KEGG   Suicoccus acidiformans: CL176_11875
Entry
CL176_11875       CDS       T05652                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
abae  Suicoccus acidiformans
Pathway
abae03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:abae00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CL176_11875 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:abae03021]
    CL176_11875 (rpoC)
   03400 DNA repair and recombination proteins [BR:abae03400]
    CL176_11875 (rpoC)
Enzymes [BR:abae01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     CL176_11875 (rpoC)
Transcription machinery [BR:abae03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     CL176_11875 (rpoC)
DNA repair and recombination proteins [BR:abae03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      CL176_11875 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Apocytochr_F_C Biotin_lipoyl_2
Other DBs
NCBI-ProteinID: AXY26638
UniProt: A0A347WNI1
Position
complement(2530468..2534139)
AA seq 1223 aa
MIDVNTFDSMKISLASPEKIRSWSYGEVKKPETINYRTLKPEKDGLFDERIFGPTKDWEC
ACGKYKRIRYKGRVCERCGVEVTRSNVRRERMGHIELAAPVTHVWYFKGIPSRMGLVLDL
SPRLLEEVIYFASYIVTDPGDTMLEYKSLLSETEYRERKREYGNRFTAKMGAEAIRDLLR
DVDVEAEVKMLKEELRTATGQKRTRAVRRLEILDSFLKSGNQLTSMIMEALPVIPPELRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPNIIVQNEKRMLQEAVDSLIDNGR
RGRAVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPKE
MAIELFKPFVMKELVEREIAGNVKMAKKMIERLDDAVWSVVEDVIKEHPVLLNRAPTLHR
LGIQAFEPVLVEGKAIRLHPLVCEAYNADFDGDQMAVHVPLSEEAQAEARMLMLAAQHIL
NPKDGKPVVTPSQDMVLGNYYLTLEEAGQKGEGMLISSANEAVLAYENGYAHLHTRVAVP
AKSLADEGKPFTSWQEERLMVTTIGKLIFNEIMPKEFPYLNEPTMDNLTNRTPDKYFLEP
GTDVKEAIEAMELVDPFKKKNLGNIIAEVFKRYKVTETSNMLDRMKDLGYHYSTQAGITV
GVADVIRLESKHQILEEAHEHVEKITKQYRRGLITEDERYNSVIRTWEKAKDDIQDDLVE
ELPRLNSINMMSDSGARGNISNFTQLAGMRGNMAAPSGKIIELPITSNFREGLSVLEMFI
STHGARKGMTDTALKTADSGYLTRRLVDVAQDVIVREDDCGTDKGVEIEAIRDGNSITES
LAERMIGRYTMKTIYHPETGEVIIGANQLITEDIANQVTAAGIESVSIRSVFTCNTNHGV
CKHCYGQNLATGEEVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVAGGGDITQGLPRIQ
EIFEARNPKGQATITEVAGVIESIEEKASDRTKDITVRGITDTRTYNIPFQARLKVTEGD
QVERGQALTEGSIDPKELLRVTDVLTVEKYLLNEVQGVYRGQGVEIGDKHVEVMIRQMLR
KVRVMDPAGTDILPGAMMDISDFTRANEETIRAGETPATARPVLLGITKAALETNSFISA
ASFQETTRVLTDAAIRGDQDHLIGLKENVVIGKLIPAGTGMQRYRDIQTNTAHERELQAI
ALQEAQEQADESEVDEATVLNEN
NT seq 3672 nt   +upstreamnt  +downstreamnt
ttgatagatgtaaatacatttgattcaatgaagattagcttggcatcccctgagaaaatc
cgtagttggtcttacggcgaagttaagaaacctgagacgattaactaccgaacgctcaag
cctgaaaaagatggtttgtttgatgagcgtatctttggccccacgaaagattgggagtgt
gcttgtggtaaatacaagcgcattcgctataaagggcgtgtctgcgaacgttgtggtgta
gaagtaacgcgttcgaacgttcgccgcgaacgaatgggacacattgagttggcagctcct
gtcactcatgtgtggtatttcaaaggaattccaagccgcatgggcttagtgcttgattta
agtccacgtttactagaagaagtcatttatttcgcatcttatattgtcacagatccaggt
gacactatgttggaatataagagtcttctatcagaaacagagtaccgggagcgtaaacgt
gaatacggcaatcgtttcacagcgaagatgggtgctgaagctatccgtgatttattacgg
gatgtagatgttgaagcagaagtgaagatgcttaaggaagaattacgtacagcaacaggt
cagaaacggactcgtgccgtacgtcgtcttgaaatcttagactctttcttaaagtcaggg
aatcagttaacgtctatgattatggaagctttacctgttattccaccagaacttcgcccg
atggtccaactagaaggtggacgtttcgcaacaagtgacttaaatgatctataccgtcgc
gtaatcaatcgaaataatcgtttgaagcgcttattagacttaggagcgccaaacattatc
gtccagaatgagaaacgtatgcttcaagaagcagttgactcattgattgataacggccga
cgtggtcgtgccgttactgggccaggtaatcgcccactgaaatctctttcccatatgttg
aaagggaagcaaggacgcttccgtcaaaacttactagggaaacgtgtcgactactcaggt
cgttcagtaattgttgttggtccaaatttaaagatgtaccaatgtggtttgcctaaggaa
atggctattgagctcttcaaaccttttgtaatgaaagaattagtagagcgtgaaatagcc
ggaaacgtcaaaatggcgaagaaaatgattgaacgcttagacgatgcagtctggtcagtg
gttgaagatgtgattaaagaacatccggtattacttaaccgcgcacctaccttacaccgt
ttgggcattcaagcgtttgaaccggtactagttgaaggtaaagccattcgcttgcatccg
cttgtttgtgaggcgtataacgctgactttgatggggaccaaatggctgtccacgtacct
ttatctgaagaagcccaagccgaagcacgtatgctgatgcttgcagcccagcatattctg
aacccgaaagacgggaagccagttgttacaccgtctcaggatatggttttaggtaactat
tacttaacgcttgaagaagctggccaaaaaggcgaaggaatgcttattagtagtgctaat
gaagcggtcttggcttatgagaatggttatgcccacttacatacgcgggtagctgttcca
gcgaagtcacttgctgatgaagggaaaccatttacttcatggcaggaagaacgcttaatg
gttacgacaatcggtaagttgattttcaatgaaatcatgccgaaggaattcccgtactta
aatgaaccaacgatggataacttgaccaatcggactccagataagtatttcttagaacca
ggaacagacgttaaagaagcgattgaagcgatggaactggtggatcctttcaagaagaag
aacttaggaaacatcattgctgaagttttcaaacgttataaagtaacagaaacgtctaat
atgttggaccgcatgaaagatttaggttaccattactcaacccaagcaggtattacggtt
ggggtggcagatgttattcgtctagagagtaaacatcaaatccttgaagaagcacacgaa
catgttgagaaaattacgaaacaataccgtcgcggtttgattaccgaagatgaacgttat
aacagtgttattcggacatgggagaaagccaaagatgatattcaagacgatctagttgaa
gagcttcctcgtttgaactctatcaatatgatgtcggattctggagctcggggtaacatc
tctaactttacccaacttgctggaatgcgcggtaacatggccgctcctagtggtaagatt
atcgagttaccgatcacctctaacttccgggaaggtttgtctgtcttagagatgtttatc
tctacgcacggtgcccgtaaagggatgactgatacggcccttaagacggctgactcaggt
taccttacacgccgtctggtagacgtggcccaagacgttattgtacgtgaagatgattgt
ggtaccgataaaggggtcgaaatcgaagcaattcgtgacggcaacagtattacagaatcc
cttgcagagcgtatgattggtcgttatacgatgaagacaatctaccatccagaaactggc
gaagtgattattggtgctaaccaattgattacagaagacatcgctaatcaagtaacagca
gcagggattgaatcagtttcgattcgttctgtctttacatgtaatacaaaccacggtgta
tgtaagcattgttatggccaaaacctcgcgaccggcgaagaagtggaagtcggtgaagca
gttggtacgattgctgcacaatcaatcggtgaaccgggtacccaacttactatgcgtacc
ttccacacgggtggtgttgccggtggtggcgatatcacacaaggtttaccgcgtatacag
gagattttcgaagcgcgtaatccgaaaggacaagctacaattacagaagtggccggcgtt
atcgaatcaatcgaggagaaggcttcagaccgtacgaaagatattaccgtacgaggcatt
acagatactagaacatataatattcctttccaagctcgcctgaaagtaaccgaaggcgat
caagtggaacgtggccaagcccttacagaaggttcaatcgatccaaaagaattacttcgt
gtaacggatgtactcacagttgagaagtatttattgaatgaagtacaaggggtttatcgc
ggccaaggggtggaaattggcgataagcacgttgaggtgatgattcgtcaaatgcttcgc
aaagttcgggtaatggacccagcaggtacggatattctaccaggagcaatgatggatatt
tctgactttacacgtgctaacgaagagaccattcgtgccggtgaaacaccagcaacagct
cgtccagtcttacttggaattaccaaagctgccttggaaactaattcatttatttcggct
gcatccttccaagagacaacacgtgtcttaacagatgccgctattcgtggagatcaagac
cacctaatcggcttgaaagagaacgttgtaataggtaagctaattccagcaggaactggt
atgcaacgttaccgcgatattcaaacgaatacagcgcatgagcgcgaattacaagcgatt
gctttgcaagaagcacaagaacaagcggatgaatcagaagtagacgaagcgactgttctt
aacgaaaactaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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