BLAST Search
BLAST
FASTA
KEGG2
Enter query sequence:
Sequence data
>rno:360990 K11853 ubiquitin carboxyl-terminal hydrolase 34 [EC:3.4.19.12] | (RefSeq) Usp34; ubiquitin carboxyl-terminal hydrolase 34 (A) MCENCADLVEVLNEISDLEGGDGLQLRKEHTLKIFAYINSWTQRQCLCCFKEYKHLEIFN QVVCALINLVIAQVQVLRDQLCKHCTTTNTDSTWQDESNEAEEPLSIDRECNEGHTERQK SIEKKSNSTGICNLTEEESSKSSDPFSLWNTDEKEKLLLCVAKIFQIQFPLYTAYKHNTH PTIEDISTQESNILGAFCDMNDVEVPLHLLRYVCLFCGKNGLSLMKDCFEYGTPETLPFL IAHAFITVVSNIRIWLHIPAVMQHIIPFRTYVIRYLCKLSDQELRQSAARNMADLMWSTV KEPLDTTLCFDKESLDLAFKYFMSPTLTMRLAGLSQITNQLHTFNDVCNNESLVSDTETS IAKELADWLISNSVIEHIFGPNLHIEIIKQCQVILNFLAAEGRLSTQHIDCIWAAAQLKH CSRYIHDLFPSLIKNLDPVPLRHLLNLVSALEPSVHTEQTLYLASMLIKALWNNALAAKA QLSKQSSFASLLNTNMPIGNKKEEEELRRAAPSPWSPAASPQSSDNSDTHQSGASDIEMD EQLINRNKHVQQRLSDTEESMQGSSDETANSGEDGSSGPGSSSGQSDGSSHEVNSSHASQ SAGSPGSELQSEDIADIEALKEEEEEEEEEEEEEEEEEEDEEEEEDDEEEDDDDDDDDHA HNPPKNTCGTEMRNRKLENQAAICLGESQATSERNGTHGGAGKDLVFNTEPLPSVDNRIR MLDACAHSEDPEHDISGEMSSAHIAQGSQESCITRSGDFLGETIGNELFNCRQFIGPQHH HHHHHHHHHHHHHHHHHHHHHDGHMVDDMLSADDVSCSSSQVSAKSEKNMADFDGEESGC EEELVQINSHAELTSHLQQHLPNLASIYHEHLSQGPAVHKHQFSSNAVTDINLDNVCKKG NTLLWDIVQDDDAINLSEGLINEAEKLLCSLVCWFTDRQIRMRFIEGCLENLGNNRSVVI SLRLLPKLFGTFQQFGSSYDTHWITMWAEKELNMMKLFFDNLVYYIQGIREGRQKHTLYS HSAEVQVRLQFLTCVFSTLGSPDHFRLSLEQVDILWHCLVEDSECYDDALHWFLNQVRSK DQHAMGMETYKHLFLEKMPQLKPETISMTGLNLFQHLCNLARLATSAYDGGSNSELCGMD QFWGIALRAQSGDVSRAAIQYINSYYINGKTGLEKEQEFISKCMESLMIASSSLEQESHS SLTVIERGLLMLKTHLEAFRRRFAYHLRQWQIEGTGISSHLKALSDKQSLPLRVVCQPAG LPDKMTIEMYPSDQVADLRAEVTHWYENLQKEQINQQAQLQEFGQSSRKGEFPGGLMGPV RMISSGHELTTDYDEKALHELGFKDMQMVFVSLGAPRRERKGEGVQLPASCLPPPQKDNI PMLLLLQEPHLTTLFDLLEMLASFKPPSGKVAVDDSESLKCEELHLHAENLSRRVWELLM LLPTCPNMLTAFQSISDEQSNDGVNWKELLKIKSAHKLLYALEIIEALGKPNRRIRREST GSYSDLYPDSDDSSEDQVENSKNSWTCKFVAAGGLQQLLEIFNSAMLEPKEHESWTVWQL DCLACLLKLICQFAVDPSDLDLAYHDVFAWSGIAESHRKRAWPGKSRKAAGDHAKSLHVP RLTEVFLVLVQGTSLIQRLMSVAYTYDHLAPRVLKAQSDHRSRHEVSHYSMWLLVSWAHC CSLVKSSLADSDHLQDWLRKLTLLIPETAVRHESCNGLYKLSLSGLDGGDSIHRSFLLLA ASTLLKFLPDAQALKPLRIDDYEEEPMLKPGCKEYFWLLCKLVDNIHIKDASQTTLLDLD ALARHLADCIRSREILDHLDGNLEDDGLSGLLRLATSVIKHKPPFKFSREGQEFLRDVFN LLFLLPSLKDRRQPKCKSHSSRAAAYDLLVEMVKGSVENYRLVHNWVMAQHMQSHAPYKW DYWPHEDVRAECRFVGLTNLGATCYLASTIQQLYMIPEARQAVFTAKYSEDMKHKTTLLE LQKMFTYLMESECKAYNPRPFCKTYTMDKQPLNTGEQKDMTEFFTDLITKVEEMSPELKN TVKSLFGGVITNNVVSLDCEHVSQTAEEFYTVRCQVADMKNIYESLDEVTIKDTLEGDNM YTCSHCGKKVRAEKRACFKKLPRILSFNTMRYTFNMVTMMKEKVNTHFSFPLRLDMTPYT EDFLMGKSDRKEGFKDVGDHSKDTESYEYDLIGVTVHTGTADGGHYYSFIRDIVNPHAYK NNKWYLFNDAEVKPFDSAQLASECFGGEMTTKTYDSVTDKFMDFSFEKTHSAYMLFYKRM EPEEENGREYKFDVSSELLEWIWHDNMQFLQDKNIFEHTYFGFMWQLCSCIPSTLPDPKA VSLMTAKLSTSFVLETFIHSKEKPTMLQWIELLTKQFNNSQAACEWFLDRMADDDWWPMQ ILIKCPNQIVRQMFQRLCIHVIQRLRPVHAHLYLQPGMEDGSDDMDASVEDIGGRSCVTR FVRTLLLIMEHGVKPHSKHLTEYFAFLYEFAKMGEEESQFLLSLQAISTMVHFYMGTKGP ENPQVEVLSEEEGEEEEEEEDILSLAEEKYRPAALEKMIALVALLVEQSRSERHLTLSQT DMAALTGGKGFPFLFQHIRDGINIRQTCNLIFSLCRYNNRLAEHIVSMLFTSIAKLTPEA ANPFFKLLTMLMEFAGGPPGTPPFASYILQRIWEVIEYNPSQCLDWLAVQTPRNKLAHSW VLQNMENWVERFLLAHNYPRVRTSAAYLLVSLIPSNSFRQMFRSTRSLHIPTRDLPLSPD TTVVLHQVYNVLLGLLSRAKLYVDAAVHGTTKLVPYLSFMTYCLISKTEKLMFSTYFMDL WNLFQPKLSEPAIATNHNKQALLSFWYNVCTECPENIRLIVQNPVVTKNIAFNYILADHD DQDVVLFNRGMLPAYYGILRLCCEQSPAFTRQLASHQNIQWAFKNLTPHASQYPGAVEEL FNLMQLFIAQRPDMREEELEDIKQFKKTTISCYLRCLDGRSCWTTLISAFRILLESDEDR LLVVFNRGLILMTESFNTLHMMYHEATACHVTGDLAELLSIFLSVLKSTRPYLQRKDVKQ ALIQWQERIEFAHKLLTLLNSYSPPELRNACIDVLKELVLLSPHDFLHTLVPFLQHNHCT YHHSNIPMSLGPYFPCRENIKLIGGKSNIRPPRPELNMCLLPTMVETSKGKDDGYDRTLL DFFFSYHQLIHLVCRVAINCEKFTETLVKLSVLVAYEGLPLHLALFPKLWTELCQTQSAM SRNCVKLLCEDPVFAEYIKCILMDERTFLNNNIVYTFMTHFLLKVQSQVFSEANCASLIS TLITNLINQYQNLQSDFTNRVEISKASASLNGDLRALALLLSVHTPKQLNPALIPTLQEL LNKCRTCLQQRNSLQEQEAKERKTKDDEGATPVKRRRVSSDEEHTVDSCIGDIKTDARDV LTPTSTSDNETRDSSIIDPGTEQDLPSPENGSVKEYRMEGPSSFSEDGSHTRSQHAEEQS NSGRFDSCKDHSSKDATLADDESEFPSTSISAVLSDLADLRSCDGQALSSQDPEAAVSLS CGHSRGLISHMQQHDILDTLCRTIESTIHVVTRISGKGNQAAS
Select program and database:
BLASTP (prot query vs prot db)
BLASTX (nucl query vs prot db)
KEGG GENES
Eukaryotes
Prokaryotes
Viruses
Favorite
organism code or category
KEGG MGENES
Environmental
Organismal
Favorite
samples
Microbial Reference Genes
Ocean (OM-RGC)
Human gut (IGC)
nr-aa (GenBank, UniProt, RefSeq and PDBSTR)
Swiss-Prot
UniProt
RefSeq
PDBSTR
UniRef50
UniRef90
UniRef100
Virus-Host Database
BLASTN (nucl query vs nucl db)
TBLASTN (prot query vs nucl db)
KEGG GENES
Eukaryotes
Prokaryotes
Viruses
Favorite
organism code or category
KEGG MGENES
Environmental
Organismal
Favorite
samples
KEGG GENOME
Favorite
organism code or category
Microbial Reference Genes
Ocean (OM-RGC)
Human gut (IGC)
Ocean (MATOU)
EGENES
nr-nt (GenBank, EMBL and RefSeq)
dbEST
dbGSS
HTGs
dbSTS
RefSeq
Ribosomal Databases
SILVA (SSU, 16S/18S)
SILVA (LSU, 23S/28S)
PR2 (Protist Reference)
RDP (Prokaryotic 16S)
RDP (Fungal 28S)
EPD
Virus-Host Database
CDS
Genomes
Scoring matrix:
BLOSUM62
BLOSUM80
PAM30
PAM70
PAM250
(except for BLASTN)
Filter:
None
DUST in BLASTN, SEG in others
Output options:
Set the maximum number of database sequences to be reported:
Set the maximum number of alignments to be displayed:
Optional parameters:
(see
manual
for details)
E-value threshold
Alignment view:
Pairwise
master-slave with identities
master-slave without identities
flat master-slave with identities
flat master-slave without identities
Get ASN.1 for SeqAnnot
Get ASN.1 for the Blast Object
(except for BLASTX)
Additional options:
(delimited by whitespaces)
Feedback
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GenomeNet
Kyoto University Bioinformatics Center