KEGG T04403: AVL56

Alteromonas stellipolaris R10SW13: AVL56_07135

Entry

AVL56_07135       CDS       T04403

Name

(GenBank) exodeoxyribonuclease I

K01141

exodeoxyribonuclease I [EC:3.1.11.1]

Organism

aaw Alteromonas stellipolaris R10SW13

Pathway

aaw03430

Mismatch repair

Brite

KEGG Orthology (KO) [BR:aaw00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    AVL56_07135
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:aaw03400]
    AVL56_07135
Enzymes [BR:aaw01000]
3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.1  exodeoxyribonuclease I
     AVL56_07135
DNA repair and recombination proteins [BR:aaw03400]
Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA exonucleases
     AVL56_07135
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     AVL56_07135
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      AVL56_07135

SSDB

Motif

Pfam:

Exonuc_X-T_C RNase_T

Other DBs

NCBI-ProteinID:

AMJ94104

Position

1660312..1661745

AA seq 477 aa
MHEPSFLWYDFETFGTSGQKDLPCQFAAIRTDLDFNIIGKPINIMSAIANDYLPHPEACL
VTGITPQQTLRDGSNEADFAKRIYEEMSTPNTCSLGFNSIRFDDEVARFLFYRNFYDPYS
REWRNGNSRWDIIDLARACYALRPDGINWPAREDGTPSFKLEHLTKENGISHENAHDALS
DVHATIALAKLIKEKQPRLFEYAYSLRSKHNVANQFDLTKPSVLLHISAKLPASQGCCTW
IMPVAKHPTNSNAIIAVDLSKPIDSLLNDSPEEIKAKLYARYEPGSDANSLRPGLKLIHI
NRSPFVTTAKAMTEDNAHRLGLDRDACLENYRILAQERDLGMKLSKVYENDADDKEQDID
HALYSGGFLSTEDRHWCDKVLESSPEQLGALSEDTQHVGLRALLFRYRARNYPSTLTYDE
TLKWQRHRQERLTDSTSPASITLEHYMSTLERLAHEHVDNPEKQAILRALFQYAENL

NT seq 1434 nt +upstreamnt +downstreamnt
atgcacgaacctagctttctttggtacgatttcgaaacgttcggtaccagtggtcaaaaa
gatttaccttgtcagttcgccgctattagaaccgatctggattttaatattattggtaag
cccattaatatcatgagcgccatcgctaacgattacttgccccaccctgaagcctgtttg
gttaccggcattacgcctcaacaaaccttacgtgacggctcgaacgaagctgattttgcc
aaacgtatttatgaagaaatgtcgacccccaacacctgtagtttgggatttaatagcata
cgcttcgatgatgaagtcgctcgtttcttgttttaccgaaacttctatgacccttattcc
agagaatggcgaaatggaaatagccgatgggatattatagatttagcgcgagcatgctat
gcacttcgccctgatggcataaactggccagctcgtgaagatggtacgcctagcttcaag
ctagaacacttaaccaaagaaaacggcataagtcatgagaacgctcacgatgcattaagt
gacgttcacgccactatcgccttagcaaagctcattaaagaaaagcagcctagattattc
gaatacgcttattcgcttcgtagtaagcataatgtggctaaccagtttgatttaactaag
ccttccgttttgttgcatatttcagctaagttgcctgctagccaagggtgttgtacgtgg
ataatgcctgttgctaaacaccctaccaacagtaacgcaattattgccgtagacttgtca
aagcctatcgatagcttacttaacgattctcctgaagagataaaagccaaactttacgcg
cgctatgagcctggcagtgatgccaatagtttgcgccctgggttgaagctcattcatatt
aaccgctctccttttgtgactactgcaaaagcaatgacagaagataacgcgcatagatta
gggttagacagagatgcctgccttgaaaattaccgtattttggcgcaagagcgtgactta
ggcatgaagttgtcaaaagtgtatgaaaacgacgcagatgataaagagcaagatatcgat
catgccctttatagcggaggttttttaagtactgaagatcgccattggtgcgataaagta
ctggaatcaagcccagaacaacttggcgccttatctgaagacactcagcatgtaggcctt
agggctttattgtttagatatagagcgcgtaattacccgtcaacacttacctatgatgaa
acgctgaagtggcaacgacatcgacaagagcgtttaaccgactccacttcaccagcatcg
attacgcttgagcattatatgagcacgttagaacgccttgctcatgaacatgttgataat
cccgaaaaacaagcgatattaagagcattatttcaatatgccgaaaacctttga

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (2)   
   Pfam (2)   
All databases (11)   

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