KEGG   Paracidovorax avenae: Acav_0597
Entry
Acav_0597         CDS       T01445                                 
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
  KO
K03040  DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
Organism
aaa  Paracidovorax avenae
Pathway
aaa03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:aaa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Acav_0597
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:aaa03021]
    Acav_0597
   03400 DNA repair and recombination proteins [BR:aaa03400]
    Acav_0597
Enzymes [BR:aaa01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Acav_0597
Transcription machinery [BR:aaa03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Acav_0597
DNA repair and recombination proteins [BR:aaa03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Acav_0597
SSDB
Motif
Pfam: RNA_pol_A_bac RNA_pol_A_CTD RNA_pol_L RAD51D_N
Other DBs
NCBI-ProteinID: ADX44520
UniProt: F0Q692
Position
636886..637878
AA seq 330 aa
MQTNLLKPKTINVEQLGHNRAKVALEPFERGYGHTLGNAIRRVLLSSMVGYAATEVTIAG
VLHEYSSIDGVQEDVVNILLNLKGVVFKLHNRDEVTLSLRKDGEGVVTARDIQTPHDVEI
VNPDHVIAHLSQGGKLDMQIKVEKGRGYVPGNLRRYADESTKSIGRIVLDASFSPVKRVS
YTVESARVEQRTDLDKLVVEIETNGAITAEDAVRASAKILVEQLAVFAQLEGGELAAFDT
PAGPRGSATFDPILLRPVDELELTVRSANCLKAENIYYIGDLIQRTENELLKTPNLGRKS
LNEIKEVLASRGLTLGMKLENWPPAGLDKR
NT seq 993 nt   +upstreamnt  +downstreamnt
atgcaaaccaatttgctgaaacccaagacgatcaacgtcgagcagctcggacacaaccgc
gccaaggtcgcgctggaacccttcgagcgcggttacgggcacacgctcggcaacgccatc
cgccgcgtgctgctgtcgtccatggtgggttacgcagcaacggaagtgacgatcgccggc
gtgctccatgagtactcgtccatcgacggcgttcaggaagatgtcgtgaacatcctgctg
aacctgaagggcgtcgtgttcaagctccacaaccgcgacgaagtcacgctgagcctgcgc
aaggatggcgagggcgtggtcaccgcgcgcgacatccagacgccgcacgacgttgaaatc
gtcaatcccgaccacgtgatcgcccacctgtcgcaaggcggcaagctggacatgcagatc
aaggtggagaagggccgtggctatgtgccgggcaacctgcgccgctatgccgacgaatcg
accaagtcgatcggccgcatcgtgctggacgcatccttctcgccggtcaagcgtgtgagc
tacaccgtcgagagcgcccgcgtcgagcagcgcacggacctggacaagctggtggtcgag
atcgagacgaatggtgcgatcaccgcggaagacgccgtgcgcgcctccgccaagatcctg
gtcgagcagctcgctgtcttcgcacagctcgagggcggcgaactggccgcattcgatacg
ccggccggcccgcgcggcagcgccacgttcgacccgatcctgctgcgccccgtggacgag
ctggaactcaccgtgcgttccgccaactgcctgaaggccgagaacatctactacatcggc
gacctgatccagcgtaccgagaacgaactgctcaagaccccgaacctgggccgcaagtcg
ctcaacgagatcaaggaagtgctggcttcgcgcggcctgacgctgggcatgaagctcgag
aactggcccccggctggcctcgacaagcgctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (15)   

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