KEGG   ORTHOLOGY: K14580
Entry
K14580                      KO                                     
Symbol
nahAd, ndoC, nbzAd, dntAd
Name
naphthalene 1,2-dioxygenase subunit beta [EC:1.14.12.12 1.14.12.23 1.14.12.24]
Pathway
map00624  Polycyclic aromatic hydrocarbon degradation
map00626  Naphthalene degradation
map00627  Aminobenzoate degradation
map00633  Nitrotoluene degradation
map00642  Ethylbenzene degradation
map01100  Metabolic pathways
map01120  Microbial metabolism in diverse environments
map01220  Degradation of aromatic compounds
Module
M00534  Naphthalene degradation, naphthalene => salicylate
Reaction
R02968  naphthalene,NADH:oxygen oxidoreductase (1,2-hydroxylating)
R05422  fluorene,NADH:oxygen oxidoreductase
R05423  
R05424  
R05425  
R05426  
R05427  
R06909  naphthalene,NADH:oxygen oxidoreductase (1,2-hydroxylating)
R06930  naphthalene,NADH:oxygen oxidoreductase (1,2-hydroxylating)
R06937  naphthalene,NADH:oxygen oxidoreductase (1,2-hydroxylating)
R07704  anthracene,NADH:oxygen oxidoreductase (1,2-hydroxylating)
R07706  nitrobenzene 1,2-dioxygenase
R09159  
R09233  2,4-dinitrotoluene,NADH:oxygen oxidoreductase (4,5-hydroxylating, nitrite-releasing)
Brite
KEGG Orthology (KO) [BR:ko00001]
 09100 Metabolism
  09111 Xenobiotics biodegradation and metabolism
   00627 Aminobenzoate degradation
    K14580  nahAd, ndoC, nbzAd, dntAd; naphthalene 1,2-dioxygenase subunit beta
   00633 Nitrotoluene degradation
    K14580  nahAd, ndoC, nbzAd, dntAd; naphthalene 1,2-dioxygenase subunit beta
   00642 Ethylbenzene degradation
    K14580  nahAd, ndoC, nbzAd, dntAd; naphthalene 1,2-dioxygenase subunit beta
   00626 Naphthalene degradation
    K14580  nahAd, ndoC, nbzAd, dntAd; naphthalene 1,2-dioxygenase subunit beta
   00624 Polycyclic aromatic hydrocarbon degradation
    K14580  nahAd, ndoC, nbzAd, dntAd; naphthalene 1,2-dioxygenase subunit beta
Enzymes [BR:ko01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.12  With NADH or NADPH as one donor, and incorporation of two atoms of oxygen into the other donor
    1.14.12.12  naphthalene 1,2-dioxygenase
     K14580  nahAd, ndoC, nbzAd, dntAd; naphthalene 1,2-dioxygenase subunit beta
    1.14.12.23  nitroarene dioxygenase
     K14580  nahAd, ndoC, nbzAd, dntAd; naphthalene 1,2-dioxygenase subunit beta
    1.14.12.24  2,4-dinitrotoluene dioxygenase
     K14580  nahAd, ndoC, nbzAd, dntAd; naphthalene 1,2-dioxygenase subunit beta
Dioxygenases [br01602.html]
 Dioxygenases in aromatic ring cleavage
  K14580
Other DBs
GO: 0018625
Genes
PPI: ND056(nahAd)
PFK: PFAS1_28615
PSC: A458_06720
PSTU: UIB01_22630
PBM: CL52_14615
ALT: ambt_17890
RMN: TK49_07955
BMK: DM80_1444(ndoC)
PARB: CJU94_38655
PNA: Pnap_2484
AJS: Ajs_3093
AG: AAB09767(dntAd) AAL76203(nbzAd) AAO64275(nahAd) ADQ90223(cnbAd) AGH09227(mntAd)
 » show all
Reference
PMID:8486285
  Authors
Simon MJ, Osslund TD, Saunders R, Ensley BD, Suggs S, Harcourt A, Suen WC, Cruden DL, Gibson DT, Zylstra GJ
  Title
Sequences of genes encoding naphthalene dioxygenase in Pseudomonas putida strains G7 and NCIB 9816-4.
  Journal
Gene 127:31-7 (1993)
DOI:10.1016/0378-1119(93)90613-8
Reference
  Authors
Dennis JJ, Zylstra GJ
  Title
Complete sequence and genetic organization of pDTG1, the 83 kilobase naphthalene degradation plasmid from Pseudomonas putida strain NCIB 9816-4.
  Journal
J Mol Biol 341:753-68 (2004)
DOI:10.1016/j.jmb.2004.06.034
  Sequence
Reference
  Authors
Lessner DJ, Johnson GR, Parales RE, Spain JC, Gibson DT
  Title
Molecular characterization and substrate specificity of nitrobenzene dioxygenase from Comamonas sp. strain JS765.
  Journal
Appl Environ Microbiol 68:634-41 (2002)
DOI:10.1128/AEM.68.2.634-641.2002
  Sequence
Reference
PMID:8759857
  Authors
Suen WC, Haigler BE, Spain JC
  Title
2,4-Dinitrotoluene dioxygenase from Burkholderia sp. strain DNT: similarity to naphthalene dioxygenase.
  Journal
J Bacteriol 178:4926-34 (1996)
DOI:10.1128/JB.178.16.4926-4934.1996
  Sequence

KEGG   ORTHOLOGY: K14579
Entry
K14579                      KO                                     
Symbol
nahAc, ndoB, nbzAc, dntAc
Name
naphthalene 1,2-dioxygenase subunit alpha [EC:1.14.12.12 1.14.12.23 1.14.12.24]
Pathway
map00624  Polycyclic aromatic hydrocarbon degradation
map00626  Naphthalene degradation
map00627  Aminobenzoate degradation
map00633  Nitrotoluene degradation
map00642  Ethylbenzene degradation
map01100  Metabolic pathways
map01120  Microbial metabolism in diverse environments
map01220  Degradation of aromatic compounds
Module
M00534  Naphthalene degradation, naphthalene => salicylate
Reaction
R02968  naphthalene,NADH:oxygen oxidoreductase (1,2-hydroxylating)
R05422  fluorene,NADH:oxygen oxidoreductase
R05423  
R05424  
R05425  
R05426  
R05427  
R06909  naphthalene,NADH:oxygen oxidoreductase (1,2-hydroxylating)
R06930  naphthalene,NADH:oxygen oxidoreductase (1,2-hydroxylating)
R06937  naphthalene,NADH:oxygen oxidoreductase (1,2-hydroxylating)
R07704  anthracene,NADH:oxygen oxidoreductase (1,2-hydroxylating)
R07706  nitrobenzene 1,2-dioxygenase
R09159  
R09233  2,4-dinitrotoluene,NADH:oxygen oxidoreductase (4,5-hydroxylating, nitrite-releasing)
Brite
KEGG Orthology (KO) [BR:ko00001]
 09100 Metabolism
  09111 Xenobiotics biodegradation and metabolism
   00627 Aminobenzoate degradation
    K14579  nahAc, ndoB, nbzAc, dntAc; naphthalene 1,2-dioxygenase subunit alpha
   00633 Nitrotoluene degradation
    K14579  nahAc, ndoB, nbzAc, dntAc; naphthalene 1,2-dioxygenase subunit alpha
   00642 Ethylbenzene degradation
    K14579  nahAc, ndoB, nbzAc, dntAc; naphthalene 1,2-dioxygenase subunit alpha
   00626 Naphthalene degradation
    K14579  nahAc, ndoB, nbzAc, dntAc; naphthalene 1,2-dioxygenase subunit alpha
   00624 Polycyclic aromatic hydrocarbon degradation
    K14579  nahAc, ndoB, nbzAc, dntAc; naphthalene 1,2-dioxygenase subunit alpha
Enzymes [BR:ko01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.12  With NADH or NADPH as one donor, and incorporation of two atoms of oxygen into the other donor
    1.14.12.12  naphthalene 1,2-dioxygenase
     K14579  nahAc, ndoB, nbzAc, dntAc; naphthalene 1,2-dioxygenase subunit alpha
    1.14.12.23  nitroarene dioxygenase
     K14579  nahAc, ndoB, nbzAc, dntAc; naphthalene 1,2-dioxygenase subunit alpha
    1.14.12.24  2,4-dinitrotoluene dioxygenase
     K14579  nahAc, ndoB, nbzAc, dntAc; naphthalene 1,2-dioxygenase subunit alpha
Dioxygenases [br01602.html]
 Dioxygenases in aromatic ring cleavage
  K14579
Other DBs
GO: 0018625
Genes
PPI: ND055(nahAc)
PFK: PFAS1_28610
PSC: A458_06725
PSTU: UIB01_22625
PBM: CL52_14610
ALT: ambt_17895
CYQ: Q91_2226
CZA: CYCME_2544
CYY: CPC19_01670
FCE: JN531_005655
BMK: DM80_1443(ndoB)
BFN: OI25_3057(ndoB)
PNA: Pnap_2485
AJS: Ajs_3092
NAR: Saro_3901
AG: AAB09766(dntAc) AAL76202(nbzAc) AAO64274(nahAc) ADQ90222(cnbAc) AGH09226(mntAc)
 » show all
Reference
PMID:8486285
  Authors
Simon MJ, Osslund TD, Saunders R, Ensley BD, Suggs S, Harcourt A, Suen WC, Cruden DL, Gibson DT, Zylstra GJ
  Title
Sequences of genes encoding naphthalene dioxygenase in Pseudomonas putida strains G7 and NCIB 9816-4.
  Journal
Gene 127:31-7 (1993)
DOI:10.1016/0378-1119(93)90613-8
Reference
  Authors
Dennis JJ, Zylstra GJ
  Title
Complete sequence and genetic organization of pDTG1, the 83 kilobase naphthalene degradation plasmid from Pseudomonas putida strain NCIB 9816-4.
  Journal
J Mol Biol 341:753-68 (2004)
DOI:10.1016/j.jmb.2004.06.034
  Sequence
Reference
  Authors
Lessner DJ, Johnson GR, Parales RE, Spain JC, Gibson DT
  Title
Molecular characterization and substrate specificity of nitrobenzene dioxygenase from Comamonas sp. strain JS765.
  Journal
Appl Environ Microbiol 68:634-41 (2002)
DOI:10.1128/AEM.68.2.634-641.2002
  Sequence
Reference
PMID:8759857
  Authors
Suen WC, Haigler BE, Spain JC
  Title
2,4-Dinitrotoluene dioxygenase from Burkholderia sp. strain DNT: similarity to naphthalene dioxygenase.
  Journal
J Bacteriol 178:4926-34 (1996)
DOI:10.1128/JB.178.16.4926-4934.1996
  Sequence

KEGG   ORTHOLOGY: K14578
Entry
K14578                      KO                                     
Symbol
nahAb, nagAb, ndoA, nbzAb, dntAb
Name
naphthalene 1,2-dioxygenase ferredoxin component
Pathway
map00624  Polycyclic aromatic hydrocarbon degradation
map00626  Naphthalene degradation
map00627  Aminobenzoate degradation
map00633  Nitrotoluene degradation
map00642  Ethylbenzene degradation
map01100  Metabolic pathways
map01120  Microbial metabolism in diverse environments
map01220  Degradation of aromatic compounds
Module
M00534  Naphthalene degradation, naphthalene => salicylate
M00638  Salicylate degradation, salicylate => gentisate
Reaction
R02968  naphthalene,NADH:oxygen oxidoreductase (1,2-hydroxylating)
R05422  fluorene,NADH:oxygen oxidoreductase
R05423  
R05424  
R05425  
R05426  
R05427  
R06909  naphthalene,NADH:oxygen oxidoreductase (1,2-hydroxylating)
R06930  naphthalene,NADH:oxygen oxidoreductase (1,2-hydroxylating)
R06937  naphthalene,NADH:oxygen oxidoreductase (1,2-hydroxylating)
R07704  anthracene,NADH:oxygen oxidoreductase (1,2-hydroxylating)
R07706  nitrobenzene 1,2-dioxygenase
R07709  salicylate,NADH:oxygen oxidoreductase (5-hydroxylating)
R07710  salicylate,NADPH:oxygen oxidoreductase (5-hydroxylating)
R09159  
R09233  2,4-dinitrotoluene,NADH:oxygen oxidoreductase (4,5-hydroxylating, nitrite-releasing)
Brite
KEGG Orthology (KO) [BR:ko00001]
 09100 Metabolism
  09111 Xenobiotics biodegradation and metabolism
   00627 Aminobenzoate degradation
    K14578  nahAb, nagAb, ndoA, nbzAb, dntAb; naphthalene 1,2-dioxygenase ferredoxin component
   00633 Nitrotoluene degradation
    K14578  nahAb, nagAb, ndoA, nbzAb, dntAb; naphthalene 1,2-dioxygenase ferredoxin component
   00642 Ethylbenzene degradation
    K14578  nahAb, nagAb, ndoA, nbzAb, dntAb; naphthalene 1,2-dioxygenase ferredoxin component
   00626 Naphthalene degradation
    K14578  nahAb, nagAb, ndoA, nbzAb, dntAb; naphthalene 1,2-dioxygenase ferredoxin component
   00624 Polycyclic aromatic hydrocarbon degradation
    K14578  nahAb, nagAb, ndoA, nbzAb, dntAb; naphthalene 1,2-dioxygenase ferredoxin component
Dioxygenases [br01602.html]
 Dioxygenases in aromatic ring cleavage
  K14578
Other DBs
COG: COG2146
Genes
EBT: EBL_c34290(ndoA)
KAS: KATP_22610
KLU: K7B04_17415
PSD: DSC_14870
PPT: PPS_2607
PPI: ND054(nahAb)
PPUD: DW66_2865
PPJ: RK21_02167
PFK: PFAS1_28605
PMAO: PMYSY11_1632
PTAE: NCTC10697_01911(nahAb)
PSE: NH8B_2003
RSO: RSc1088(nagAb)
RSE: F504_1059
RSL: RPSI07_2303(doxA)
RSM: CMR15_20207(doxA)
REH: H16_A1631(nagI)
BMK: DM80_1442(ndoA)
BUB: BW23_5817(ndoA)
BGU: KS03_3915(ndoA)
BXE: Bxe_C0940
BXB: DR64_7510(ndoA) DR64_8472
BFN: OI25_3048(ndoA)
PDIO: PDMSB3_0226(doxA)
PPNO: DA70_21380
PPNM: LV28_08940
PPUL: RO07_03170
PSPU: NA29_24080
PAPI: SG18_03360
BPAR: BN117_1348(ndoA)
BPA: BPP2189(ndoA)
BBH: BN112_1870(ndoA)
BBR: BB1586(ndoA)
BBM: BN115_1540(ndoA)
BBX: BBS798_1545(ndoA)
BPT: Bpet2806
AXX: ERS451415_00955(ndoA_1) ERS451415_02890(ndoA_2)
POL: Bpro_0985
AJS: Ajs_3091
ACIQ: ACDW_45550
AAV: Aave_0167
AAA: Acav_0198
CTES: O987_21885
LIM: L103DPR2_01956(ndoA)
LIH: L63ED372_02713(ndoA)
HYB: Q5W_18510
HPSE: HPF_02900(nagAb)
LCH: Lcho_0795
UND: UNDKW_4639(ndoA)
APET: ToN1_03800
AZO: azo2514(nagAb)
AOA: dqs_2671
AZA: AZKH_1938
BEL: BE61_33690(hcaC)
TALZ: RPMA_26285
MIND: mvi_47130
MSL: Msil_1467
JAN: Jann_3956
SHUM: STHU_47060
TMO: TMO_a0552(doxA)
AG: AAA25905(nahAb) AAB09765(dntAb) AAL76201(nbzAb) AGH09225(mntAb)
 » show all
Reference
PMID:8486285
  Authors
Simon MJ, Osslund TD, Saunders R, Ensley BD, Suggs S, Harcourt A, Suen WC, Cruden DL, Gibson DT, Zylstra GJ
  Title
Sequences of genes encoding naphthalene dioxygenase in Pseudomonas putida strains G7 and NCIB 9816-4.
  Journal
Gene 127:31-7 (1993)
DOI:10.1016/0378-1119(93)90613-8
Reference
  Authors
Dennis JJ, Zylstra GJ
  Title
Complete sequence and genetic organization of pDTG1, the 83 kilobase naphthalene degradation plasmid from Pseudomonas putida strain NCIB 9816-4.
  Journal
J Mol Biol 341:753-68 (2004)
DOI:10.1016/j.jmb.2004.06.034
  Sequence

KEGG   ORTHOLOGY: K14581
Entry
K14581                      KO                                     
Symbol
nahAa, nagAa, ndoR, nbzAa, dntAa
Name
naphthalene 1,2-dioxygenase ferredoxin reductase component [EC:1.18.1.7]
Pathway
map00624  Polycyclic aromatic hydrocarbon degradation
map00626  Naphthalene degradation
map00627  Aminobenzoate degradation
map00633  Nitrotoluene degradation
map00642  Ethylbenzene degradation
map01100  Metabolic pathways
map01120  Microbial metabolism in diverse environments
map01220  Degradation of aromatic compounds
Module
M00534  Naphthalene degradation, naphthalene => salicylate
M00638  Salicylate degradation, salicylate => gentisate
Reaction
R02968  naphthalene,NADH:oxygen oxidoreductase (1,2-hydroxylating)
R05422  fluorene,NADH:oxygen oxidoreductase
R05423  
R05424  
R05425  
R05426  
R05427  
R06909  naphthalene,NADH:oxygen oxidoreductase (1,2-hydroxylating)
R06930  naphthalene,NADH:oxygen oxidoreductase (1,2-hydroxylating)
R06937  naphthalene,NADH:oxygen oxidoreductase (1,2-hydroxylating)
R07704  anthracene,NADH:oxygen oxidoreductase (1,2-hydroxylating)
R07706  nitrobenzene 1,2-dioxygenase
R07709  salicylate,NADH:oxygen oxidoreductase (5-hydroxylating)
R07710  salicylate,NADPH:oxygen oxidoreductase (5-hydroxylating)
R09159  
R09233  2,4-dinitrotoluene,NADH:oxygen oxidoreductase (4,5-hydroxylating, nitrite-releasing)
Brite
KEGG Orthology (KO) [BR:ko00001]
 09100 Metabolism
  09111 Xenobiotics biodegradation and metabolism
   00627 Aminobenzoate degradation
    K14581  nahAa, nagAa, ndoR, nbzAa, dntAa; naphthalene 1,2-dioxygenase ferredoxin reductase component
   00633 Nitrotoluene degradation
    K14581  nahAa, nagAa, ndoR, nbzAa, dntAa; naphthalene 1,2-dioxygenase ferredoxin reductase component
   00642 Ethylbenzene degradation
    K14581  nahAa, nagAa, ndoR, nbzAa, dntAa; naphthalene 1,2-dioxygenase ferredoxin reductase component
   00626 Naphthalene degradation
    K14581  nahAa, nagAa, ndoR, nbzAa, dntAa; naphthalene 1,2-dioxygenase ferredoxin reductase component
   00624 Polycyclic aromatic hydrocarbon degradation
    K14581  nahAa, nagAa, ndoR, nbzAa, dntAa; naphthalene 1,2-dioxygenase ferredoxin reductase component
Enzymes [BR:ko01000]
 1. Oxidoreductases
  1.18  Acting on iron-sulfur proteins as donors
   1.18.1  With NAD+ or NADP+ as acceptor
    1.18.1.7  ferredoxin---NAD(P)+ reductase (naphthalene dioxygenase ferredoxin-specific)
     K14581  nahAa, nagAa, ndoR, nbzAa, dntAa; naphthalene 1,2-dioxygenase ferredoxin reductase component
Dioxygenases [br01602.html]
 Dioxygenases in aromatic ring cleavage
  K14581
Genes
EBT: EBL_c34260(ndoR)
KAS: KATP_22580
KLU: K7B04_17400
PPI: ND053(nahAa)
PFK: PFAS1_28600
PSC: A458_06735
PSTU: UIB01_22615
PBM: CL52_14600
ALT: ambt_18035
MMW: Mmwyl1_2668
RSO: RSc1091(nagAa)
RSE: F504_1062
RSL: RPSI07_2300(ndoR)
RSM: CMR15_20210(ndoR)
BMK: DM80_1434(ndoR) DM80_1439(ndoR)
BFN: OI25_3043(ndoR)
PPNO: DA70_21365
PPNM: LV28_08955
PPUL: RO07_03185
PSPU: NA29_24095
PAPI: SG18_03375
CABK: NK8_60790
AFQ: AFA_02200
POL: Bpro_0980
PNA: Pnap_2489
AJS: Ajs_3089
ACIQ: ACDW_45610
AAV: Aave_0164
AAA: Acav_0195
LCH: Lcho_0800
TIN: Tint_1781
THI: THI_2205
AZO: azo2517(nagAa)
AOA: dqs_2674
SHZ: shn_02370
MNO: Mnod_0136
RBM: TEF_01260
PSF: PSE_0864
LABT: FIU93_04780(nagAa1)
SGI: SGRAN_2805(thnY)
TMO: TMO_2240(ndoR)
AG: AAA25904(nahAa) AAB09763(dntAa) AAD12606(nagAa) AAL76199(nbzAa) AGH09224(mntAa)
 » show all
Reference
PMID:8486285
  Authors
Simon MJ, Osslund TD, Saunders R, Ensley BD, Suggs S, Harcourt A, Suen WC, Cruden DL, Gibson DT, Zylstra GJ
  Title
Sequences of genes encoding naphthalene dioxygenase in Pseudomonas putida strains G7 and NCIB 9816-4.
  Journal
Gene 127:31-7 (1993)
DOI:10.1016/0378-1119(93)90613-8
Reference
  Authors
Dennis JJ, Zylstra GJ
  Title
Complete sequence and genetic organization of pDTG1, the 83 kilobase naphthalene degradation plasmid from Pseudomonas putida strain NCIB 9816-4.
  Journal
J Mol Biol 341:753-68 (2004)
DOI:10.1016/j.jmb.2004.06.034
  Sequence

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