KEGG   Aureococcus anophagefferens: AURANDRAFT_72075
Entry
AURANDRAFT_72075  CDS       T04134                                 
Name
(RefSeq) hypothetical protein
  KO
K06100  symplekin
Organism
aaf  Aureococcus anophagefferens
Pathway
aaf03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:aaf00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    AURANDRAFT_72075
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:aaf03021]
    AURANDRAFT_72075
   03019 Messenger RNA biogenesis [BR:aaf03019]
    AURANDRAFT_72075
Transcription machinery [BR:aaf03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     AURANDRAFT_72075
Messenger RNA biogenesis [BR:aaf03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     AURANDRAFT_72075
    U7-dependent histone pre-mRNA processing factors
     AURANDRAFT_72075
SSDB
Motif
Pfam: Symplekin_C Cohesin_HEAT
Other DBs
NCBI-GeneID: 20228534
NCBI-ProteinID: XP_009039243
JGI: Auran1_72075
UniProt: F0YFT2
Position
Unknown
AA seq 2010 aa
MRSIILALAARVAAGVDCSSWDGDRVGCSGCVASGECVFDEVTGTCGTVADTENCPAGDF
GPTGGEECPATCFGDTCDAWATKATSCAELEEWGCDCFGCACAVEDGDKNDDKGGDWGDK
NDDKGGDWGDDKDWGDKDGDWGDKDGYTAAPTATLTGSWRVESLGNAGGATRYYWVYAPD
AAEYSGMMLFFHGAGGGASVRHAYRVAENADTYGFVGVVPIGSPGDGEDGGKRRLAESDD
TECCYYWNVDVADGVDDVGFVHAVVAAVAEDYAVAADRPVIALGFSNGAAMSELLGCHDS
HDLWVAHVGVHYRPESDWPSTCQSKTSACPEWNAVGSEDWFLDGLSPTPTEGILAQFEAS
RDAAGCPEEAARQDGECYEYASCPSLGRLCVYDGVIHMITDTMTESAWTYLTGPGLSCGE
SAATTQDGWCADSGVQLCKMLCETPDCPTGQCAMRVGTCCDYTCAYATRDGGLAFGEFAE
NATTTEAFAAECPTTCFFDTCDAWATAETTCADLEREYDCDCTGCACDGTGSVKDDDKGG
DKDGDWGDKDGYTAAPTATLTGSWRVESLGHAGGATRAYWVYAPDAAEYSGMMLFFHGAD
GGASVRHAYRVAENADTYGFVGVVPIGSPGDGEDGGKGDGGKRRLEESGTECCYHWNVDD
ADGVDEVSFVHAVVAEVAADYAVGADKPVIALGFSNGAAMSELLGCHDSHDLWVAHVGVH
YHPEADWPSTCQSKTSACPEWNAVGTEDEFLDGLSPSPTEGILAQFEAGRDAAGCPEEAA
RASRGGECHDYPSCPSLGVLCVYDGVIHMITDTMTESAWTYLTGPGRSCGESSTTTTKAK
KDRCAKKTKRKKCTGNCVWKRGQCVASSGVSCKKQKKEKKCTKAGCAWNAKKEKCADCAK
QKKSKKCKKAGCKWKKKKEKCRAKAVRHQPLMVAFIVAGSRVARQLASAALLTCAGATAF
KCAMASVIAAFGPAATTAAPTMDAVYRQARALLESAALASGKEEKVSKIALLVELCVHRA
DAALVDELVTGVSNFTTDRSSSVRRAVLDFLERVVVGSEHGGDACASRAVETAAYLACDE
HEGTATRALGVAAVILGAPKFGAFELADVSRERLVAAVDGDARKQQSGAAPGAAYLSAAA
ETLLALVLRDCRHETGTRPSAATKRGTAALAAAAKSGASQQLLDCCAVALAAAFGLVHKE
LVAAVIAALEAAPEAAAATAVAALHAAETARRAGGAGAVAAAANKLEAALRRGGKGEAAD
EALDCARGGRPLPPRPPPEKRGRDEPSDPRAAKRRKRDPRARRERSEAAVPRRAEDLEED
REDAAPDDDDDDDDDDPSMPPPPPKGADAPLTAAAAGSVRSQPPSAPGGRPTLKSSANAL
SDAHARAMRAAAAARCVAAPPELVARERLYATRDAVVSRLARFEVDRGDVEGGPGAVAAT
LARAVADKKGRRDGVELALRVLFEAYARERALVNGDACAADDPRRRAYDGALLTLLAALR
DGLESSERALFTDVVLGAPRLPGAAVDFLVRCCDANDAPAAGVALGLTALRDLAFHRPSA
RGACLARCLDLTRRADVAAEVREKAVRLASNQLWARPSLRDAVVAHATASVAGAAKPTGR
KAEGDDERAAALEGVRRELALGVALCVKDVSLVPVLLRNAAATAGRADDSVLVQEAVALE
LPRLAPALATLHGPEPTLATAAQALKSEAGDAVDADRSKATEALLLSLLEALAGPGTKRT
PGLWDGAAKLREAVQASRAAASASDDTVRFLVPALGSASAAQFFDALPALLLHLDDAALA
AAFRRAVAATLSATNKVSGAAATLGAAELVVGLHGVDDKVVPVKRVTEALNVCLAARDVF
GALCLRDALDKMTDVGADGDDKARLAKLPQLLMRTCILAVKTYPAQLSSFVASTVLVRLV
KMKVWTHGALWKGFMMCCGLLASPTEDHSHTCFAAALALPAPQLSHLLKLAPKLKLPLKR
HAEKLIKARDLGGVNPPSLKLLGLEAPAAN
NT seq 6033 nt   +upstreamnt  +downstreamnt
atgcgctcgatcatcctcgctctcgcggctcgggtcgcggccggcgtcgactgctcgtcc
tgggacggcgaccgtgtcggatgctcgggatgcgtcgcgagcggcgagtgcgtcttcgac
gaggtcacgggaacctgcggaaccgtggcggacacggagaactgccccgccggcgacttc
gggcccacgggcggcgaggaatgccccgcgacgtgcttcggagatacgtgcgacgcgtgg
gcgacgaaggccacctcgtgcgccgagctcgaagagtggggctgcgactgcttcgggtgc
gcgtgtgcggtcgaagacggcgacaagaacgacgacaagggcggagactggggcgacaag
aacgacgacaagggcggagattggggcgacgacaaggattggggcgacaaggacggcgac
tggggcgacaaggacggctacacggccgcgccgacggcgacgctgacgggctcgtggcgc
gtcgagagtctggggaacgccggcggcgcgacgcgctactactgggtctacgcgcccgac
gccgcggagtactcgggcatgatgctcttcttccacggcgcgggcggcggcgcgtccgtg
cgccacgcgtaccgcgtcgccgagaacgccgacacgtacggcttcgtcggcgtcgtgccg
atcggcagccccggcgacggcgaggacggcggcaagcgccggctggcggagagcgacgat
acggagtgctgctattactggaacgtcgacgtcgcggacggcgtggacgacgtcggcttc
gtccacgcggtcgtcgcggcggtcgcggaagactacgccgtcgccgccgacaggcccgtc
atcgctctcggcttctcgaacggggcggccatgtcggagctcctcggctgccacgatagc
cacgatttgtgggtcgcgcacgtcggcgtgcactaccgtccggaatcggactggccgtcg
acgtgccagtcgaagacgtcggcatgccccgagtggaacgccgtcggctccgaggactgg
ttcctcgacggcctgtcgccgacgccgacggagggcatcctggcccagttcgaggcgagc
cgcgacgccgcgggctgccccgaggaggcggcgcgccaggacggcgagtgctacgaatac
gcgagctgtccgtcgctggggcggctctgcgtctacgacggcgtcattcacatgatcacg
gacacgatgacggagtccgcctggacctatttgacgggccccgggctcagctgcggcgaa
tccgcggccacgacgcaggacggatggtgcgcggactccggcgtgcagctctgcaagatg
ctgtgcgagacgccggactgcccgaccggccaatgcgcgatgcgcgtcggcacctgctgc
gactacacgtgcgcctacgcgactcgcgacggcgggttggccttcggcgagttcgcggag
aacgcgacgacgaccgaggcgttcgccgccgagtgcccgacgacgtgcttcttcgacacg
tgcgacgcctgggcgacggcggagacgacgtgcgcggacctcgagcgcgagtacgactgc
gactgcaccggctgcgcgtgcgacggcaccggcagcgtcaaggacgacgataagggcggc
gacaaggacggcgactggggcgacaaggacggctacacggcggcgccgacggcgacgctg
acgggctcgtggcgcgtcgagagcctcgggcacgccggcggcgcgacgcgcgcctactgg
gtctacgcgccggacgccgcggagtactcgggcatgatgctcttcttccacggcgcggac
ggaggcgcgtccgtgcgccacgcgtaccgcgtcgccgagaacgccgacacgtacggcttc
gtcggcgtcgtgccgatcggcagccccggcgacggcgaggacggcggcaagggcgacggc
ggcaagcgccggctggaggagtccggcacggagtgctgctatcactggaacgtcgacgac
gcggacggcgtggacgaggtcagcttcgtccacgcggtcgtcgcggaggtcgcggcggac
tacgccgtcggcgcggacaagcccgtgatcgcgctcggcttctcgaacggggcggccatg
tcggagctcctcggctgccacgatagccacgatttgtgggtcgcgcacgtcggcgtccac
taccaccccgaggccgactggccgtcgacgtgccagtcgaagacgtcggcgtgccccgag
tggaacgccgtcggcaccgaggacgagttcctcgacggcctgtcgccgtcgccgacggag
ggcatcctggcccagttcgaggcgggccgcgacgccgcgggctgccccgaggaggccgcg
cgcgcgagccgaggcggcgagtgccacgactatccgagctgcccgtccctcggcgtgctc
tgcgtctacgacggcgtcattcacatgatcacggacacgatgacggagtccgcttggacc
tatctgacgggccccgggcgcagctgcggcgaatcctcgacgacgacgacgaaggccaag
aaggaccggtgcgcgaagaagacgaagcggaaaaaatgcacggggaactgcgtgtggaaa
cgggggcagtgcgtggcctcctcgggagtctcctgcaagaagcagaagaaggaaaagaag
tgcaccaaggccggctgcgcgtggaacgcgaagaaggagaagtgcgcggactgcgcgaag
cagaagaaatccaaaaagtgcaaaaaggcgggctgcaagtggaagaagaagaaggagaag
tgccgagcgaaggccgtgcgccaccagcccttgatggtcgccttcatcgtcgccgggtcc
cgcgtcgcgaggcagctcgcgagcgcggcgttgctgacgtgcgcgggcgcgacggctttt
aaatgcgcgatggcttcggtcatcgcggcttttgggcctgcggccacaacagcagcacca
accatggacgcggtctaccgccaggcgcgcgccttgctcgagagcgcggcgctcgcgtcg
ggcaaggaggagaaggtgtcgaagatcgcgctgctggtggagctctgcgtgcaccgcgcc
gacgcggcgctcgtcgacgagctcgtcacgggcgtgtcgaacttcacgacggaccggtcg
tcgtccgtgcggcgcgccgtgctcgacttcctcgagcgcgtcgtcgtcgggagcgagcac
ggcggcgacgcgtgcgcgtcgcgcgccgtcgagacggccgcgtacctcgcctgcgacgag
cacgagggcacggcgacgcgcgccctgggcgtcgccgccgtcatcctcggcgcgcccaag
ttcggcgccttcgagctcgcggacgtgagccgcgagcgcctcgtcgcggccgtcgacggc
gacgcgcgaaagcagcagtcgggcgccgcgcccggcgcggcctacctgtccgccgcggcc
gaaacgctactggccctcgtgctccgggactgccgccacgagacggggacgcggccgtcc
gcggcgacgaagcggggcaccgcggcgctcgcggccgcggcgaaaagcggcgcgtcccaa
cagctcctcgactgctgcgccgtcgcgctcgccgcggccttcggcctcgtccacaaggag
ttggtcgccgccgtcatcgccgccctcgaggcggcgcccgaggccgccgcggcgacggcc
gtcgcggcgctccacgcggccgagaccgcgcggcgcgcgggcggcgcgggcgcggtcgcc
gcggcggcgaacaagctcgaggccgcgctccgccgcggcggcaagggcgaggcggccgac
gaggcgttggactgcgcgcgcgggggccggccgctgccgccgcggccgccgccggagaag
cgcggccgcgacgagccctcggacccgcgcgcggcgaagcggcggaagcgcgacccgcgc
gcgcggcgcgagcggtccgaggcggcggtgccgcggcgcgccgaggatttggaggaggac
cgggaggacgcggcgccggacgacgacgacgacgacgacgacgacgacccgtcgatgccg
ccgccgccgcccaagggcgcggacgcgccgctcacggccgcggccgcgggcagcgtgcgg
tcccagccgccgtcggcccccggcgggcggccgaccctgaaatcgagcgccaacgcgctg
agcgacgcgcacgcgcgggccatgcgcgcggcggccgccgctcggtgcgtcgccgcgccg
ccggagctcgtcgcgcgcgagcggctctacgcgacgcgcgacgccgtcgtgagccgcctc
gcgcgcttcgaggtcgaccgcggcgacgtcgagggcgggccgggcgccgtcgcggcgacg
ctggccagggccgtcgcggacaagaagggccgccgcgacggcgtcgagctcgcgctccgc
gtgctcttcgaggcctacgcgcgggagcgggcgctggtgaacggcgatgcatgcgccgcc
gacgacccgcggcgccgcgcctacgacggcgcgctgctgacgctgctcgcggcgctccgc
gacggcctcgagagctcggagcgcgcgctcttcacggacgtcgtgttgggggcgccgcgg
ctgcccggcgcggccgtcgacttcctcgtgcgctgctgcgacgcaaacgacgcgccggcg
gcgggcgtcgcgctggggctcacggcgctccgggacctcgcgttccaccggccctcggcc
cgcggcgcgtgcctcgcgcggtgcctggacctgacgcggcgcgccgacgtcgcggcggag
gtgcgcgagaaggccgtgcgcctcgcgtcgaaccagctctgggcgcggccgagcctccgg
gacgcggtcgtcgcgcacgcgacggcgtccgtcgccggtgctgcgaaaccgacgggccgg
aaagccgagggcgacgacgagcgcgccgcagcgcttgagggcgtgcggcgcgagctcgcg
ctgggggtggcgctctgcgtcaaggacgtgagcctcgtgcccgtgctactccgcaacgcc
gccgcgacggcgggccgcgcggacgacagcgtgctcgtgcaggaggccgtcgcgctcgag
ctgccgcgcctcgcgccggcgctcgcgacgctccacgggcccgagccgacgctcgcgacg
gcggcgcaggcgctgaagagcgaggcgggcgacgccgtcgacgcggaccggtccaaggcg
acggaggcgctgctcctgtcgctcctcgaggcgctggcggggccggggacgaagcggacg
ccgggcctgtgggacggcgcggcgaagctccgcgaggccgtgcaggcgagccgcgccgcg
gcgtccgcttcggacgacacggtccgcttcctcgtgccggcgctgggctccgcgtccgcg
gcccagttcttcgacgcgctgccggcgctcctgctgcacctggacgacgcggcgctcgcg
gccgcgttccgccgcgccgtcgcggcgacgctgagcgcgacgaacaaggtgtccggcgcg
gcggcgacgctcggcgccgcggagctcgtcgtcggcctccacggcgtcgacgacaaggtc
gtgcccgtgaagcgcgtcacggaggcgctcaacgtctgcctggccgcgcgcgacgtcttc
ggcgcgctctgcctccgcgacgcgctcgacaagatgacggacgtcggcgccgacggcgac
gacaaggcgaggctcgcgaagctgccccagctcctcatgcgcacgtgcatcctcgccgtg
aagacgtacccggcgcagctcagctccttcgtcgcgtcgacggtgctcgtgcggctcgtg
aagatgaaggtctggacgcacggcgcgctctggaagggcttcatgatgtgctgcgggctg
ctcgcgtcgccgacggaggaccacagccacacgtgcttcgccgcggccctcgcgctcccg
gcgccccagctgtcgcacctcctcaagctcgcgcccaagctcaagctcccgctcaagcgc
cacgcggagaagctcatcaaggcccgcgacctcggcggcgtcaacccgccgtcgctcaag
ctcctggggctcgaggcgccggcggcgaactaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (1111)   
   KEGG ORTHOLOGY (1)   
   RefGene (1106)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (1121)   

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