KEGG ORTHOLOGY: K12126

ORTHOLOGY: K12126

Entry

K12126                      KO

Symbol

PIF3

Name

phytochrome-interacting factor 3

Pathway

map04075

Plant hormone signal transduction

map04712

Circadian rhythm - plant

Brite

KEGG Orthology (KO) [BR:ko00001]
09130 Environmental Information Processing
  09132 Signal transduction
   04075 Plant hormone signal transduction
    K12126  PIF3; phytochrome-interacting factor 3
09150 Organismal Systems
  09159 Environmental adaptation
   04712 Circadian rhythm - plant
    K12126  PIF3; phytochrome-interacting factor 3
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors
    K12126  PIF3; phytochrome-interacting factor 3
Transcription factors [BR:ko03000]
Eukaryotic type
  Basic helix-loop-helix (bHLH)
   HLH domain only
    K12126  PIF3; phytochrome-interacting factor 3

Genes

ATH:	AT1G09530(PIF3)

ALY:

9328571

CRB:

17897209

CSAT:

104739545 104755147 104767826

EUS:	EUTSA_v10007343mg

BRP:	103843349 103871725

BNA:	106346269 106397555 106419805 125578610

BOE:	106307202 106343710

RSZ:	108815296 108856167 130508993

THJ:	104820437 104823710

CPAP:

110814175

CIT:	102608210 102621125

CIC:	CICLE_v10019786mg CICLE_v10027890mg

PVY:	116109775 116119657 116143263

MINC:

123196852 123216759 123221777 123222501

TCC:	18600647 18613821

GRA:	105761152 105795211 105802905

GHI:	107912232 107922999 107927211 107953017 107954397 107955422

GAB:	108457881 108474109 108479827

HSYR:

120163899

DZI:	111277137 111294151 111297995 111304928

EGR:	104431553 104434287 104456902

GMX:	100794974 100804665 100818543 100820151 102659557

GSJ:	114370212 114372651 114399010 114403093 114407482

PVU:	PHAVU_001G218800g PHAVU_007G206000g PHAVU_007G208500g

VRA:	106756809 106757404 106772189

VAR:	108325538 108326247 108327124 108328010

VUN:	114168622 114181698 114192043

VUM:	124822896 124822966 124826571

CCAJ:

109797206 109808333 109809145

APRC:

113863341 113871065 113873753

MTR:	11406493 11427226 11430037

TPRA:

123891011 123891040 123902210

CAM:	101490374 101501589

PSAT:

127093121 127128915 127132501 127132546

VVO:	131610485 131612762 131622687 131627334 131644011

LJA:	130716782 130717580 130730985

ADU:	107465071 107465093 107492248 107492316

AIP:	107617992 107619574 107645992 107646015

AHF:	112695628 112695653 112710631 112710671 112757529 112757971 112775424 112779460

LANG:

109328952 109329450 109335282 109335978 109345863 109346242

PCIN:

129288775

QSA:	O6P43_007332 O6P43_007367

FVE:

RCN:

PPER:

PMUM:

PAVI:

PDUL:

MDM:	103433823 103450807

MSYL:

126594072 126619539

PXB:	103928262 103955304 103955840

ZJU:	107411687 107426221 112492854

MNT:

CSAV:

CSV:

CMO:

BHJ:

MCHA:

CMAX:

CMOS:

CPEP:

RCU:	8265863 8274969

MEAN:

126671502

JCU:	105642714 105647368

HBR:	110633971 110634469 110644015 110653382 110661711

MESC:

110615566 110621032 110622868

POP:	18098446 7478869 7486837

PEU:	105120049 105125228 105135723 105136420

PALZ:

118034932 118041138 118060868

JRE:	109000498 109007770 109018735

CILL:

122304074 122317167

CAVE:

132170919 132186813

QSU:	111988490 112000967 136064798

QLO:	115972550 115979922

TWL:

120011465

VVI:	100247781 100253874

VRI:	117918322 117930702

SLY:

SPEN:

SOT:

SSTN:

SDUL:

CANN:

LBB:

NTA:	107784593 107795081 107827926

NSY:	104224933 104241015

NTO:

104086604

NAU:	109234067 109236817

INI:	109165868 109174582

ITR:	116028090 116032601

SIND:

105169008

OEU:	111382213 111384888 111410790

EGT:

105978175

SSPL:

121742142 121743530 121755927 121755985 121758898

SMIL:

131022088

SHIS:

125190705 125222959

APAN:

127252512

HAN:	110885065 110915563

ECAD:

LSV:

CCAV:

DCR:

CSIN:

RVL:	131308746 131326497

AEW:	130758899 130779665 130785452 130785909

BVG:

104890618

SOE:

110787251

CQI:	110701254 110736579

ATRI:

130817811 130828424

MOF:

131152949

NNU:	104585579 104607195

MING:

PSOM:

OSA:

OBR:

OGL:

BDI:	100823250 100844358

ATS:

109750422

TDC:	119323988 119364251

TAES:

123110986 123180361 123190549

LPER:

127342591 127346894

LRD:	124646530 124647683 124664805

SBI:	110433966 8071295

ZMA:	100382453 103641361

MFLO:

136458118 136512540 136514985 136517685

SITA:

101757582 101773457

SVS:

117847462

PVIR:

120672004 120697388 120706604

PHAI:

112884077 112894423

PDA:	103697220 103714720 103720128

EGU:	105035562 105040114 105059744

MUS:	103985843 103993869

DCT:

110113204

PEQ:

110022360

AOF:	109843010 109848277

MSIN:

131224765 131230212

NCOL:

116262366

ATR:

18430168

SMO:	SELMODRAFT_114141(PIF3)

PPP:	112275291 112286119 112291418 112294434

» show all

Reference

PMID:9845368

Authors

Ni M, Tepperman JM, Quail PH.

Title

PIF3, a phytochrome-interacting factor necessary for normal photoinduced signal transduction, is a novel basic helix-loop-helix protein.

Journal

Cell 95:657-67 (1998)
DOI:10.1016/S0092-8674(00)81636-0

Sequence

[ath:AT1G09530]

Reference

PMID:10797009

Authors

Martinez-Garcia JF, Huq E, Quail PH

Title

Direct targeting of light signals to a promoter element-bound transcription factor.

Journal

Science 288:859-63 (2000)
DOI:10.1126/science.288.5467.859

Sequence

[ath:AT1G09530]

All links

Ontology (2)   
   KEGG BRITE (2)   
Pathway (4)   
   KEGG PATHWAY (4)   
Gene (320)   
   KEGG GENES (310)   
   KEGG MGENES (3)   
   RefGene (5)   
   OC (2)   
Literature (2)   
   PubMed (2)   
All databases (328)   

Download RDF

ORTHOLOGY: K16189

Entry

K16189                      KO

Symbol

PIF4

Name

phytochrome-interacting factor 4

Pathway

map04075

Plant hormone signal transduction

Brite

KEGG Orthology (KO) [BR:ko00001]
09130 Environmental Information Processing
  09132 Signal transduction
   04075 Plant hormone signal transduction
    K16189  PIF4; phytochrome-interacting factor 4
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors
    K16189  PIF4; phytochrome-interacting factor 4
Transcription factors [BR:ko03000]
Eukaryotic type
  Basic helix-loop-helix (bHLH)
   HLH domain only
    K16189  PIF4; phytochrome-interacting factor 4

Genes

ATH:	AT2G43010(PIF4) AT3G59060(PIL6)

ALY:	9314326 9317951

CRB:	17886051 17888247

CSAT:

104781817 104782811 104785058 104788144 104792183 104793231

EUS:	EUTSA_v10005929mg EUTSA_v10016715mg

BRP:	103841766 103858039 103866034

BNA:	106368315 106388298 111200351 111205541 125606859

BOE:	106312330 106328266 106337536

RSZ:	108844577 108849620 108856357 130494791 130509622

THJ:

104803391

CIT:

102626817

CIC:	CICLE_v10031028mg

PVY:

116115059

MINC:

123207187 123217404 123222870

TCC:

18612195

GHI:	107888469 107939027

GAB:

108455997

HSYR:

120118602 120122884 120147432

DZI:

111293155

EGR:

104442415

GMX:	100784531 100800166 100811345(PIF4B) 100811777(PIF4A)

GSJ:	114383356 114397757 114401519 114423311

PVU:	PHAVU_006G028500g PHAVU_008G196800g

VRA:	106763151 106778791

VAR:	108337407 108343461

VUN:	114186941 114194020

VUM:	124820110 124847395

CCAJ:

APRC:

MTR:

TPRA:

CAM:

PSAT:

VVO:

LJA:

ADU:

AIP:

AHF:	112702078 112766525

LANG:

109341452

PCIN:

129297869 129304242 129317257

QSA:	O6P43_014741 O6P43_021016 O6P43_021033

FVE:

RCN:

PPER:

PMUM:

PAVI:

PDUL:

MDM:	103405139 103411497

MSYL:

126583885 126611127

PXB:	103947396 103965596

ZJU:

MNT:

CSAV:

CSV:

CMO:

BHJ:

MCHA:

CMAX:

CMOS:

CPEP:

POP:	7464824 7480707

PEU:	105126881 105131457

PALZ:

CAVE:

QSU:

QLO:

TWL:	119981743 119983793

VVI:

VRI:

SLY:

SPEN:

SOT:

SSTN:

SDUL:

CANN:

LBB:

NTA:	107793439 107811765

NSY:

104210409

NTO:

104097367

NAU:

109228555

INI:	109187920(PIF4)

ITR:

SIND:

OEU:

EGT:

SSPL:

121742194 121744792 121755794 121758705

SMIL:

SHIS:

MOF:

NNU:

MING:

TSS:	122640378 122650266

PSOM:

113281592 113287256

OSA:	4352761 9270162

OBR:	102708265 102712413 102721722

OGL:	127757971 127765720

BDI:	100828542 100831206 100831583

ATS:	109739506 109766858 109767228 109775123

TDC:	119299166 119303044 119303409 119307410 119311721 119312063 119354628 119363832

TAES:

123102237 123104931 123110413 123113231 123119420 123122741

TUA:	125507824 125510528

LPER:

127293725

LRD:	124703410 124703734 124704469

SBI:	8062228 8070136 8084151 8086399

ZMA:	100281419 100384229 103633058 103636724 103654692

MFLO:

136477718 136477946 136505101 136508204 136520602 136522537

SITA:

101760676 101775649 101780784 101784240

SVS:	117839281 117840501 117846972

PVIR:

120649552 120650282 120659315 120661594 120666899 120690561 120691122 120700099

PHAI:

112874224 112875171 112884480

PDA:	103696683 103722886

EGU:	105032028 105033626

MUS:	103982233 103983547 103989861 103989881

ZOF:	121979800 121980973 121984863 122012245 122015793 122015796 122037937

DCT:	110099714 110108343 110111385 110113833

PEQ:	110018384 110028745 110029952

AOF:	109833058 109851042

MSIN:

131245928

NCOL:

116267385

» show all

Reference

PMID:19249207

Authors

Koini MA, Alvey L, Allen T, Tilley CA, Harberd NP, Whitelam GC, Franklin KA

Title

High temperature-mediated adaptations in plant architecture require the bHLH transcription factor PIF4.

Journal

Curr Biol 19:408-13 (2009)
DOI:10.1016/j.cub.2009.01.046

Reference

PMID:19321147

Authors

Lucyshyn D, Wigge PA

Title

Plant development: PIF4 integrates diverse environmental signals.

Journal

Curr Biol 19:R265-6 (2009)
DOI:10.1016/j.cub.2009.01.051

Reference

PMID:21150090

Authors

Kunihiro A, Yamashino T, Mizuno T

Title

PHYTOCHROME-INTERACTING FACTORS PIF4 and PIF5 are implicated in the regulation of hypocotyl elongation in response to blue light in Arabidopsis thaliana.

Journal

Biosci Biotechnol Biochem 74:2538-41 (2010)
DOI:10.1271/bbb.100586

Reference

PMID:22123947

Authors

Franklin KA, Lee SH, Patel D, Kumar SV, Spartz AK, Gu C, Ye S, Yu P, Breen G, Cohen JD, Wigge PA, Gray WM

Title

Phytochrome-interacting factor 4 (PIF4) regulates auxin biosynthesis at high temperature.

Journal

Proc Natl Acad Sci U S A 108:20231-5 (2011)
DOI:10.1073/pnas.1110682108

Reference

PMID:22536829

Authors

Hornitschek P, Kohnen MV, Lorrain S, Rougemont J, Ljung K, Lopez-Vidriero I, Franco-Zorrilla JM, Solano R, Trevisan M, Pradervand S, Xenarios I, Fankhauser C

Title

Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling.

Journal

Plant J 71:699-711 (2012)
DOI:10.1111/j.1365-313X.2012.05033.x

All links

Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Gene (251)   
   KEGG GENES (248)   
   OC (3)   
Literature (5)   
   PubMed (5)   
All databases (260)   

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