KEGG   Alcanivorax borkumensis: ABO_0949
Entry
ABO_0949          CDS       T00380                                 
Symbol
ligA1
Name
(GenBank) DNA ligase (NAD+)
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
abo  Alcanivorax borkumensis
Pathway
abo03030  DNA replication
abo03410  Base excision repair
abo03420  Nucleotide excision repair
abo03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:abo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    ABO_0949 (ligA1)
   03410 Base excision repair
    ABO_0949 (ligA1)
   03420 Nucleotide excision repair
    ABO_0949 (ligA1)
   03430 Mismatch repair
    ABO_0949 (ligA1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:abo03032]
    ABO_0949 (ligA1)
   03400 DNA repair and recombination proteins [BR:abo03400]
    ABO_0949 (ligA1)
Enzymes [BR:abo01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     ABO_0949 (ligA1)
DNA replication proteins [BR:abo03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     ABO_0949 (ligA1)
DNA repair and recombination proteins [BR:abo03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     ABO_0949 (ligA1)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     ABO_0949 (ligA1)
   MMR (mismatch excision repair)
    DNA ligase
     ABO_0949 (ligA1)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      ABO_0949 (ligA1)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT DNA_ligase_ZBD PTCB-BRCT RNA_pol_A_CTD RNA_ligase Rad9_Rad53_bind
Other DBs
NCBI-ProteinID: CAL16397
UniProt: Q0VR01
Position
1067810..1070143
AA seq 777 aa
MTNNNDPSLQAQSLRDQLNDWSYRYYVQDDPAVPDAEYDRVFRALKDLEAQYPDLVTADS
PTQRVGDVPLDAFEQVQHEVPMLSLDNAFDDEELWAFDKRIRERLDVSEIIDYVAEPKLD
GLAVSLLYENGELVRAATRGDGQTGENITVNARTIRSVPLKLRGNDVPKRLEVRGEVVMP
HAGFEELNARQQEAGLKLFANPRNAAAGSLRQLDSRITASRPLEFYAYSMAQLEGWEHPP
THSAMLDALRDWGLRVNPEIRVCHGVEALLRFYQGILEKREHLDYDIDGVVYKVNRFDWQ
DDLGFVSRAPRWAIAHKFPAQEELTVLNGVDWQVGRTGALTPVARLEPVHVGGVIVSNAT
LHNIDEIQRLDIRIGDTVVVYRAGDVIPKVVRALPERRPANAQGIALPSSCPVCGSEILR
GHDQVVARCTGGLICGDQRREAIKHFASRRAMDIDGLGDKLVDALVDQELITTVADLYRL
KAEQVAGLERMGEKSADNLIAALEASKTVGLGRFLFALGILQIGEETAKNLADCFGDLDS
IRHAPLLLLLAVPDVGLEVAKAIGAFFAESDNEAVIDGLLAQGVSPQASGVPSAAFVKSL
TLAQLLKSAKRLGMNLEGIGDKSLDILGSHFRTVTELSAAAAEGAGAEPKGVRSGVMTQL
AKALAENDWRGRLQDAEKKVADMAARAPQEMESQPLEGQTWVLTGTLEQFTRNQAKQALQ
QLGAKVAGSVSKNTRMVVAGASAGSKLAKAESLGIEVCDEAALLSLLNQHGIDPGAL
NT seq 2334 nt   +upstreamnt  +downstreamnt
gtgacgaataacaacgatccttccctgcaagcacaatccctccgtgatcagcttaacgac
tggtcctaccgttactatgttcaagatgacccggcggtgccggatgcggagtacgatcgg
gtatttcgcgcactgaaagacctggaagcgcaataccctgatctagttaccgcagattcg
cccacccagcgggtgggtgatgtgccgttggatgcgtttgagcaggtgcagcatgaagtg
ccgatgttgagcctggacaatgccttcgatgatgaggagctatgggcctttgataagcgt
attcgtgaacgcttggatgtgagcgaaatcattgattacgtggccgagcccaagctcgac
gggttggcggtgtcgttgctttatgagaacggtgagttggtgcgggcggccacccgcggc
gatgggcaaaccggtgagaatattaccgtgaatgccagaactattcgctcggtgcctctt
aaactgcgtggcaatgatgtgcctaagcggttggaagtgcgcggtgaagtggtcatgccc
cacgctggctttgaggagcttaatgctcgccagcaagaggctgggctaaagctttttgct
aaccctcgtaatgccgcggcaggcagtttgcggcaattggattctcgcatcactgccagc
cgcccgctggaattttatgcctactccatggcccagctggaaggctgggagcatccgcct
acccattcggccatgcttgatgcattacgcgactggggtttacgcgtaaacccggagatt
cgcgtttgtcacggggtagaggccttgctgcgtttttatcagggcatcttggaaaaacgc
gagcatctggattacgacattgatggtgtggtgtacaaggtaaaccgcttcgactggcag
gatgacctgggctttgttagccgggcgccgcgctgggccatcgcccacaaatttcccgcc
caggaagagctcaccgtgctgaacggtgtggattggcaggtaggccgtaccggggcgctg
acgccggtggcgcggttggaaccggtgcacgtgggcggggtgatcgttagcaatgccacg
ctacacaatattgatgaaattcagcgcttggatattcgcattggcgataccgtggtggtg
taccgggccggcgatgtgattcccaaggtggtgcgggcactgccagagcgacgtccggca
aatgcgcaaggcattgctttgccgtcgtcgtgcccggtgtgtggtagtgaaattctgcgt
ggccatgatcaagtggtggcgcgctgtaccggcggcttgatctgtggcgatcaacggcgt
gaagccatcaagcattttgcctcccgccgggccatggatattgatgggctgggtgacaag
ctagtggatgcgctggtggatcaggagctgattaccactgtggccgatctgtaccgcttg
aaagccgagcaggtggcgggcctggagcgcatgggggagaaatcggcggataatcttatt
gcggcgctggaagcctctaaaaccgtggggttaggccgcttcctgttcgcgctggggatc
ctacagattggtgaagaaaccgccaagaatctggctgactgttttggcgatctggatagc
attcgccatgctccgttgttgttgttgctggcggtgccggatgtgggtctggaagtggcc
aaggccatcggtgctttctttgccgaaagtgataacgaggcggtgatcgacggtttgttg
gcgcagggggtgagcccacaggccagcggagtaccgtctgctgcctttgtgaaaagtctg
acgttggcgcaattgttaaagtccgccaagcgattgggcatgaatcttgaagggattggt
gacaagtcactggacatcttgggtagccatttccgcacggtcactgaattgagtgcggcg
gcggctgaaggggcgggcgccgaacccaagggcgtacgctccggggttatgacacagctg
gccaaggcgttggcggaaaatgactggcgaggccggctgcaggatgcggaaaaaaaggtt
gctgatatggctgcccgtgccccccaggaaatggaaagtcagcctttagaagggcagacc
tgggtactgaccgggacgcttgagcagtttacccggaatcaggctaaacaggccctacag
cagctgggcgccaaagtggctgggtcggtgtctaaaaatactcgcatggtggtggcaggt
gcatctgcgggctccaaactggcgaaagcggaatcgttgggcattgaggtatgcgatgaa
gctgcgctactgtccctattgaaccagcacggtattgatccgggagcgttatga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (49)   
   KEGG ORTHOLOGY (1)   
   RefGene (46)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (10)   
   Pfam (10)   
All databases (77)   

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