KEGG   Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446: Aaci_2718
Entry
Aaci_2718         CDS       T00985                                 
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
aac  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446
Pathway
aac03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:aac00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Aaci_2718
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:aac03021]
    Aaci_2718
   03400 DNA repair and recombination proteins [BR:aac03400]
    Aaci_2718
Enzymes [BR:aac01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Aaci_2718
Transcription machinery [BR:aac03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Aaci_2718
DNA repair and recombination proteins [BR:aac03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Aaci_2718
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Apocytochr_F_C Peptidase_M23 RPOC_hybrid
Other DBs
NCBI-ProteinID: ACV59722
UniProt: C8WTY0
Position
complement(2782192..2785830)
AA seq 1212 aa
MFDLNNFEFMKIGLASPEKIRSWSHGEVKKPETINYRTLRPEKEGLFCEKIFGPTRDWEC
HCGKYKRIRYKGVVCDRCGVEVTRSKVRRERMGHIELAAPVSHIWFFKGIPSRMGLILDM
SPRALEEVIYFASYVVTDPGDTPLEKKQLLSEKEYRSYREKYGYAFKAGMGAEAIRTLLQ
EIDLDREVEILREELRTAQGQRRNRAIKRLEVIEAFRQSGNKPSWMILEALPVIPPDLRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELRMYQCGLPKE
MALELFKPFVMKELVARGLAHNIKSAKRKVERVSDEVWDVVEDVIKQHPVLLNRAPTLHR
LGIQAFEPVLVEGRAIKLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLAAHNIL
NPKDGKPVVTPTQDMVLGSYYLTIEREGAPGEGKVFASVSEVEYALHQRLITLQTRIALP
AKAVGKTSFTEKQANALLITTPGKLIFNSIFPSDFPYLNSAAKSNLLGGPPDDTFIFEKG
VDIREAILKRPIPKAVIKKDLGNILAECFRRYGTTMTAEILDKVKRLGFHYSTLAGITIS
ISDIVVPEEKKRIIAEAEAKEHKLKLQYRRGLITEEEQYVTFSQIWSEAKEQISSILMES
MDQFNPIYMMATSGARGSNSQITQLAGMRGLMANPSGEIIQLAIKSNFREGLSVLEYFIS
THGARKGLADTALRTADSGYLTRRLVDVAQDTIVREHDCGTDKGLRVMEIRDGSEVIEDL
RDRLEGRVAFQDVYHPETGEKIVGKNEMIDEEAADKIVAAGIKEVTIRSVLTCRTRHGVC
QLCYGRNLATGDMVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVQEL
FEARNPKGQAVIAEFDGVITDIREGKDKREIELTGESETKTYQIPYGSRIRVSVGQQLEA
GEELTEGSVDPKEMLRVKGLQGVQNYLLREVQRVYRLQGVDINDKHIEVMIRQMLRKVRI
LDAGDTDLLPGTYVDLFEYEAANREALLSGKEPAVARPALLGITKASLETDSFLSAASFQ
ETTRVLTEAAIKGKVDRLLGLKENVIIGKLIPAGTGMVRYRNVEPEVVRPGDAEAAATGE
EVAETEAVSSAE
NT seq 3639 nt   +upstreamnt  +downstreamnt
ttgtttgacctgaacaactttgagttcatgaagattgggctcgcgtcgccggaaaagatc
cgctcctggtcgcacggcgaggtgaagaagccggagaccatcaactaccgcacgctccgc
ccggagaaggaggggctgttctgcgagaagatcttcggcccgacgcgggactgggagtgc
cactgcggcaagtacaagcggatccgctacaagggtgtcgtgtgtgaccgctgcggcgtt
gaggtcacgcggtccaaggtgcgccgcgagcgcatggggcacatcgagctggcggcgccc
gtctcgcacatctggttcttcaagggcatcccgagccgcatggggctcatcctcgacatg
tcgccgcgggcgctcgaggaggtcatctacttcgcgtcgtacgtcgtgaccgatcccggc
gatacgccgctcgagaaaaagcagctgctctcggagaaggagtaccggtcctaccgcgag
aagtacggctacgcgttcaaagcgggcatgggcgccgaggccatccgcacgctcctgcag
gagatcgatcttgaccgcgaggttgagatcctgcgcgaggagctgcgcacggcccaaggg
cagcggcgcaaccgggccatcaagcgcctagaggtcatcgaggcgttccgtcagtccggc
aacaagccgagctggatgatcctcgaggcgctgccggtcattccgccggacctgcgtccc
atggtgcagctggacggcggccgcttcgccacgtccgacctgaacgatctgtaccgccgc
gtcatcaaccgcaacaaccgcctgaagcgactgctcgatctcggcgcgcccgacatcatc
gtgcagaacgagaagcggatgttgcaggaggctgtggacgcgctgatcgacaacggccgg
cgtggacgcccggtcacaggacccggcaatcggccgctcaagagcctgtcgcacatgctg
aagggcaagcagggccgcttccgccagaacctgctcgggaagcgcgtcgactactccggc
cgatccgtcatcgtggtggggcccgagctgcgcatgtaccagtgcggcctgccgaaagag
atggcgcttgagttgttcaagccgttcgtcatgaaggaactggtggcgcgcgggctcgcg
cacaacatcaagagcgcgaagcgcaaggtcgagcgcgtgtcggatgaagtgtgggacgtc
gtcgaggacgtcatcaaacagcaccctgtgctgttgaaccgcgcgccgacgctgcaccgt
ctgggcattcaggcgttcgagcccgtccttgtcgaagggcgcgccatcaagctgcatcct
ctcgtctgcacggcgtacaacgcggatttcgacggcgaccagatggccgtgcacgtgccg
ctttccgccgaggcgcaggcggaggcgcgcctgctgatgcttgccgcgcacaacatcctg
aacccgaaggacggcaagccggtcgtgacgccgacgcaggacatggtgctcggatcctac
tatttgaccatcgagcgcgagggcgcgcccggcgaaggcaaggtctttgcgtccgtgtct
gaggtggagtacgcgctccatcagcggctcatcacgctgcagacgcgcatcgcgctgccg
gccaaggcggtcggcaagacgtcgttcacggagaagcaggcgaatgcgctcctgatcacg
acgccgggcaagctcatcttcaacagcatcttcccgtccgacttcccgtatctgaactct
gcggcgaagtccaacctgctcggcggtccgccggacgacacgttcatcttcgagaagggc
gtggacatccgcgaggcgattctcaagcgcccgatcccgaaggcggtcatcaagaaggat
ctgggcaacattctggccgaatgcttccgccgctatggcacgacgatgacggccgagatc
ctcgacaaggtgaagcggctcgggttccactattcgacgctcgccggtatcaccatctcg
atcagcgacatcgtggtgcccgaagagaagaagcgcatcatcgccgaggcggaggcgaag
gaacacaagctgaagcttcaataccggcgcggtctcatcacggaagaggagcagtacgtg
accttcagccagatctggtcggaggccaaggagcagatctcgtccatcctcatggagagc
atggaccagttcaatcccatttatatgatggccacttccggtgcgcgcggttcgaactcg
cagatcacgcagctcgcgggcatgcgcgggctcatggcgaacccgtcgggcgagatcatc
cagctggccatcaagtcgaacttccgcgagggcctgtcggtgttggagtacttcatctcg
acccacggcgcgcgcaagggcctcgctgacacggcgctgcgcacggcggactcgggttat
ctcacgcgccgcctcgtcgacgtggcgcaggacacgattgtgcgtgagcacgactgcggc
accgacaagggcctgcgggtcatggagatccgcgatggcagcgaggtcatcgaagacttg
cgcgatcgcctcgaaggtcgtgtcgcgttccaggatgtgtatcacccggagacgggcgag
aagatcgtcggcaagaacgagatgatcgacgaggaagccgcggacaagattgtcgcggcg
ggcatcaaagaggttaccatccgctccgtcctgacctgtcgcacgcgtcacggggtgtgc
cagctctgctacggccgcaacttggcgacgggcgatatggtcgaggtgggcgaggcggtc
ggcatcatcgccgcgcagtccatcggcgagccgggtacgcagctcaccatgcgcacgttc
cacacgggcggcgtggcgggtgacgacatcacccagggtctgccgcgcgtgcaggaactc
tttgaggcgcgcaacccgaaaggtcaggccgtgatcgcggagttcgacggcgtcatcacc
gacatccgcgagggcaaggacaagcgcgaaatcgagctcacgggcgagagcgagacgaag
acgtatcagatcccgtacgggtcgcggattcgggtgagcgtgggccagcagttggaggcc
ggcgaggagctcacggagggctcggtcgatccgaaggagatgctgcgcgtcaagggcctg
cagggcgtgcaaaactacctgctgcgcgaggtgcagcgcgtttaccgcctgcagggcgtg
gacatcaacgacaagcacatcgaggtcatgatccggcagatgttgcgcaaagttcgcatc
ctcgacgctggagacacggatctcctgccggggacgtacgtggatctcttcgagtacgaa
gccgccaaccgggaggcacttctctcgggcaaggagcctgcggtggcgcgcccggcgctg
cttgggatcaccaaggcgtcgcttgagacggattcgttcctctcggccgcgtcattccaa
gagacgacccgcgtgctcaccgaggcggccatcaagggcaaggtagatcgcctgctcggc
ctgaaggagaacgtgatcatcggcaagttgatcccggcgggcacgggcatggtgaggtac
cgcaacgtggagccggaggtcgtgcgcccgggcgacgcagaggcggctgcgacaggcgaa
gaggttgccgaaaccgaggctgtgtcgagcgcggagtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (13)   
   KEGG ORTHOLOGY (1)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (29)   

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