KEGG   Acinetobacter baumannii TYTH-1: M3Q_1004
Entry
M3Q_1004          CDS       T02261                                 
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
abh  Acinetobacter baumannii TYTH-1
Pathway
abh03030  DNA replication
abh03410  Base excision repair
abh03420  Nucleotide excision repair
abh03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:abh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    M3Q_1004
   03410 Base excision repair
    M3Q_1004
   03420 Nucleotide excision repair
    M3Q_1004
   03430 Mismatch repair
    M3Q_1004
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:abh03032]
    M3Q_1004
   03400 DNA repair and recombination proteins [BR:abh03400]
    M3Q_1004
Enzymes [BR:abh01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     M3Q_1004
DNA replication proteins [BR:abh03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     M3Q_1004
DNA repair and recombination proteins [BR:abh03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     M3Q_1004
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     M3Q_1004
   MMR (mismatch excision repair)
    DNA ligase
     M3Q_1004
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      M3Q_1004
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD PTCB-BRCT HHH 5_3_exonuc
Other DBs
NCBI-ProteinID: AFU37096
Position
1102990..1105026
AA seq 678 aa
MAITSVIEQMRQLIQLIAKHNHAYYVMDQPTISDSEYDHLFHQLKALEEQYPELVQADSP
TTKVGGQALSKFESVTHVVPMLSLGNVFNQEDLFAFARRVEERLPNQKVQYEVELKLDGL
AISLWYENGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLHSEKYEIPRLLEVRGEVLMP
KSGFEKLNADQEAKGEKTFANPRNAAAGSLRQLDPNIAAARPLAFYAYGIAQCEPNHGLT
TMHDSLQWLTELGFQIAERQYLCNSIQEVQQRYEQIQQERPNLQVEIDGMVVKVDDLKQQ
QQLGFLSREPRWATAYKFPAQAALTTVEQIDWQVGRTGTLTPVARLNPVFVGGVTVSNVT
LHNIGEIHRLDVRIGDTVSVYRTGDVIPKVEKVWPEFRPAEAEVVHLPESCPVCASPVVM
PEGEALARCSGGLYCAAQRIEAIRHFVSRKAMDIEGLGDRWVESLLRLDLLKDVADIYHL
HEHRETLLGIEKMGEKSVQNLIDAIEASKKTTLARFIYALGIRGVGETTARMLANTFQTL
EALKAANVEALKKTPDVGDITAEWIADFFLAPHNIEVLDRLIAAGIHWDAPTAPTRQPLN
GESWVLTGTLEQMTRDQATQMLQALGARVSGSVSSKTKCVVAGEKAGSKLEKAAKLGIPV
MNETDFLSLMAGYGQTLS
NT seq 2037 nt   +upstreamnt  +downstreamnt
atggcaataacttccgtgatcgaacagatgcgtcagcttattcaactgattgcaaagcat
aaccatgcctactatgtcatggatcagccgacaatctcggacagtgaatatgatcattta
tttcatcagttaaaagctttagaagaacaatatccggaacttgtacaagccgactcacca
acaacaaaagtaggtggtcaagcgctttcaaaatttgagagtgtgacgcatgtggtcccc
atgctttcacttggtaatgtatttaaccaagaagacttatttgcatttgcacgccgtgta
gaagagcgacttccgaaccagaaagtacaatatgaagttgagttaaaactcgacggcctt
gcgatttcactatggtatgaaaatggtgtacttgttcgcggtgtaacccgtggggatggc
gaaacgggggaagacattactcaaaacgttaaaactattcgtaacttacctaaagttctg
cattcagaaaaatatgaaatacctcgtctacttgaagtacgtggtgaagtattgatgcca
aagtctggttttgaaaaactcaatgctgaccaagaagcaaagggagaaaaaaccttcgct
aaccctcgaaatgcagccgcaggaagtttaagacaacttgatccaaatattgctgctgct
cgacctttggcattttatgcgtatgggattgcacagtgtgaaccgaatcatggcctgaca
accatgcatgatagcttacaatggttaacggaacttgggttccaaattgctgagcgtcag
tacttgtgtaattcaattcaagaagtacagcagcgctatgagcaaattcagcaagaacgt
ccaaacttgcaagttgaaattgatggcatggtggtgaaggttgatgacctaaaacaacaa
cagcagcttggtttcttaagtcgtgaaccacgctgggcaactgcttataaattcccggca
caagctgcattaactacagttgagcagattgactggcaagtagggcgtacagggactttg
acccctgtagcacgcttaaaccctgtttttgtgggtggtgtgactgtttctaacgtaacg
ttgcataatattggggaaattcatcgtctggatgtacgcattggcgatacggtaagtgta
tatcgtacgggtgacgtgattcctaaagtagaaaaagtttggccggagttccgtcctgct
gaagcagaagttgttcatttaccagagtcctgcccagtatgtgcttcgcctgtagtgatg
cctgaaggtgaggctctcgcacgttgttcaggcggtttatattgtgccgcacagcgtatt
gaagccattcgtcactttgtatcgcgtaaagcgatggatatcgagggcttgggagatcgt
tgggtagaatctttattacgtctcgatttacttaaagatgttgctgatatttaccatttg
catgagcacagagaaactctcttgggcatcgaaaaaatgggagaaaagtcagtacagaac
ctaatagatgcgattgaagcaagtaagaaaacaactctagcacgttttatttatgcatta
ggtattcgtggagtaggtgaaacaacggctagaatgttagcaaatacatttcagacgcta
gaggcacttaaagctgcgaatgtagaagctttaaagaaaaccccagatgtaggggatatt
acagcagagtggattgctgactttttcttggcaccgcataacattgaagtactcgatcgt
ttaattgccgcaggaattcattgggatgcaccaacagcaccaacgcgtcaacctttaaat
ggtgaaagctgggtacttacaggtacattagaacaaatgacccgtgatcaggccactcaa
atgctacaagcattaggtgcacgagtaagtgggagtgtttctagcaaaacaaaatgtgta
gttgctggtgagaaggcgggttcaaaattagaaaaagctgcgaagttaggtattcccgtc
atgaatgaaacagatttcttatcactcatggcaggctatgggcaaactttgagctaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (28)   

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