT 652
Rhizobium leguminosarum
Rhizobium leguminosarum bv. trifolii WSM2304
Rhizobium leguminosarum bv. trifolii WSM1325
Candidatus Liberibacter asiaticus
Candidatus Liberibacter solanacearum
Brucella melitensis bv. 1 16M
Brucella melitensis ATCC 23457
Brucella melitensis biovar Abortus
Brucella abortus 9-941
Brucella abortus S19
Brucella suis 1330
Brucella suis ATCC 23445
Brucella ovis
Brucella canis
Brucella microti
Brucella pinnipedialis
Ochrobactrum anthropi
Bradyrhizobium japonicum
Bradyrhizobium sp. ORS 278
Bradyrhizobium sp. BTAi1
Rhodopseudomonas palustris CGA009
Rhodopseudomonas palustris HaA2
Rhodopseudomonas palustris BisB18
Rhodopseudomonas palustris BisB5
Rhodopseudomonas palustris BisA53
Rhodopseudomonas palustris TIE-1
Rhodopseudomonas palustris DX-1
Nitrobacter winogradskyi
Nitrobacter hamburgensis
Oligotropha carboxidovorans OM5 (Mississippi)
Oligotropha carboxidovorans OM5 (Goettingen)
Bartonella henselae
Bartonella quintana
Bartonella bacilliformis
Bartonella tribocorum
Bartonella grahamii
Bartonella clarridgeiae
Xanthobacter autotrophicus
Azorhizobium caulinodans
Starkeya novella
Methylobacterium extorquens
Methylobacterium extorquens AM1
Methylobacterium extorquens DM4
Methylobacterium radiotolerans
Methylobacterium sp. 4-46
Methylobacterium populi
Methylobacterium chloromethanicum
Methylobacterium nodulans
Beijerinckia indica
Methylocella silvestris
Hyphomicrobium denitrificans
Hyphomicrobium sp. MC1
Rhodomicrobium vannielii
Pelagibacterium halotolerans
Caulobacter crescentus NA1000
Caulobacter sp. K31
Caulobacter segnis
Phenylobacterium zucineum
Brevundimonas subvibrioides
Asticcacaulis excentricus
Rhodobacter sphaeroides 2.4.1
Rhodobacter sphaeroides ATCC 17029
Rhodobacter sphaeroides ATCC 17025
Rhodobacter sphaeroides KD131
Rhodobacter capsulatus
Jannaschia sp. CCS1
Roseobacter denitrificans
Roseobacter litoralis Och 149
Dinoroseobacter shibae
Hirschia baltica
Zymomonas mobilis
Zymomonas mobilis subsp. mobilis NCIMB 11163
Zymomonas mobilis subsp. pomaceae ATCC 29192
Novosphingobium aromaticivorans
Novosphingobium sp. PP1Y
Sphingopyxis alaskensis
Sphingomonas wittichii
Sphingobium japonicum
Sphingobium chlorophenolicum
Sphingobium sp. SYK-6
Erythrobacter litoralis
Gluconobacter oxydans
Granulibacter bethesdensis
Acidiphilium cryptum JF-5
Acidiphilium multivorum
Gluconacetobacter diazotrophicus PAl 5 (Brazil)
Gluconacetobacter diazotrophicus PAl 5 (JGI)
Gluconacetobacter xylinus
Acetobacter pasteurianus
Rhodospirillum rubrum
Rhodospirillum centenum
Magnetospirillum magneticum
Azospirillum sp. B510
Parvularcula bermudensis
Candidatus Puniceispirillum marinum
Polymorphum gilvum
Micavibrio aeruginosavorus
Magnetococcus sp. MC-1
Bacillus subtilis
Bacillus subtilis subsp. spizizenii W23
Bacillus subtilis subsp. spizizenii TU-B-10
Bacillus subtilis BSn5
Bacillus amyloliquefaciens FZB42
Bacillus amyloliquefaciens DSM 7
Bacillus atrophaeus
Bacillus pumilus
Bacillus pseudofirmus
Bacillus megaterium QM B1551
Bacillus megaterium DSM 319
Bacillus selenitireducens
Bacillus cellulosilyticus
Oceanobacillus iheyensis
Anoxybacillus flavithermus
Staphylococcus aureus N315 (MRSA/VSSA)
Staphylococcus aureus Mu50 (MRSA/VISA)
Staphylococcus aureus Mu3 (MRSA/hetero-VISA)
Staphylococcus aureus JH1 (MRSA/VSSA)
Staphylococcus aureus JH9 (MRSA/VRSA)
Staphylococcus aureus MW2 (CA-MRSA)
Staphylococcus aureus MSSA476 (MSSA)
Staphylococcus aureus MRSA252 (MRSA)
Staphylococcus aureus COL (MRSA)
Staphylococcus aureus USA300_TCH1516 (CA-MSSA)
Staphylococcus aureus USA300_FPR3757 (CA-MRSA)
Staphylococcus aureus NCTC8325
Staphylococcus aureus Newman
Staphylococcus aureus ED98
Staphylococcus aureus RF122
Staphylococcus haemolyticus
Staphylococcus carnosus
Staphylococcus lugdunensis
Listeria monocytogenes HCC23
Listeria monocytogenes Clip81459
Listeria monocytogenes 08-5578
Listeria monocytogenes 08-5923
Listeria welshimeri SLCC5334
Listeria seeligeri
Listeria ivanovii
Exiguobacterium sibiricum
Exiguobacterium sp. AT1b
Paenibacillus mucilaginosus
Alicyclobacillus acidocaldarius
Lactobacillus plantarum WCFS1
Lactobacillus plantarum JDM1
Lactobacillus plantarum subsp. plantarum ST-III
Lactobacillus fermentum
Tetragenococcus halophilus
Oenococcus oeni
Leuconostoc mesenteroides
Leuconostoc citreum
Leuconostoc sp. C2
Carnobacterium sp. 17-4
Heliobacterium modesticaldum
Eubacterium limosum
Clostridium lentocellum
Natranaerobius thermophilus
Halothermothrix orenii
Acholeplasma laidlawii
Mycobacterium tuberculosis H37Rv
Mycobacterium tuberculosis CDC1551
Mycobacterium tuberculosis H37Ra
Mycobacterium tuberculosis F11
Mycobacterium tuberculosis KZN 1435
Mycobacterium bovis AF2122/97
Mycobacterium bovis BCG Pasteur 1173P2
Mycobacterium bovis BCG Tokyo 172
Mycobacterium africanum
Mycobacterium canettii
Mycobacterium avium paratuberculosis
Mycobacterium avium 104
Mycobacterium smegmatis
Mycobacterium ulcerans
Mycobacterium vanbaalenii
Mycobacterium gilvum
Mycobacterium sp. MCS
Mycobacterium sp. KMS
Mycobacterium sp. JLS
Mycobacterium sp. Spyr1
Mycobacterium marinum M
Amycolicicoccus subflavus
Corynebacterium glutamicum R
Corynebacterium urealyticum
Corynebacterium kroppenstedtii
Corynebacterium resistens
Corynebacterium variabile
Nocardia farcinica
Rhodococcus sp. RHA1
Rhodococcus erythropolis
Rhodococcus opacus
Rhodococcus equi
Gordonia bronchialis
Tsukamurella paurometabola
Streptomyces coelicolor
Streptomyces avermitilis
Streptomyces griseus
Streptomyces scabiei
Streptomyces sp. SirexAA-E
Streptomyces violaceusniger
Streptomyces cattleya
Streptomyces flavogriseus
Kitasatospora setae
Arthrobacter aurescens
Kocuria rhizophila
Microlunatus phosphovorus
Kribbella flavida
Thermobifida fusca
Nocardiopsis dassonvillei
Streptosporangium roseum
Frankia sp. CcI3
Frankia sp. EAN1pec
Frankia sp. EuI1c
Frankia alni
Frankia symbiont
Acidothermus cellulolyticus
Nakamurella multipartita
Geodermatophilus obscurus
Kineococcus radiotolerans
Saccharopolyspora erythraea
Saccharomonospora viridis
Amycolatopsis mediterranei
Pseudonocardia dioxanivorans
Actinosynnema mirum
Salinispora tropica
Salinispora arenicola
Micromonospora aurantiaca
Micromonospora sp. L5
Verrucosispora maris
Catenulispora acidiphila
Rubrobacter xylanophilus
Acidimicrobium ferrooxidans DSM 10331
Eggerthella lenta
Eggerthella sp. YY7918
Spirochaeta caldaria DSM 7334
Leptospira borgpetersenii L550
Spirochaeta sp. Buddy
Candidatus Koribacter versatilis
Acidobacterium capsulatum
Granulicella tundricola
Terriglobus saanensis
Candidatus Solibacter usitatus
Candidatus Chloracidobacterium thermophilum B
Paludibacter propionicigenes
Salinibacter ruber
Salinibacter ruber
Rhodothermus marinus DSM 4252
Rhodothermus marinus SG0.5JP17-172
Chitinophaga pinensis
Pedobacter heparinus
Pedobacter saltans
Haliscomenobacter hydrossis
Cyclobacterium marinum
Cytophaga hutchinsonii
Dyadobacter fermentans
Spirosoma linguale
Runella slithyformis
Marivirga tractuosa
Gramella forsetii
Flavobacterium johnsoniae
Flavobacterium psychrophilum
Flavobacterium branchiophilum
Flavobacterium columnare
Robiginitalea biformata
Zunongwangia profunda
Croceibacter atlanticus
Maribacter sp. HTCC2170
Cellulophaga algicola
Cellulophaga lytica
Krokinobacter sp. 4H-3-7-5
Lacinutrix sp. 5H-3-7-4
Zobellia galactanivorans
Muricauda ruestringensis
Flavobacteriaceae bacterium
Fluviicola taffensis
Ilyobacter polytropus
Opitutus terrae
Akkermansia muciniphila
Gemmatimonas aurantiaca
Rhodopirellula baltica
Pirellula staleyi
Planctomyces limnophilus
Planctomyces brasiliensis
Isosphaera pallida
Elusimicrobium minutum
Synechocystis sp. PCC6803
Synechococcus sp. WH8102
Synechococcus elongatus PCC6301
Synechococcus elongatus PCC7942
Synechococcus sp. CC9605
Synechococcus sp. CC9902
Synechococcus sp. CC9311
Synechococcus sp. RCC307
Synechococcus sp. WH7803
Synechococcus sp. PCC7002
Synechococcus sp. JA-3-3Ab
Synechococcus sp. JA-2-3B'a(2-13)
Thermosynechococcus elongatus
Microcystis aeruginosa
Cyanothece sp. ATCC 51142
Cyanothece sp. PCC 8801
Cyanothece sp. PCC 7424
Cyanothece sp. PCC 7425
Cyanothece sp. PCC 8802
Cyanothece sp. PCC 7822
Cyanobacterium UCYN-A
Gloeobacter violaceus
Anabaena sp. PCC7120
Nostoc punctiforme
Anabaena variabilis
Anabaena azollae 0708
Prochlorococcus marinus SS120
Prochlorococcus marinus MED4
Prochlorococcus marinus MIT 9313
Prochlorococcus marinus NATL2A
Prochlorococcus marinus MIT9312
Prochlorococcus marinus AS9601
Prochlorococcus marinus MIT 9515
Prochlorococcus marinus MIT 9303
Prochlorococcus marinus MIT 9301
Prochlorococcus marinus MIT 9215
Prochlorococcus marinus MIT 9211
Prochlorococcus marinus NATL1A
Trichodesmium erythraeum
Acaryochloris marina
Chlorobaculum tepidum
Chlorobaculum parvum NCIB 8327
Chlorobium chlorochromatii
Chlorobium phaeobacteroides DSM 266
Chlorobium phaeobacteroides BS1
Chlorobium limicola
Chlorobium phaeovibrioides
Pelodictyon luteolum
Pelodictyon phaeoclathratiforme
Prosthecochloris aestuarii
Chloroherpeton thalassium
Roseiflexus sp. RS-1
Roseiflexus castenholzii DSM13941
Chloroflexus aurantiacus
Chloroflexus aggregans
Chloroflexus sp. Y-400-fl
Herpetosiphon aurantiacus
Thermomicrobium roseum
Anaerolinea thermophila
Deinococcus radiodurans
Deinococcus geothermalis
Deinococcus deserti
Deinococcus maricopensis
Deinococcus proteolyticus
Truepera radiovictrix
Thermus thermophilus HB27
Thermus thermophilus HB8
Meiothermus ruber
Meiothermus silvanus
Candidatus Nitrospira defluvii
Thermobaculum terrenum
Methanosalsum zhilinae
Methanoculleus marisnigri
Methanothermobacter thermautotrophicus
Methanothermobacter marburgensis
Halobacterium sp. NRC-1
Halobacterium salinarum R1
Haloarcula marismortui
Haloarcula hispanica
Haloquadratum walsbyi
Natronomonas pharaonis
Halorubrum lacusprofundi
Halorhabdus utahensis
Halomicrobium mukohataei
Haloterrigena turkmenica
Natrialba magadii
Haloferax volcanii
Halalkalicoccus jeotgali
Halogeometricum borinquense
Halopiger xanaduensis
Picrophilus torridus
Sulfolobus solfataricus
Sulfolobus acidocaldarius
Sulfolobus islandicus M.14.25
Sulfolobus islandicus M.16.27
Sulfolobus islandicus M.16.4
Sulfolobus islandicus Y.G.57.14
Sulfolobus islandicus Y.N.15.51
Metallosphaera sedula
Metallosphaera cuprina
Pyrobaculum arsenaticum
Halophilic archaeon
184%
150%
122%
100%
82%
67%
55%
Carotenoid biosynthesis - Reference pathway
Carotenoid biosynthesis - Reference pathway
