KEGG   Alcaligenes aquatilis: D3M96_19590
Entry
D3M96_19590       CDS       T05678                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
aaqu  Alcaligenes aquatilis
Pathway
aaqu03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:aaqu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    D3M96_19590 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:aaqu03021]
    D3M96_19590 (rpoC)
   03400 DNA repair and recombination proteins [BR:aaqu03400]
    D3M96_19590 (rpoC)
Enzymes [BR:aaqu01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     D3M96_19590 (rpoC)
Transcription machinery [BR:aaqu03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     D3M96_19590 (rpoC)
DNA repair and recombination proteins [BR:aaqu03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      D3M96_19590 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Biotin_lipoyl_2 PaaX
Other DBs
NCBI-ProteinID: AYN22566
UniProt: A0A3G2HZH8
Position
complement(4271570..4275835)
AA seq 1421 aa
MKALLDLFKQVTQDEQFDAIKIGIASPEKIRSWSFGEVRKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTVSKVRRERMGHIELACPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAWCVIEPGMTPLKRGQIMSDDDFLAKTEEYGDDFHALM
GAEAVRELLRTIDIDREVERLRAELKATGSDAKIKKISKRLKVLEGFQKSGIKADWMIME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPDIILRNEKRMLQ
ESVDSLLDNGRRGKAMTGANKRQLKSLADMIKGKSGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKLMALELFKPFIFNRLELMGLATTIKAAKKLVESQEPVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLEA
RTLMLASNNVLFPANGEPSIVPSQDIVLGLYYATRELVNGKGEGLFMADVAEVQRAYDNK
EVELQTRLTVRIEEFEKGEDGEWVKTIKRYETTAGRALLSEILPKGMPFTALNRALKKKE
ISRLINQSFRRCGLRATVIFADKLMQSGFRLATRGGISIAMNDMVVPAVKESILAQASKE
VKEIDKQYSSGLVTAQERYNNVVDIWGKAGDRVGKAMMEQLASEPVTNRFGEEVRQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVTQDLVITEDDCGTKGGYTMKAILDGGEVIEPLRDLIL
GRVASTDIVNPDNQELVIPAGTLLNEDLVELIDNLGIDEVKIRTPLTCETRHGLCVSCYG
RDLGRGTLVNRGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAALASSVETKTAGTVGF
EIGLRYVTNAKGERVAISRSGEIVIFDDNRRERERHKVPYGATITVGDGDAIKAGQRLAS
WDPLTRPIVSEYTGTVRFENIEEGVTVARQVDEVTGLSTLVVITPKTRGGKITMRPQIKL
LNEQGQEIKIAGTDHMVNISFPVGALITVRDGQQVSVGEILARIPQESQKTRDITGGLPR
VAELFEARSPKDAGLLAEVTGTVSFGKDTKGKQRLVITDLDGVSHEFLIPKEKQVLAHDG
QVVNKGEMIVDGPADPHDILRLKGIEKLANYIVNEVQDVYRLQGVKINDKHIEVIVRQML
RRVNIVDAGDTSFITGEQVERSELLNENDRVLAENGIPATYENVLLGITKASLSTDSFIS
AASFQETTRVLTEAAIMGKTDDLRGLKENVIVGRLIPAGTGMAFHAARKEKEAFEVAERK
AARELENPFASAPEPSEDPVFVSGASESEQAQPEAPEGDQE
NT seq 4266 nt   +upstreamnt  +downstreamnt
atgaaagcgctactcgatctctttaaacaagtcactcaggacgagcagttcgatgccatc
aagatcggcatcgcctcgcccgagaaaatccggtcctggtctttcggtgaagtccgcaag
ccagagaccatcaactatcgcacgttcaaacccgaacgcgatggtctgttttgcgccaag
atttttggtcccatcaaggactacgaatgcttgtgtggcaaatacaagcgcctgaaacat
cgtggcgtcatctgcgagaagtgtggtgttgaagtcaccgtctccaaggtgcgtcgcgag
cgcatgggtcacattgaactggcctgcccggttgctcacatctggttcctgaagagcctg
ccatcccgtctgggcatggtgctggacatgaccctgcgtgacatcgagcgcgtactgtac
tttgaagcctggtgcgtgatcgaacctggtatgaccccgctcaagcgcggtcagatcatg
tccgatgacgatttcctggccaagaccgaagaatacggtgatgacttccacgccctgatg
ggcgcggaagcggtgcgcgaattgttgcgtacgatcgacatcgatcgcgaagtcgagcgc
ctgcgcgccgaactgaaagccactggctcggatgccaagatcaagaagatctccaagcgt
ctgaaagtactggaaggcttccagaaatccggcatcaaggcagactggatgatcatggaa
gtgctgcccgtgctgccaccggacttgcgtccgctggtgccactggacggtggtcgcttt
gcgacttccgacctgaacgatctgtaccgccgcgtgatcaaccgtaataaccgtttgaag
cgtctgctggaactgaaggctccggacatcatcttgcgcaacgaaaaacgtatgctgcaa
gagtccgtggactccttgctggataacggtcgtcgcggtaaagccatgaccggcgccaac
aagcgtcaactgaagtccttggccgacatgatcaagggcaagagcggtcgtttccgtcag
aacctgctgggcaagcgcgtggactactctggtcgttccgtgattgtggtgggtcctcag
ttgaagctgcaccagtgtggtctgcccaagctgatggcgctggaactgttcaagcccttc
atcttcaaccgtctggaattgatgggtctggctacgaccatcaaggcggccaagaagttg
gtggaaagccaggaaccggtggtgtgggacatcctcgaagaggtgatccgcgagcatccg
gtcatgctgaaccgtgcaccgacgctgcaccgtttgggtattcaggcttttgaaccggtc
ctgatcgaaggtaaagcgattcagctgcaccccttggtgtgtgccgcctttaacgctgac
tttgacggtgaccagatggccgttcacgtgccgctgtcgctggaagcccagctggaagcg
cgcaccctgatgctggcctcgaacaacgtgctgttccccgccaacggcgaaccatccatc
gttccttcccaggatatcgtgttgggtctgtactatgcgacccgcgaactggtaaatggc
aagggcgaaggtctgttcatggccgatgtggccgaagtccagcgcgcctacgacaacaag
gaagtcgagctgcaaactcgtctgaccgtccgtatcgaagaattcgagaagggcgaagac
ggtgagtgggtcaagaccatcaagcgttacgaaacgacggctggccgtgccttgttgtcc
gaaattctgcccaagggcatgcctttcaccgcactgaaccgtgcgttgaaaaagaaagaa
atttcgcgtctgatcaaccagtccttccgtcgctgtggcctgcgtgccaccgtgattttt
gcggacaaattgatgcagtccggtttccgtctggcaacacgtggtggtatttccatcgcc
atgaacgacatggttgtgcctgccgtcaaggaaagcatcctggcccaggcaagcaaggaa
gttaaagaaatcgacaagcagtactcctccggtctggtgacggctcaggaacgctacaac
aacgtggtggacatctggggcaaagccggtgaccgcgtgggtaaggccatgatggagcaa
ctggcttccgagccagtgaccaaccgttttggtgaagaagtacgccaagagtccttcaac
tccatctacatgatggcggactccggtgctcgtggttcggctgcacagattcgtcagctg
gctggtatgcgtggtctgatggccaagccagatggctccattattgaaacgcctattacc
gcgaacttccgtgaaggtctgaacgtactgcagtactttatttcgactcacggggctcgt
aagggtctggctgatacggccttgaagacggctaactccggttacctgactcgtcgtctg
gtcgacgtgactcaagatctggtcattaccgaagacgattgcggtaccaagggcggctac
accatgaaagccatcctggatggtggtgaggttatcgagcccctgcgcgatctgattctg
ggtcgtgtggcctcgaccgacatcgtcaaccctgacaaccaggaactggttatccccgcc
ggcaccttgctgaacgaggatctggtcgagttgatcgacaacctgggcattgatgaagtc
aagatccgtactccgctgacttgcgaaacccgtcatggcttgtgcgtaagctgctacggt
cgtgatctgggccgcggtacgctggtcaatcgtggtgaagctatcggtgttatcgcggct
cagtccatcggtgaaccgggtacccagttgaccatgcgtacgttccacattggtggtgcc
gcttcgcgtgccgcgctggcaagttcggttgaaaccaagacggcaggtacggtcggtttt
gaaatcggtctgcgttatgtgaccaacgccaagggcgaacgtgttgcgatctcccgttcc
ggcgaaattgtcatttttgacgacaatcgtcgcgagcgcgaacgtcacaaagtgccttac
ggtgccaccattacggtcggtgatggtgatgcgatcaaggctggccagcgtctggcaagc
tgggatccgctgacccgtcctatcgtgtccgagtacaccggtacggttcgcttcgagaat
atcgaagagggcgtaaccgtggctcgtcaggtggacgaagtgaccggcctgtcgactctg
gttgtgatcactcccaagacacgtggtggcaagatcaccatgcgtcctcagatcaagctg
ctgaacgaacagggtcaggagatcaagatcgcgggtaccgatcacatggtcaatatctcc
ttcccagtgggcgccctgattaccgttcgtgacggtcagcaagtgtccgtgggtgagatt
ctggcgcgtattcctcaggaatcgcaaaagactcgggatattactggtggtctgccacgt
gtggccgaactgttcgaagctcgttcgcccaaggatgccggtctgctggccgaagtcacg
ggtacagtttccttcggtaaagacaccaagggcaaacagcgtctggtcattactgacctg
gacggtgtcagtcacgaattcctgattccgaaggaaaaacaggttctggctcacgacggt
caagtggtgaacaagggcgagatgattgtggacggcccggccgatccgcacgacatcctg
cgcttgaagggtatcgagaaactggccaactacattgttaatgaagtgcaggacgtttac
cgtctgcaaggtgtgaagatcaacgacaagcacattgaagtgattgttcgtcagatgctg
cgccgcgtgaacattgtggatgccggtgataccagcttcatcacgggtgaacaggttgaa
cgctccgaactgctgaacgagaacgatcgcgtcctggctgaaaacggtattcctgctacg
tacgaaaacgtgctgctgggtattaccaaggcctcgctgtcgaccgactccttcatctcg
gcggcttccttccaggaaaccacccgcgtgttgaccgaagcggccatcatgggcaaaacc
gacgatctgcgtggtctgaaagaaaacgtgatcgtgggccgtctgattcctgctggtacc
ggtatggctttccatgctgcccgcaaggaaaaagaagcctttgaagtggcagagcgcaaa
gcagcccgtgaactggaaaatccgttcgcatcggctcctgagccttcggaagaccccgtc
tttgtgtcgggtgcctctgagtctgagcaggcgcaacctgaagccccagagggcgatcag
gaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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