Sequence Similarity Search

BLAST Search

BLAST	FASTA	KEGG2

Enter query sequence:

Sequence data

>asd:AS9A_4086 no KO assigned | (GenBank) Collagen alpha 2(I) chain (A)
MGPSTTGPTIVGPTTVGPTIVGPTIVSPGGGSGAGGGNVVFNPVIAPVIAPVIAPVINPG
APGGGGGGGGGTAAPVTNVNNNTNNNIITTPPGGGGGDTTIIINNPPGGGGGDVTGPVTN
IGDIGNIGDIGLGDISLGDIGLGDISLGDIGNLTGPILTDILTSGITLSEILPVNLLSDN
VFGDLISAPSIGDLTDIGNFVQNLTNIGVIDQSLAIGDIINSLANIGDVTGIGPVGDFLQ
DIAFLNDLTGIGQVGDFLQNLTGIGSIDPSLLQNITGIVQDVNLTDTDVLSNLVNVGDFL
SNVSGIGDVTNIGQVLQNFANFGDLTNVGQVGDILSNLVNVGDPSSVIGDILTNAGDLSG
IGEIGNILSGLSQIGDISNIANVADVLQQFAQIGDLSVFNSVLDGLTGVFDPTVTFNDLV
DVLSNIGDINTLNATLTDVLNDFTGIGQIGDVLSGLVGLNNEGALGQIGDVLTAFGNIEN
LNAIGDVLSNIGNGSGVGELLTGDVTAINQIGDVLSNIGQIGDGANFTAIGSALENIANI
TDPTIIGQIGDFTNVGNLTDVGQIAGFFQDIAQLSDISVLSPMFENIALLSDLIDAGDVT
ALNQINEILTNVASGNELTDVLSNIALISDPTVISQVGELLSGNQLGDITGIAGDFGNVS
DVVTNLLSDNQLGDFAGQIGDVLSGNEVGDVISGIAGGNQVGDVLSGITALNDAAAVGQV
GDILSNFAQVTDNTVITQIGEALSGNQFGDVLSNLAQFDPVVLGQVGDVLSGFTAFSDPA
VIGQVGDILSGNVGAIGQVGDVLSNLASAGDIASIGAIGDALQNFANLSDTSLLSDLISA
GDFTAVGPLFENLAQLGDVNNLSVIGDILSGNVAQGGDVLNNIANADGVTQFGDVLSGIG
SGNLAQIGDVLSGNVAQLSDFSDFAQVGDILSNLGALNDPVLIGQFGDILSGLASNNPVV
ISDVAEILSGNAAQFGPITTFLGDIASISDSTILGQIGDVLSGFGNMENLSGIGDLLSGN
NGDILSDLVGIGDGNGIGQVGDVLSNLATVSDNLNVGALGAALQDIASIGDPSAMFGDIL
SGDVLSNISNFGDLGLAELNQVGAFFQDIAQVGDLTAIGQVFDSLVSLGDVANVGEIGDV
LSGFGLFNDVLSNLGSFGDNATIGSLGAALQDFANISDAALIGDVLSNIASGDPSAALGD
VLSNIAQLGDITDNTVVGEVGDVLSNFAQITDPAIINDFSEALSGLGSWNQLGDLLAGNQ
FGDVLSGLAQIGDPTAIGQLGDVLIGIGNIENLGQFADVLNGDLFSGNVGEIGDVLSQLA
TLGDTANLTAIGNTLQDFANITDPSVLSDILNPSSDIGDVLSGFTTGDFGQLTAFFSDLA
DIGDINVIGDVLSNVAQLSDIANGNAITDVLSGIAGGNEIGDVVGGIANGDNGVGQIGDV
AAISLAQISDVLNGNQFGDVLSGDFGQIGDVLSGLTGISDPAVIAQVGDVLTGLAGGNDI
SDVLNGLTTGDFVSIGEIGDVLSGIANADNVGQIGDVLSGFGNLENVGQFSEILSGLVGV
GDFAPVTTLGSVLQDFANTGDISQVGTFFENITQNGDLNVLNPVLENISTLSDFGNITDI
SDVLSGFGNISDPTIVAPITDVLSGVANISDPTVIGQVGDVLSGLASGNEVGDVLSGLTG
IGDGNSIGQLGDILSGLGSFGDVNGIGEISDVLSNFGGLANIGQVGDILSNFDAISDNLN
IGSLAATLQNVAQMGDFAPFLQDVGQVGDIAGISAVFENLSALNEISNVGQISDVLSNIG
NANEVGDVLSGLANANQLGDVLSGIANVSDPSVLGQIGDVLSGFGSGNEIGDVLSGLATI
TDPIVLGEVGDILSGIANLDNTQIGNVLSDLVDASDFANVGQIGDVLSNLAGAGDFTNIG
QIGDLLSNFGTIGDSFNIGEIGAVLQDIAQTGDISQLGAFVDTLGQMGDLNVLSPVFESI
TALNDISNIGQIGDVLSNFVEAGNANQLGDVLSGIANISDPTVVGQINDVLSSFGNANDV
SDVLSDLIAVGDNATIGQIGDVLSSIGSFENVGQISESLNDLSALSDNLNISELSAVLQD
VAQTGDIGQFAAFLQDVAQVGDIGQLGAVFENLSVLSDFANSSDIGDVLSGNANPVTEIL
PGDFSDIGQISDVLNDLSALNPAVVGQVGDVLSGFGNITDPTFIGQFGNVLNDLVDAGNE
NQLAPLLSDLIEVGDVTNIGQFSDILNDLSALNPSDIGQVGDVLSGLSGIDAGDVSGIGD
VLSGNAGQFGDVLSSLVALSDTVDIGNLGGALQDFANISDSTVLSDLFNGLAGGDPSAAI
GDVLSGISAGDIGSITAFFDDLAQIGDFGDVSAVFDNISVLGDILSGNDIAGTISDIASG
NAVFGQVGDFLNGVGTISDPSVIGEIGDVLSGLSAIGDPTIIGQFGDVLSGIVSGNQISD
VLSGDFGQLGPISSVIGDLTGISDPTVIGQVGDVLSDLVDAGDITNIGQVGDLLSGNAGE
IGDVLSNLAALSDTVDVGNLGATLQDFANISDPSVLNDVIDSVINVSGDPSVVIGDVLSG
LSAGDIGSLTAFFEDLAQVGDFGNVTAVIENLATLGDFGNIGQIGDFIANIGEIPGLGDL
PGLGDLPGLGNLPGLGELPDFSDVLDPSVIGDLTGGIGAVEFVGDISGSFSGAAEAVAGV
AGAAAGAAEGAATAAGAVTGAFAAVGEAGGTLSGAFDGSAGAAAQAAGALSGGATALGDA
SGSLGGAFAGGAEALAGAAGGAAGAVSGAAGAAAGATGALAGTAGAASEVAGNLGGAFAG
GAEAVGGAAGALAGSAGAVSDATGAVAGSAGAAGQTAGTVAGAAAAAAGGAAAAAAGLAA
VAAGGAEAIGGFTGMGEALAGAAGDLAGSAGAVGGVTGALAGSAGALGEAAGAAGAAMQG
GATAAGDVAGALAGSAGAVGDVAGTAAAGLAGGAGAVGDVAGSLAGSAGALGEAAGAASG
ALAGGAEALGGAAGAFSGALESGADAAAGAAGAFAGAAGAAGDVAGAVGSGLSGGAAAAG
ALAGSAGALGDVAGAVGGAATGGAGAVGDVAGALAGSASGLAGAAGGLTGAVEGGASAFG
DAAGALAGSAGALGEAAGAATGAFAGGAQALGDAGTALAGSAGAVGDVAGALAGSAGAVG
DVAGTLAGSAGALGEAAGAVGGAFAGGAEALGGAAGALAGSAGAVGDVAGTLAGSAAAFG
DVAGAGAGALAGGAEALGGVAGGLAGSAGAVGDVAGGLAGSAGALGEAAGGFAGAFEGGA
AALGDAAGGLAGVAGAAGEAGGALAGAAGAAGDVAGALAGSAGAAGDVAGALAGSAGALG
EAGGALAGSAGALGGAAGAIAGAAEAGAGIGGELGDTAFGLGGALAGGADAAAGAAGALS
GSAEALGGVAGGAAGAFAGGAEAVGGAAGALAGSAGALGGVAGGAAGAFAGGAEAVGGAA
GALAGSAGALGGVAGGAAGAFAGGAEVVGGAAGALAGSAGAVGDVAGSAAGAFAGGAGAL
GEAGAGLAGSAGAVGDAAGAVAGSAGVVGDAAGALAGSAGAVGDAAGAFSGALAGGAEAI
GGVAGAAAGSAGAVGDVAGALAGSAGVVGDAAGAAAGAFSGGAEALGGAAGALAGSAGAV
GDVAGTLAGSAGALGETAGAFTGAFEGGAGAVGDAAGALAGSAEVLGDTAGAFSGALQGG
AAAAGSTAAALAGSAGALGDAAGSVGGALSGGADALASTAGAAAGSAGALGGLAGALGGA
FGGGAAALGGVAGAAGAGLEGGAGAAGGAAGALAGSAGALGETAGTLGGALAGGADAFGG
ATGALAGSAGALGDAAAAFSGALESGADAAGGLAGSAGVIGDVAGGLAGSAGALGDMAGA
GGAALAGGAGAAAAAAGALAGSAGALGDVAGAAAGGAEAVGDVAGALAGTADAGGALAGS
AGAIGDTAGAFTGAFQGGADALGGAGGALAGSAGAVGDAAGGFAGAVDGGAGIIGDAAGV
FAGTAGGTAEAVGGVTGAVAGGADALGGAAGALSGSTAFLGDATAGIAGAGGGAAEAVGG
AAGAVSGGAEALGGAAGAVSGTLDGAAGITGGLTTAPDSVSSTSFSDGTDGFGGVTGTVT
DTVGAVTDYSTYSAPVTEYIAPLPDYTAPVTDTVTSGAETLGGTASGLTSGLTSGLSSGL
SQTWDSGLTSAFDAPAGDSTDFIG

Select program and database:

BLASTP (prot query vs prot db)
BLASTX (nucl query vs prot db)

KEGG GENES

	Eukaryotes Prokaryotes Viruses
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KEGG MGENES

	Environmental Organismal
	Favorite samples

Microbial Reference Genes

Ocean (OM-RGC) Human gut (IGC)

nr-aa (GenBank, UniProt, RefSeq and PDBSTR)
     Swiss-Prot UniProt RefSeq
     PDBSTR
UniRef50 UniRef90 UniRef100
Virus-Host DB
Environmental Viral Genome (predicted proteins)

BLASTN (nucl query vs nucl db)
TBLASTN (prot query vs nucl db)

KEGG GENES

	Eukaryotes Prokaryotes Viruses
	Favorite organism code or category

KEGG MGENES

	Environmental Organismal
	Favorite samples

KEGG GENOME

	Favorite organism code or category

Microbial Reference Genes

	Ocean (OM-RGC) Human gut (IGC)
	Ocean (MATOU)

nr-nt (GenBank, EMBL and RefSeq)
     dbEST dbGSS HTGs dbSTS
     RefSeq
Ribosomal Databases
     SILVA (SSU, 16S/18S) SILVA (LSU, 23S/28S)
     PR2 (Protist Reference)
     RDP (Prokaryotic 16S) RDP (Fungal 28S)
EPD
Virus-Host DB Genes
     Genomes
Environmental Viral Genome

Environmental Viral Genome (predicted CDS)

Scoring matrix:

(except for BLASTN)

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Optional parameters: (see manual for details)

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