KEGG   Trichophyton benhamiae: ARB_03624
Entry
ARB_03624         CDS       T01611                                 
Name
(RefSeq) hypothetical protein
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
abe  Trichophyton benhamiae
Pathway
abe03020  RNA polymerase
abe03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:abe00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    ARB_03624
  09124 Replication and repair
   03420 Nucleotide excision repair
    ARB_03624
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:abe03021]
    ARB_03624
   03400 DNA repair and recombination proteins [BR:abe03400]
    ARB_03624
Transcription machinery [BR:abe03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     ARB_03624
DNA repair and recombination proteins [BR:abe03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      ARB_03624
SSDB
Motif
Pfam: RNA_pol_Rpb4 Cut8
Other DBs
NCBI-GeneID: 9525386
NCBI-ProteinID: XP_003010118
UniProt: D4B584
AA seq 163 aa
MSSSTPVHEPTHRKRELPQSELEATAQLKLGEFQHVPTLSLSEARLVINKVLDLRRKGES
KFEEREPPMMLTPISLAGRTLVKTQDYLEVFARFKEKENIEAVERLLSAHTELEFFERSQ
LGSLCCDNAEEAKSLIPSIGNKISDADLQELLDELTKLRNFVE
NT seq 492 nt   +upstreamnt  +downstreamnt
atgagctcttccacgcccgttcacgagcccacgcaccgcaaacgcgagctcccccagagc
gaactcgaagctaccgcccagctcaagctcggcgaattccagcatgttccgaccctgtct
ctgtccgaagctcgactggtgatcaacaaggtccttgacctgcggaggaaaggagagagc
aagtttgaagagcgagagccgcccatgatgctaacgccgatttcgctcgccggcaggacc
ctggtcaaaacacaggactatctcgaagtgtttgccagattcaaagagaaagagaacatc
gaggctgtcgagcgacttctctctgcgcatacggagctggagttctttgagcggtcacaa
ctagggagtctatgctgtgataacgccgaagaagccaagtcccttatcccgagtattgga
aacaagatctcggatgcagacctgcaggagctcctagacgagctcaccaagctgcgaaat
ttcgtggagtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   RefGene (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (16)   

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