KEGG   Alternaria alternata: CC77DRAFT_568745
Entry
CC77DRAFT_568745  CDS       T05291                                 
Name
(RefSeq) TFIIH basal transcription factor complex helicase XPB subunit
  KO
K10843  DNA excision repair protein ERCC-3 [EC:5.6.2.4]
Organism
aalt  Alternaria alternata
Pathway
aalt03022  Basal transcription factors
aalt03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:aalt00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    CC77DRAFT_568745
  09124 Replication and repair
   03420 Nucleotide excision repair
    CC77DRAFT_568745
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:aalt03021]
    CC77DRAFT_568745
   03400 DNA repair and recombination proteins [BR:aalt03400]
    CC77DRAFT_568745
Enzymes [BR:aalt01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     CC77DRAFT_568745
Transcription machinery [BR:aalt03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     CC77DRAFT_568745
DNA repair and recombination proteins [BR:aalt03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     CC77DRAFT_568745
SSDB
Motif
Pfam: ERCC3_RAD25_C Helicase_C_3 ResIII Helicase_C SNF2-rel_dom DEAD
Other DBs
NCBI-GeneID: 29117846
NCBI-ProteinID: XP_018379705
JGI: 568745
UniProt: A0A177D3R8
Position
Unknown
AA seq 804 aa
MPPKRKLAQTAADAEAEDGWDDNDEGPMSDQETFDQLKEEFDVKAMTKRARAGRVRDAAA
DLFRKSDQWSAPLKPDHYNRPLWVNDAGGIILESFHPLFDEAQDFLINIAEPQSRVSKMH
EYQLTTHSLFAAVSVGHSKQEIIEKLDRYSKTALSAAIVQFVEKSTSAFGKAKIVLKKTL
SYIESEDPAILQKLLRDPVVAECRADSTDGLIKEAAPKIGQMAIPGTKLAAGANNMAQQQ
QPEAAQNPPPSDMIATLREDDDDDEVAQVHSFQIRSEEREKVVKRCRSIGLPLTEEYDFN
NDDTNPNLEIDLKPHAQIRYYQEKALSKMFSNSRARSGIIVLPCGAGKTLVGITAACGVK
KSVIVLCTSAMSVVQWRAEFIKWSNINPEDVAVFTADNKTRFPRQAGIIISTYSMISNAR
KRSHDAEKVMQFIREREWGLLIADEVHVVPANIFKKVTYEIASHAKLGLTATLLREDDKI
DDLNFLIGPKLYEANWQELSEQGHIAKVQCAEVWCQMTPEFYTEWLKPSSLQKRALLSIM
NPKKFQACQFLINYHESRGDKIIVFSDNVYALEKYSRKLGKAYIYGATPQQERLRILENF
QHNELVNTIFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRAKRRNDEGFNA
FFYSLVSKDTDEMYYSSKRQAFLVDQGYAFKVITRLEGLENFSQLAFATPQERRELLMDV
LLAREEDAKEERIEGDAFGTKYASNKGNKKKNGVRRAAGTLSELSGGQTMAYMEVNKSRN
KELKGTKGVQNAFMRKLARSGAKK
NT seq 2415 nt   +upstreamnt  +downstreamnt
atgccacccaaacgcaagctcgcgcagactgcagcagacgccgaggccgaagatggctgg
gacgacaacgatgaggggcccatgagcgaccaggagacgttcgatcaactcaaggaagag
ttcgacgtcaaggccatgacaaagcgggcgcgcgctggacgggttagagatgcggcggcc
gatctcttcagaaagtcagaccagtggagcgcgccgctcaagcctgaccactacaaccgc
ccgctctgggtcaacgatgcgggtggcatcatcctcgagtcttttcatcctctcttcgat
gaagctcaggactttttgatcaacatcgccgagccgcagtcgcgtgtctccaagatgcat
gagtatcaacttaccacccacagcctcttcgccgccgtcagtgttggccattccaagcaa
gaaatcatcgagaagctcgaccgctattccaagacagccctgtctgccgctattgtacag
ttcgtcgagaagtctacctccgccttcggcaaggcaaagatcgtgctcaagaagacgtta
tcgtacatcgagagtgaggatcctgccatacttcaaaaacttctccgcgaccctgtagtc
gccgaatgccgagcagactcaacggatgggctcattaaggaggccgcacctaagatcgga
cagatggctatcccaggtacaaagttggctgctggtgccaacaacatggcacagcagcaa
cagccagaagctgcccagaatccgccaccaagcgatatgattgccacgctccgagaggac
gatgacgatgacgaagttgcccaagttcactcgttccagatcagaagcgaggagcgcgaa
aaggtcgtcaaacgctgccgaagcattggcctgccgctcaccgaagaatatgatttcaac
aacgacgataccaacccgaaccttgaaatcgatctcaagccccatgcacagatcagatac
taccaggaaaaggctttgagtaaaatgttctcaaactctcgagcgcgttcaggtatcatt
gtgttgccttgtggtgcaggtaagactttggtcggcatcacagccgcctgtggtgtcaag
aaatcagtcattgtcctgtgcacgagcgccatgtcagtcgtgcaatggcgagctgaattt
atcaaatggtccaacataaatccagaggatgttgccgttttcactgcagataacaagact
agattcccgcgccaggccggtatcatcatcagcacctactctatgatcagtaacgctagg
aaacgttcgcacgatgccgagaaggttatgcagtttatccgtgagagagaatggggactg
ctgattgctgacgaggtgcacgttgtacccgccaacatcttcaagaaggtcacatatgag
attgcgtcccacgcaaagttggggcttacagctacactactgcgagaagatgacaagatc
gatgacctcaacttcctgattggacccaagctgtacgaagctaactggcaagagctatca
gaacaaggccatattgccaaggtccagtgcgctgaagtctggtgccagatgacacccgaa
ttttacacagagtggctcaagccttcgtccctacaaaagcgtgcactactctccatcatg
aatcccaagaagttccaagcctgtcagttcctgattaactaccacgagtcacgaggagac
aagattatcgtcttttctgacaacgtctacgcgttggagaaatactcacgtaaacttggc
aaggcatacatttacggcgcaacacctcaacaagaacgtctccgtattttggagaacttt
caacacaatgagcttgtcaacactatcttcttgtccaagattggtgacactagtctggat
ttacccgaggcgacgtgccttatacaaatctcttctcactacggttctcgtcgtcaagaa
gcacaacgcctgggcagaatcctgagggcgaagcgtaggaacgacgaaggcttcaatgcc
ttcttctactcgctagtctccaaggatacagacgagatgtactattcgtcaaagcgccag
gctttcctagtcgatcaaggatatgccttcaaggtcatcactcgtctcgaaggcttagag
aatttctcacaactggcgttcgcaacaccacaggagcgtcgagagcttcttatggacgtc
ctactcgctcgtgaagaagacgccaaggaagagaggatcgagggtgacgcgttcggtacc
aaatatgcgtccaacaagggcaacaagaagaagaacggtgtgagaagggcagccggtaca
ctttccgagttgtctggaggtcagaccatggcgtacatggaagtcaacaagagcagaaac
aaggaactcaagggcaccaagggtgttcaaaacgctttcatgcgaaaattggccaggtct
ggggccaagaagtga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (22)   

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