BLAST Search
BLAST
FASTA
KEGG2
Enter query sequence:
Sequence data
>cpsc:B711_0796 K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] | (GenBank) rpoC; DNA-directed RNA polymerase, beta' subunit (A) MFGEGSRDNVSLSKEGLFDKLEIGIASDITIRDKWSCGEIKKPETINYRTFKPEKGGLFC EKIFGPTKDWECCCGKYKKIKHKGIVCDRCGVEVTLSKVRRERMAHIELAVPIVHIWFFK TTPSRIGNVLGMTASDLERIIYYEEYVVIDPGKTDLNKKQLLNDAQYREVIEKWGKDSFV AKMGGEAIYDLLKSEDLQSLLKELKDRLRKTKSQQARMKLAKRLKIIEGFVSSSNHAEWM VLKSVPVVPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKAILRLKTPEVIVRNEKR MLQEAVDALFDNGRHGHPVMGAGNRPLKSLSEMLKGKNGRFRQNLLGKRVDYSGRSVIIV GPELKFNQCGLPKEMALELFEPFIIKRLKDQGSVYTIRSAKKMIQRGAPEVWDVLEEIIK GHPVLLNRAPTLHRLGIQAFEPVLIEGKAIRVHPLVCAAFNADFDGDQMAVHVPLSIEAQ LEAKVLMMAPDNIFLPSSGKPVATPSKDMTLGIYYLMADPTYFPEEHGGKVKIFRDVTEV LRALYSGGFLDEHTNGRRDETGRGIHIHEKIKVRIDGQVIETTPGRVLFNRIVPKELGFQ NYSMPSKRISELILQCYKKVGLEATVRFLDDLKDLGFIQATKAAISMGLKDVKIPEIKSE ILKEAYDKVAIVKKQYDDGIITDGERHSKTISIWTEVSELLSDALYVEISKQTKSKHNPL FLMIDSGARGNKSQLKQLGALRGLMAKPNGAIIESPITSNFREGLTVLEYSISSHGARKG LADTALKTADSGYLTRRLVDVAQDVIITEKDCGTLNHIEITAIRQGSEELLPLKDRIYGR TVSEDIYQPGDKSKLLAKNGDVITSAQAELIDDAGIESIKIRSTLTCESRRGVCAKCYGL NLANGRLIGLGEAVGIIAAQSIGEPGTQLTMRTFHLGGIAATSSTPEIVTDCDGILVYMD LRVVVGQDGNHLVLNKKGAIHVVRDEGRSLEEYKKLLSTKSIESLETYPVELGVKILVGD GEKVTAGQRIAEVELHNIPIICDKPGFVKYEDLVEGISTEKVVNKNTGLVELIVKQHRGE LHPQIAIYSDPGLTELVGTYAIPSGAIVSVEENQKVDPGMLLARLPRGAIKTKDITGGLP RVAELVEARKPEDAADIAKIDGVVDFKGIQKSKRILVVRDEITGMEEEHLIPLTKHLIVQ RGDHVMKGQQLTDGLVVPHEILEICGVRELQKYLVNEVQEVYRLQGVDINDKHIEIIVRQ MLQKVRITDPGDTTLLFGEEVNKKEFYEENKRTEEEGGKPAQAVPVLLGITKASLGTESF ISAASFQDTTRVLTDAACSSKTDYLLGFKENVIMGHMIPGGTGFDTHKRIKQYLEKEQEE LVFDFVSESECAC
Select program and database:
BLASTP (prot query vs prot db)
BLASTX (nucl query vs prot db)
KEGG GENES
Eukaryotes
Prokaryotes
Viruses
Favorite
organism code or category
KEGG MGENES
Environmental
Organismal
Favorite
samples
Microbial Reference Genes
Ocean (OM-RGC)
Human gut (IGC)
nr-aa (GenBank, UniProt, RefSeq and PDBSTR)
Swiss-Prot
UniProt
RefSeq
PDBSTR
UniRef50
UniRef90
UniRef100
Virus-Host Database
BLASTN (nucl query vs nucl db)
TBLASTN (prot query vs nucl db)
KEGG GENES
Eukaryotes
Prokaryotes
Viruses
Favorite
organism code or category
KEGG MGENES
Environmental
Organismal
Favorite
samples
KEGG GENOME
Favorite
organism code or category
Microbial Reference Genes
Ocean (OM-RGC)
Human gut (IGC)
Ocean (MATOU)
EGENES
nr-nt (GenBank, EMBL and RefSeq)
dbEST
dbGSS
HTGs
dbSTS
RefSeq
Ribosomal Databases
SILVA (SSU, 16S/18S)
SILVA (LSU, 23S/28S)
PR2 (Protist Reference)
RDP (Prokaryotic 16S)
RDP (Fungal 28S)
EPD
Virus-Host Database
CDS
Genomes
Scoring matrix:
BLOSUM62
BLOSUM80
PAM30
PAM70
PAM250
(except for BLASTN)
Filter:
None
DUST in BLASTN, SEG in others
Output options:
Set the maximum number of database sequences to be reported:
Set the maximum number of alignments to be displayed:
Optional parameters:
(see
manual
for details)
E-value threshold
Alignment view:
Pairwise
master-slave with identities
master-slave without identities
flat master-slave with identities
flat master-slave without identities
Get ASN.1 for SeqAnnot
Get ASN.1 for the Blast Object
(except for BLASTX)
Additional options:
(delimited by whitespaces)
Feedback
KEGG
GenomeNet
Kyoto University Bioinformatics Center