KEGG   Arenibacter algicola: AREALGSMS7_02220
Entry
AREALGSMS7_02220  CDS       T04973                                 
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
  KO
K03092  RNA polymerase sigma-54 factor
Organism
aalg  Arenibacter algicola
Pathway
aalg02020  Two-component system
aalg02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:aalg00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    AREALGSMS7_02220 (rpoN)
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    AREALGSMS7_02220 (rpoN)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:aalg03021]
    AREALGSMS7_02220 (rpoN)
Transcription machinery [BR:aalg03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     AREALGSMS7_02220 (rpoN)
SSDB
Motif
Pfam: Sigma54_CBD Sigma54_DBD Sigma54_AID DUF3015 LacI COMM_HN RecX SurA_N_3 HTH_IclR
Other DBs
NCBI-ProteinID: ASO05674
UniProt: A0A221UWE5
Position
complement(2600919..2602376)
AA seq 485 aa
MLKQHLQFKLSQKLSPQQIQLMKLIQLPTQAFEQRLKQELEENPALETGKDEVDTQQDEF
DDLYDNETDSESISAEDINIDDYLSDDEIPDYRTQANNYSSDDEEKNVPYAAGISFNQYL
INQLNTVYLTDEEWSIAEFLVGSVDESGYIRRPLTDIMDDLAFTQNIYTDEKTIEKVLHI
VQDLDPAGVAARTLEECLLLQLKRKEVTPGIELAIQLLEKSFEQFTKKHYQKLIQKHNIT
EEQLKAAIAEIERLNPKPGGSYSGNNRIVEHVVPDFSIRIVDGELELTLNGRNAPELHVS
REYNNMLEGYKNSKEKSKSQKDTVMFIKQKLDAAKWFIDAIRQRQQTLYITMNEIMEYQK
EYFLTGDERKLRPMILKDIADGIGMDVSTVSRVANSKYVDTPYGTKLIKDYFSESMKNDQ
GEDVSTKEIKKILETVIGEETKKKPLTDDKLAAILKEKGYPIARRTVAKYREQLDIPVAR
LRKQI
NT seq 1458 nt   +upstreamnt  +downstreamnt
atgctgaaacaacacctacagtttaaattatcgcagaaattatctccacaacaaatacag
ttgatgaagttgattcaattgcctacgcaggcatttgaacaacgactaaaacaagaactg
gaggaaaaccctgcccttgaaactggaaaggatgaagttgacacgcaacaggatgaattt
gatgatctttatgacaatgaaaccgatagcgaaagcataagtgcggaagatatcaatatt
gacgattatttaagcgatgacgagattccggattatcgcacacaagccaataattacagt
tctgatgatgaggaaaaaaatgtcccttatgcggccggaatttcctttaatcaatatctc
attaatcagttaaacactgtttatttaacagatgaggaatggtccattgccgaatttttg
gtgggcagcgtcgatgaaagcgggtacataagaagacctcttacagatattatggacgat
ctggcctttacccaaaatatctataccgacgaaaagaccattgaaaaagtattgcacata
gttcaggatcttgaccctgcaggtgtagctgccaggactcttgaagagtgccttctgctt
caattaaaaaggaaggaagtgacccccggtatagaactggccattcaattgttggagaaa
tcctttgagcagttcaccaaaaagcactatcaaaagcttattcaaaagcacaacatcaca
gaggaacagttaaaggccgccattgccgaaatagaacgcttaaatcccaaaccaggaggt
tcctattccgggaataacagaattgtggagcacgtagttcccgatttctccattcgtatt
gtagacggggaactggagcttaccctgaacggaagaaatgcacctgagctgcatgtttca
cgggagtacaacaacatgttggaagggtacaaaaactccaaggaaaagtcgaagtcccaa
aaggacaccgtaatgttcattaagcaaaagttggatgcggccaaatggtttattgatgcc
ataaggcaacgtcagcagaccctttatattaccatgaacgaaatcatggaatatcaaaaa
gaatatttcctgaccggggatgaacgcaaactgcgacccatgatcctgaaagacatagcc
gatggtattggcatggatgtttctacagtctccagggtggccaacagcaaatatgttgac
accccatatggtacaaaattgataaaggactacttttccgaatccatgaaaaacgatcag
ggagaggatgtatctaccaaggaaattaaaaagatactggaaactgttattggagaagaa
accaagaaaaaaccgcttacagacgataaattggccgctattctcaaagaaaagggctac
cctattgcccggcgtacggtagcaaagtatagggaacaactggatattccggtggccagg
ttgagaaaacaaatttaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (22)   
   KEGG ORTHOLOGY (1)   
   RefGene (19)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (37)   

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