KEGG   Acinetobacter baumannii SDF: ABSDF3242
Entry
ABSDF3242         CDS       T00660                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' chain (Transcriptase beta' chain) (RNA polymerase beta' subunit)
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
abm  Acinetobacter baumannii SDF
Pathway
abm03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:abm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    ABSDF3242 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:abm03021]
    ABSDF3242 (rpoC)
   03400 DNA repair and recombination proteins [BR:abm03400]
    ABSDF3242 (rpoC)
Enzymes [BR:abm01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     ABSDF3242 (rpoC)
Transcription machinery [BR:abm03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     ABSDF3242 (rpoC)
DNA repair and recombination proteins [BR:abm03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      ABSDF3242 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid Peptidase_M23 Apocytochr_F_C
Other DBs
NCBI-ProteinID: CAP02512
UniProt: B0VLZ5
Position
complement(2991840..2996033)
AA seq 1397 aa
MKDLLDIMRKKTDSDGHAPVEFDRIRIGLASPEMIKSWSHGEVKKPETINYRTFKPERDG
LFCAKIFGPVKDYECLCGKYKRMKYKGVICEKCGVEVTTAKVRRERMGHIELASPVAHIW
FLKSLPSRIGLLLDMTLRDIERVLYFESYVVTDPGMTPFEKYQLLNDEEYFTALEEHGDE
FVAKMGAEAVQDLLKDIDLEAEISRLREEIPQTTSETKLKKASKRLKLMEAFKDSNNKPE
WMVMNVLPVLPPDLRPLVPLEGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNE
KRMLQESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVI
TVGPTLRLHQCGLPKKMALELFKPFIFAKLQASGQATTIKAAKKMVERETPEVWDVLASV
IRQHPVMLNRAPTLHRLGLQAFEPILIEGKAIRLHPLVCAAFNADFDGDQMAVHVPLTLE
AQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYITRDAVNAKGEGMVFADTHEVNR
ALATGQVAIHARVKVRVHQTVINENGEREQQTIIVDTTPGRCLLWEVVPEGLSFDMINLE
MTKKNISKLINSCYRKLGLKDTVIFADQLMYLGFRQATRSGVSVGMEDMLIPPTKHTIID
KAETEVREIEQQFEQGFVTAGERYNKVVDIWARTNDQVAKAMMDNLSYTLVKNKQGEDEK
QKSFNSIYMMSDSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIKANFREGLTVLQYFIS
THGARKGLADTALKTANSGYLTRRLVDVAQDLVITEPDCGTRGGLVMTPFIQGGDVIEPL
RDRVLGRVTAEDVRRASDDEVVLPRGTLIDEKIAAQLEEAGVDEVKVRSVIACESTFGVC
AKCYGRDLARGHLVNPGESVGVMAAQSIGEPGTQLTMRTFHVGGAASRTSAANSVQVRNK
GTVRFHNVKTVQHAKGHLVSVSRSGEIGIADELGRERERYKLPYGASILLKDGELVEAGG
IVATWDPHTHPLVTEVAGKARFSQIADGVTATSKTDDATGMTTVEILPVTARPASGKDLR
PAIVLDTTDGGEQFYFLPQNTIVTVRDGETIGVGDVIGRVPQESSRTRDITGGLPRVADL
FEARKPKEHAILAEVSGIVSFGKETKGKNRLVITPDDGSEIYEELIPKWRQINVFEGEHV
NRGETISDGPQNPHDILRLKGEVALTNYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKV
DIIDGGDTSFIKGEQVDYIRVVQENQAVLAQNKFPAKFERQLMGITKASLSTDSFISAAS
FQETTRVLTEAAVTGKEDDLRGLKENVVVGRLIPAGTGLAYHLERRRQEAEAAEHALHND
FSEVDQAFSQALNSEQF
NT seq 4194 nt   +upstreamnt  +downstreamnt
ttgaaagacttgctcgatatcatgcgtaagaaaacggactcagatggtcatgcgccagtt
gagttcgaccgtatccgtattggtcttgcgtcaccagaaatgattaagtcatggtctcat
ggtgaagttaaaaaacctgagacaatcaactatcgtacgttcaaaccagaacgtgatggt
ttgttctgtgccaaaatctttggtccagtaaaagattacgaatgcttgtgtggtaaatac
aagcgtatgaaatacaaaggcgtcatttgtgaaaaatgtggcgttgaagtaactacagca
aaagttcgtcgtgaacgtatgggtcacattgagcttgcttctccagttgcacatatctgg
ttcttaaaatcgttaccatcccgtatcggtttattacttgatatgacacttcgtgatatc
gaacgtgtattgtatttcgaatcatacgttgttactgatcctggtatgacaccatttgaa
aagtatcaacttcttaatgatgaagaatactttactgctctagaagagcacggcgacgaa
tttgttgcaaaaatgggtgcagaagcagttcaagacttgttgaaagacatcgaccttgaa
gctgaaatttcacgtttacgtgaagaaattcctcaaacaacttctgaaacgaagttgaaa
aaagcgtctaagcgcttgaaattgatggaagcattcaaagactcaaacaacaagccagaa
tggatggtaatgaacgtactaccggtacttccaccagatttacgtccattagttccactt
gaaggtggtcgtttcgcgacttctgacttgaacgacttatatcgtcgtgtaattaaccgt
aacaaccgtttgaagcgtcttcttgaccttgcagcgccggacatcatcgtacgtaacgaa
aaacgtatgttacaagagtctgtagatgcgttgcttgataacggtcgtcgtggtcgtgca
attactggttctaacaaacgcccattaaaatctttggcagatatgatcaaaggtaaacaa
ggtcgtttccgtcagaacttgttaggtaagcgtgttgactactctggtcgttcggtaatt
actgtaggtcctactttacgtcttcaccaatgtggtcttccgaagaaaatggcacttgaa
ttattcaagccattcattttcgcgaaattacaagcttcaggtcaggcaacaaccattaaa
gctgcgaagaaaatggttgaacgtgagactccggaagtttgggacgttcttgcatctgta
attcgtcaacatccagtaatgttgaaccgtgcgccaacacttcaccgtttaggtcttcaa
gcatttgaacctattcttattgaaggtaaggcaatccgtcttcacccgctcgtctgtgct
gcgttcaacgcagacttcgacggtgaccaaatggcggtacacgttccattgacacttgaa
gcacagttagaagctcgtgcattgatgatgtcaacaaacaacatcttgtcaccagcaaac
ggtgagccaatcatcgttccttctcaggacgttgtcttgggtctttactacatcactcgt
gatgcagtaaacgcgaaaggtgaaggcatggtgtttgcggatactcacgaagtaaaccgt
gcacttgcaactggtcaagttgcgatccatgctcgtgttaaagtacgtgtgcatcaaaca
gttatcaatgaaaatggtgagcgtgaacagcaaactattattgttgatacaacaccaggt
cgttgcttactttgggaagttgttccagaaggtttaagctttgacatgatcaaccttgag
atgactaaaaagaacatctctaagttaatcaactcttgctaccgtaaacttggtttgaaa
gatacagttatcttcgctgaccaattaatgtacttgggcttccgtcaagcgactcgttca
ggtgtatctgtaggtatggaagacatgttaattccacctacgaaacacacaattattgac
aaagcggaaacagaagttcgtgaaatcgaacaacagttcgaacaaggtttcgtaactgct
ggtgaacgttataacaaagttgtcgatatttgggcgcgtacaaacgaccaagttgctaaa
gcaatgatggataacttgtcttatacacttgtgaaaaacaaacaaggtgaagacgagaag
caaaaatcattcaacagtatctatatgatgtctgactctggtgcccgtggtagtgcggct
cagattcgtcagcttgcaggtatgcgtggtttgatggcaaaaccggatggctcgattatt
gagactccaattaaagcgaacttccgtgaaggtttgacagtactccagtacttcatttca
acacacggtgcgcgtaaaggtttggccgatactgcattgaaaactgcgaactctggttac
ttgactcgtcgtcttgtagacgtagcacaagacttagtaattactgagccagattgtggt
acaagaggtggtctagtgatgactccattcattcaaggtggtgatgtcatcgagccatta
cgtgaccgtgtattaggtcgtgtaactgctgaagatgtacgtcgtgcatctgatgacgaa
gttgtattacctcgtggtacgttaattgacgagaaaatcgcagctcagcttgaagaggct
ggtgtcgatgaagttaaagtacgttctgtaatcgcatgtgaatcaacatttggtgtatgt
gcgaaatgttatggtcgtgatcttgctcgtggtcacttggtaaacccaggtgagtcagta
ggcgtaatggctgcacagtcaatcggtgaacctggtacacagttaacaatgcgtacgttc
cacgtgggtggtgctgcaagccgaacttctgctgcaaacagtgttcaagtacgtaacaaa
ggtactgtacgtttccataacgtaaaaactgtacaacatgcgaaaggccacttggtttca
gtttcacgttcaggtgaaattggtattgccgatgagttaggtcgtgagcgtgaacgctac
aaacttccttacggtgcaagcatcttgttgaaagatggtgagcttgttgaggctggtggt
atcgttgcgacatgggatccgcatacgcatccattggtaacagaagttgctggtaaagca
cgtttcagccaaattgctgatggtgtaactgcaacatcgaaaactgatgatgcaactggt
atgacaactgttgaaatcttgcctgtaacagcacgtcctgcttctggtaaagatttacgt
ccagcaatcgtattagatacaactgatggcggtgaacagttctacttcttaccacaaaac
acaattgtgactgttcgcgacggcgaaacaattggtgtgggtgatgttatcggtcgtgta
ccacaagaatcttcacgtactcgtgatattaccggtggtcttccgcgtgttgctgacttg
ttcgaagcacgtaagccgaaagaacatgcgatcttggcagaagtgtctggtatcgtaagc
ttcggtaaagagaccaaaggtaagaaccgtttagtgattactccagatgacggttctgaa
atttacgaagagttgattccaaaatggcgtcaaatcaacgtgtttgaaggtgaacatgtg
aaccgtggtgaaaccatttctgatggtccacaaaatccacatgacatcttacgcttgaaa
ggtgaagttgctttaactaactacatcgtgaacgaagttcaagacgtttaccgtctccaa
ggtgtaaaaatcaacgataagcacattgaagttatcgtacgtcaaatgttgcgtaaagtt
gatatcatcgatggtggtgatacaagcttcatcaaaggtgaacaagtggattacatccgt
gttgttcaagagaaccaagctgtcttggcgcagaacaagttccctgcgaagtttgaacgt
caattgatgggtattacgaaagcatcgctttctactgactcattcatctctgctgcatcg
ttccaggaaacaactcgtgtgttaactgaagcggctgtaacaggtaaagaagatgattta
cgtggcttgaaagaaaacgttgtagtgggtcgcttgattccagcgggtactggtcttgca
taccacttagagcgtcgtcgtcaagaagcggaagcagcagaacatgctcttcacaatgac
ttcagcgaagtagaccaagcatttagccaagctttaaactcagaacaattctaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (8)   
   Pfam (8)   
All databases (20)   

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