KEGG T05472: DFR85

Acidianus brierleyi: DFR85_10900

Entry

DFR85_10900       CDS       T05472

Name

(GenBank) RNA-splicing ligase RtcB

K14415

tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]

Organism

abri Acidianus brierleyi

Brite

KEGG Orthology (KO) [BR:abri00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:abri03016]
    DFR85_10900
Enzymes [BR:abri01000]
6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     DFR85_10900
Transfer RNA biogenesis [BR:abri03016]
Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    DFR85_10900
Prokaryotic type
   tRNA splicing ligases
    DFR85_10900

SSDB

Motif

Pfam:

RtcB

Other DBs

NCBI-ProteinID:

AWR95030

UniProt:

A0A2U9IG94

Position

1968532..1969980

AA seq 482 aa
MQISPKRINSYEWRIDKGTQECMKVPVTIFADDVLIDKMKQDLTLKQATNVACLPGVQES
VYVLPDGHQGYGFPIGGIAATAIDEDGVVSPGGIGYDINCGVRLLRTNLDFNDVKPKLKD
LVEEIHKNVPSGVGSEGRVKLSLQELDEVLSRGVDWAISKGYGWSEDMEHIEQKGSWNIA
DPSKVSKVAKQRGAGQLGTLGAGNHFLEVQVVDKIYDENVAKTLGITHEGQVTVMIHTGS
RGLGHQIASDYLQIMERAMKKYNINVPDRELAAIPFNSREGQDYFHAMVAGANFAWSNRQ
LITNWVRESFERVFNTSADKLDLQLVYDVAHNIAKIEEYDINGKRKKVLVHRKGATRAFP
PGSPEIPVDHRSIGQVVLIPGSMGTASYVMVGIPEGRRTWYTAPHGAGRWMSREAAVRNY
PANNVVENLEEKGIIVRAATRRVIAEEAPGAYKDVDRVAKVADEVKIAKLVMRLRPIGVT
KG

NT seq 1449 nt +upstreamnt +downstreamnt
atgcaaatttctcctaaacgtataaattcctatgaatggcggatcgataaaggtacacaa
gaatgtatgaaagttccagttaccatatttgcagacgatgttttgatagacaaaatgaaa
caagatttaactttaaaacaggctactaatgttgcttgtttaccaggagtacaagaatct
gtatatgtacttccagatggacatcaaggatacgggtttcccataggtggaatagccgca
actgcaatagatgaagatggggtagtaagccctggcggaattggctatgatataaactgt
ggagttagactacttagaactaatttagattttaacgatgttaaacctaaactaaaagac
ttagtagaggaaatacataagaatgttcctagtggcgtaggaagtgaaggtagagtaaaa
ctttcattacaagaactagacgaggtactaagcagaggtgtagattgggctataagtaag
ggatatggatggagcgaagatatggaacatatagaacagaaaggtagctggaatatagcc
gatccttctaaagtgagtaaagtagcaaaacaaagaggtgctgggcaattagggacatta
ggtgcaggaaatcattttctagaagttcaagttgtagacaaaatttatgatgaaaatgtt
gctaaaacccttggaataactcatgaaggccaagttactgtcatgatacatactggttct
agaggcctaggtcaccaaatagctagtgactatctacaaataatggaaagagcaatgaaa
aaatataatattaatgtaccagatagagagcttgctgccataccatttaacagtagagaa
ggacaagattatttccatgcaatggtagccggtgcaaattttgcttggagcaatagacag
cttataactaattgggttagagaaagctttgaaagagttttcaatacaagtgcagataaa
cttgatctgcagttagtatacgatgttgctcacaatatagctaaaatagaagaatatgat
attaatggaaaaaggaaaaaagttttagttcatagaaaaggtgctactagggcatttcca
ccaggaagtcctgaaattcctgtagatcatagaagtataggacaagttgttctaatacct
ggaagtatgggtactgcgagttacgttatggtaggaattcctgaaggtagaagaacatgg
tatactgcacctcatggtgctggtagatggatgtcaagagaggcagcagtaagaaactat
cctgcaaataatgtagtagaaaatcttgaggaaaaaggtataattgtaagagctgcaaca
agaagagttatagcagaagaagctcctggcgcatataaagacgtagatagagtagctaaa
gttgctgatgaagttaaaatagctaaacttgtaatgagattaagaccaataggggtaacg
aaaggatga

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (10)   

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