KEGG   Aliarcobacter butzleri ED-1: ABED_0220
Entry
ABED_0220         CDS       T01823                                 
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
abt  Aliarcobacter butzleri ED-1
Pathway
abt03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:abt00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ABED_0220
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:abt03019]
    ABED_0220
   03016 Transfer RNA biogenesis [BR:abt03016]
    ABED_0220
Enzymes [BR:abt01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     ABED_0220
Messenger RNA biogenesis [BR:abt03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     ABED_0220
Transfer RNA biogenesis [BR:abt03016]
 Prokaryotic type
  tRNA degradation factors
   ABED_0220
SSDB
Motif
Pfam: RNB CSD2 EPSP_synthase HTH_25
Other DBs
NCBI-ProteinID: BAK69937
Position
222460..224313
AA seq 617 aa
MLKELFIKIQTNLKDYTKEELIEIEKFIKEEIVLRNTNNEFELNSKYKIATLKVEKNFAI
LEDLVTSLKNIKIELDELNGAFDGDLVIAKRVFNPKSKIKAKIIKIISSKKAEILVYVKD
RAFYTVKENIRIENKKALTFNENDVLVVDNKSFEVIKNVGNVSDSKVDEFISLYLYKELY
RLEKLDFEIDAKMDDKNQRVDLRELPFCTIDPNSAKDHDDAIYFDKDENILYVAIADVSY
FVKEGSDLDKLAFKKSTSIYLPSKVLPMLPPILSEEMCSLKEGLDRYSFVFKLHLDLEKL
SVKKAELFEAVINSHKNFSYGRIDRVIEGHLDLYSKLDKEIFDYLIPLYEITKKFRKKRL
EKGYDFRTTENRLKLRNSELESIEVETSTASHQLIEECMLLANIEASKKVSNIAIFRVHE
EPSFKAISKLVDDVNILGVNVKLQKDVHETITHIQKSAKTSMLSAEVDELIIQSQTQAKY
SSKNLGHFGLGFSSYSHFTSPIRRYSDLVLHRILKTKQTPKNIDEICEHISLNERKVDQL
VWDFEDRKYARWANKHIGEELKVKVVDIEKAKAVCYEKIIGMKVVLENYKGQKLFSKMRV
KIKSADLVTKVIVATIV
NT seq 1854 nt   +upstreamnt  +downstreamnt
ttgttaaaagaactatttataaaaatacaaacaaaccttaaagattatacaaaagaagag
ttaattgaaatagaaaaatttattaaagaagagattgttttaagaaatacaaataatgaa
tttgagttaaattcaaagtataaaatagcaactttaaaagtagaaaaaaactttgctatt
ttagaagatttagtaacttctttaaaaaatataaaaatagaattagatgaattaaatggt
gcttttgatggagacttagtaattgcaaaaagagtatttaatccaaaaagtaaaataaaa
gcaaagattataaaaattattagtagcaaaaaagcagaaattttagtatatgtaaaagat
agagctttttacacagtaaaagaaaatataagaattgaaaataaaaaagcgttaacattt
aatgaaaatgatgttttagttgttgataacaaatcttttgaagttattaaaaatgttggt
aatgtaagtgattctaaagtagatgaatttatatcattatacctttacaaagagctttat
cgattagaaaaacttgattttgaaatagatgcaaaaatggatgataaaaatcaaagggtt
gatttaagagaacttccattttgtacgattgacccaaatagtgcaaaagatcatgatgat
gcgatatattttgacaaagatgaaaatattttatatgttgctattgcagatgtttcatat
tttgtaaaagaaggaagtgatttagacaaacttgcttttaaaaaatcaacatcaatttat
cttccaagtaaagttttaccaatgcttcctccaattttaagtgaagaaatgtgctcttta
aaagagggattagatagatactcatttgtttttaaacttcatttagatttagaaaaattg
agtgtaaaaaaagcagaactttttgaagcagttataaattcgcataaaaatttttcttac
ggaagaattgatagagtaatagaaggacatttggatttatactcaaaacttgataaagaa
atttttgattatttaattcctttatatgaaattacaaaaaagtttagaaaaaaaagactt
gaaaaaggttatgattttagaactactgaaaataggttaaaattaagaaatagtgaactt
gaatcaatagaagtagaaacttcaacagcttctcatcaactaattgaagagtgtatgctt
ttggcgaatattgaagctagtaaaaaagtatcaaatattgcaatttttagggttcatgaa
gagccgtcatttaaagcaatttcaaaacttgttgatgatgtaaatattttgggagtaaat
gtaaaacttcaaaaagatgttcatgaaactataactcatattcaaaaaagtgcaaaaact
tctatgttaagtgcagaagttgatgaacttattattcaatctcaaactcaagcaaaatat
agttcaaaaaatttagggcattttggtttaggattctcttcttattcgcattttacatct
ccaattagaagatattcggatttagttttacataggattttgaaaacaaaacagacacca
aaaaatatagatgagatttgtgaacatatatctttaaatgaaagaaaagtagatcagctt
gtttgggattttgaagatagaaaatatgcaagatgggctaataaacatataggtgaagag
ttaaaagtaaaagttgttgatattgaaaaagcaaaagctgtttgttatgaaaaaataata
ggaatgaaagttgtactagaaaattacaaaggacagaaattattttctaaaatgagagtg
aaaataaaatctgccgatttagtaacaaaagttatagtggctactattgtatag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (14)   

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