KEGG   Candidatus Nanopelagicus limnes: B1s21122_00955
Entry
B1s21122_00955    CDS       T05073                                 
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
  KO
K03040  DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
Organism
abam  Candidatus Nanopelagicus limnes
Pathway
abam03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:abam00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    B1s21122_00955
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:abam03021]
    B1s21122_00955
   03400 DNA repair and recombination proteins [BR:abam03400]
    B1s21122_00955
Enzymes [BR:abam01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     B1s21122_00955
Transcription machinery [BR:abam03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     B1s21122_00955
DNA repair and recombination proteins [BR:abam03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      B1s21122_00955
SSDB
Motif
Pfam: RNA_pol_A_bac RNA_pol_A_CTD RNA_pol_L HHH_5
Other DBs
NCBI-ProteinID: ASY08936
UniProt: A0A249JWP4
Position
complement(1082272..1083285)
AA seq 337 aa
MLIAQRPILTEEVVSEYRSRFIIEPLEPGFGYTLGNSIRRTLLSSIPGAAVTGIRVNNAL
HEFTALEGVKEDLTEIVLNIKNLVLSSDNDEPSLLYIRKNGEGIVTGADVAAPAGVQVHN
PELHIATLNSKAKFEIELTVERGRGYITAVQNKQAGGEIGRIPVDSIYSPVLRVTYKVEA
TRVEQRTDFDRLVVDVETKRSMKPADAMASAGKTLVELFGLARELNANAEGIEMGPSIQD
AALAADMALPIEDLDLTVRSYNCLKREGIHTVGELLSRSEADLMDIRNFGSKSIDEVKAK
LQSMGMQLKDSPAGFDPTKHANYGSNVDDELVDAEEV
NT seq 1014 nt   +upstreamnt  +downstreamnt
gtgctaattgcacaacgccccatcctcactgaggaagtagtaagcgaataccgttcacgg
ttcattattgagccactagaaccaggtttcggttacacccttggtaattcaattcgtcgc
accttgttatcttcaattccaggagcagctgttactggtattcgagtaaacaatgcgttg
cacgagttcactgccctagaaggtgtgaaagaagatctaactgagatcgtcttaaacatc
aaaaacctagttttatcttcagataatgatgagccatcacttctttacatccgtaaaaat
ggtgagggaattgttactggtgcagatgttgcagctccagctggtgtgcaggtgcacaac
ccagagctacacattgctaccctaaactcaaaggcaaagtttgagattgagttaacagtt
gagcgtggtcgtggttacattaccgctgttcaaaacaagcaagcaggaggagaaattggt
cgaattccagttgactctatttactcacctgtattgcgcgttacctacaaagttgaagca
actcgtgttgaacaacgtaccgacttcgatcgcttagttgtagatgttgagactaagaga
tcaatgaagccagctgatgcaatggcatctgccggaaagacattggttgagttgtttggt
ttagcacgtgaattaaatgctaacgctgaaggaattgagatgggaccgtccattcaagat
gcagcactcgctgctgacatggcacttccaatcgaagatcttgatctaactgttcgttct
tataactgcctaaagcgcgaaggtattcacaccgttggtgagttactttcacgttctgaa
gcagatctaatggatattcgtaacttcggctccaaatcaattgatgaggttaaggcgaaa
ctacaatccatgggaatgcaattaaaggacagcccagctggatttgatccaactaagcat
gctaattatggaagcaacgttgatgatgaacttgtcgacgctgaagaggtctag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (21)   
   KEGG ORTHOLOGY (1)   
   RefGene (18)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (33)   

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