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KEGG Mapper – Reconstruct Pathway

KEGG Mapper
KEGG Atlas
KEGG		 Search Pathway
Search Brite
Search Module		 Search&Color Pathway
Search&Color Brite
Search&Color Module		 Color Pathway
Color Pathway 3D
Join Brite		 Reconstruct Pathway
Reconstruct Brite
Reconstruct Module

Enter gene list with KO annotation:
Example files:
   genelist.txt (single organism)
   genelist2.txt (multiple organisms)
Alternatively, enter the file name containing the data:

Include global map



Reconstruct Pathway is a KEGG PATHWAY mapping tool that assists genome and metagenome annotations. The input data is a single gene list (for a single organism) or multiple gene lists (for multiple organisms) annotated with KEGG Orthology (KO) identifiers or K numbers. Each line of the gene list contains the user-defined gene identifier followed by, if any, the assigned K number. The mapping is performed through the K numbers against the KEGG reference pathways.

When multiple organisms are given in the input file, each organism must be separated by the # line, which may contain user-defined color specification. Default coloring for two organisms is as follows:
org121+2
regular map                   
global map                  
See KEGG color codes for more details.

Last updated: June 1, 2012