KEGG   Amedibacterium intestinale 9CBEGH2: A9CBEGH2_21710
Entry
A9CBEGH2_21710    CDS       T06427                                 
Name
(GenBank) DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
absi  Amedibacterium intestinale 9CBEGH2
Pathway
absi03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:absi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    A9CBEGH2_21710
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:absi03400]
    A9CBEGH2_21710
Enzymes [BR:absi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     A9CBEGH2_21710
DNA repair and recombination proteins [BR:absi03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     A9CBEGH2_21710
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_C mRNA_cap_enzyme
Other DBs
NCBI-ProteinID: BBK63231
Position
2227880..2228809
AA seq 309 aa
MYEDVHVSPMLIGIEKEAFDDRNFIYELKLDGIRVLAYIENGHVDIRNKRGDKLLYKFPE
LEDMYKQVKQNCILDGELYCFGNGQIDFFEIQKRSLLTDKFKIMMASKQHPASFTAFDIL
YVKEKSLLKTPLLKRKRILSKNVVENHQISISRYVEEQGKALFQLTTQKHLEGIVAKRKD
SLYSCGKRTKDWIKCKNMMDEDFVIVGYIRKDKNMVSLVLAQYDDKELLYKGYVTLGVSL
SYLQKHSNKTNTCPFPSVPNGNEDAVWIFPYLVGCVKFMQHTKNGGMRQPVFKGFREDKT
PEECRVDKK
NT seq 930 nt   +upstreamnt  +downstreamnt
atgtatgaggatgtacatgtatcaccaatgcttataggaattgaaaaagaggcttttgat
gatcgtaattttatatatgaattaaagctggatggtatacgtgttcttgcttatattgag
aatggacatgtagatattcgaaataaaagaggagataaattgctgtataagtttccggaa
ctagaggatatgtataagcaggttaaacaaaattgtattctggatggagaattgtattgt
tttggaaatgggcaaatagattttttcgaaatacaaaaaagaagtttgttaactgataaa
tttaagattatgatggcatcgaaacaacatccagcttcctttactgcctttgatatttta
tatgtaaaagagaaatccctgctgaaaacacctctattaaagaggaaaaggatattaagt
aaaaatgttgtggaaaatcatcaaataagtatatctcgttatgtggaagaacaagggaaa
gcgttgtttcaattgacaacacaaaaacacttagagggtatcgttgcgaaaagaaaagac
agtttgtattcttgcgggaaaaggacaaaagactggataaaatgcaagaacatgatggat
gaagattttgtaatcgttggatatatacgaaaagataagaatatggtttctttggtactt
gcacagtatgatgataaagaattgctgtataaagggtatgtgacactgggtgtttcttta
tcttatttgcaaaaacacagcaataaaacaaatacctgtccttttcccagtgttccaaac
gggaatgaagatgcagtttggatttttccttatttagtagggtgtgtaaaatttatgcag
catacgaaaaatggcggtatgagacagcctgtatttaaagggtttcgagaagataagacg
cctgaagaatgcagagtggataaaaaataa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (3)   
   Pfam (3)   
All databases (17)   

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