KEGG T01823: ABED

Aliarcobacter butzleri ED-1: ABED_1112

Entry

ABED_1112         CDS       T01823

Name

(GenBank) polynucleotide phosphorylase/polyadenylase

K00962

polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]

Organism

abt Aliarcobacter butzleri ED-1

Pathway

abt03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:abt00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ABED_1112
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:abt03019]
    ABED_1112
   03016 Transfer RNA biogenesis [BR:abt03016]
    ABED_1112
Enzymes [BR:abt01000]
2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     ABED_1112
Messenger RNA biogenesis [BR:abt03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     ABED_1112
Transfer RNA biogenesis [BR:abt03016]
Prokaryotic type
  tRNA degradation factors
   ABED_1112

SSDB

Motif

Pfam:

RNase_PH RNase_PH_C S1 KH_1 PNPase KH_2 MIC19_MIC25

Other DBs

NCBI-ProteinID:

BAK70829

Position

1138042..1140219

AA seq 725 aa
MSKVCEFELNGKQEIFEFEKVAKQSNGAVLAKIGNAVVLATVVSEFDNPVSEDFTPLTVQ
YIEKTYAAAKLPGGFIKREGKPSDFETLTSRVIDRSLRPLFPKGYVYPTTITVMVLSADK
NVDLQTLSLNAANAALYTSNLPIKKSVCGVRVGKIENTLVINPTNEQLENSTLDLYVAGS
KDELLMIEMKTISSSELVEIDIEAFTKIHNTNEMDEDALVEAIAFAQNALKEANLTYEKA
FEEVSKEKVEVELVKFTIEESVINYVRDNFSNDIKEAIKKLAKSERATQLKDVAKMISKN
EYCSSNEIEFNTIYEAVSVVKREIVRAMIVNERVRADGRGLKDVRPISIETNILPSTHSS
CLFTRGETQALVIGTIAGPKDGQMYEVLTDKSTSMENFMVHYNFPGFSVGEAKPMFGVGR
RELGHGNLAKKALEATIDKDYNETVRLVSEILESNGSSSMATVCGGSLALKAAGIPISDL
VAGVAMGMVVENDKYAILTDIMGLEDHDGDMDFKVAGTSKGITALQMDIKLGGIELSVLK
EALLQAKEGRTHILSLMKDAEKDIVPSNALPLIEQFAIDPSKIMVVIGKAGATIKEIIEK
FTVSIDLDKENGTVKVSGGNKQNILDACEHIKTISNNASSKKDASKNIDFEKLYSEDEVV
IGKVERLADFGAFILLPKGGEGLLHISKISKDRVKNVADVLSIGQELEVKVLKVKKDRIE
LSSAN

NT seq 2178 nt +upstreamnt +downstreamnt
atgtcaaaagtttgtgaatttgaattaaatggaaaacaagagatttttgaatttgaaaaa
gtagctaaacaatcaaatggtgctgttctagcaaaaatagggaatgctgttgttttagca
actgttgtaagcgagtttgataatcctgttagtgaagatttcactcctttaacagttcaa
tatattgaaaaaacttatgctgcagcaaaattgccaggaggatttataaaaagagaagga
aaacctagtgattttgaaacattaacatcaagagtaattgatagaagtttaagaccactt
ttccctaaaggttatgtttatcctacaacaattacagttatggttttaagtgctgataaa
aatgttgatttacaaactttatctttaaatgcagcaaatgcagctttatatacttcaaat
ttaccaattaaaaaatcagtttgtggagttagagttgggaaaatcgaaaatactcttgta
attaatccaacaaatgaacaattagaaaattcaactttagatttatatgtagctggttct
aaagatgaattattgatgattgagatgaaaactatctcttcaagtgagcttgtagagatt
gatattgaagcatttactaagattcataatacaaatgagatggatgaagatgctttagtt
gaagcaattgcatttgcacaaaatgctttaaaagaggctaatttaacttatgaaaaagct
tttgaagaagtttcaaaagaaaaagttgaagtagaattagttaaatttactattgaagaa
tctgtaataaattatgtaagagacaatttttctaacgatattaaagaagctatcaaaaaa
ttagcaaaaagtgaaagagcgactcaattaaaagatgttgcaaaaatgatttcaaaaaat
gagtattgtagctcaaatgaaatagaatttaacactatttatgaagctgttagtgttgta
aaaagagaaattgtaagagctatgattgtaaatgaaagagtaagagcagatggaagaggt
ttaaaagatgtaagaccaatttcaatagaaacaaatattttaccttctacacattcttct
tgtctttttacaagaggtgagacacaagcacttgttattggaacaattgctggacctaaa
gatggacaaatgtacgaagttttaacagacaaatcaacttcaatggaaaactttatggtt
cattataattttccaggatttagtgttggtgaagcaaaacctatgtttggagtaggaaga
agagaattaggacatgggaatttagctaaaaaagctttagaagcaactattgataaagat
tataatgaaactgtaagattagtttctgaaatacttgaatcaaatggttcttcatctatg
gcaacagtttgtggtggttctttagcattaaaagcagctggaattccaatttctgattta
gttgctggtgttgcaatgggaatggttgttgaaaatgacaaatatgctattttaactgac
attatgggattagaagatcatgatggtgatatggattttaaagtagcaggaacatctaaa
ggaattacagctttacaaatggatataaaattaggtggaattgaattatctgttttaaaa
gaagctttacttcaagcaaaagaaggacgaactcatattttatctttaatgaaagatgct
gaaaaagatattgttccaagtaatgctttgcctttaattgaacaattcgctattgatcca
agtaaaataatggtagttataggaaaagcaggagctacaataaaagagattatagaaaaa
tttacagtatctattgatttagataaagaaaatggtacagtaaaagtaagtggaggaaat
aaacaaaatattcttgatgcttgtgagcatattaaaactatttcaaataatgcttcttca
aaaaaagatgcttcaaaaaatatagattttgagaaactttattcagaagatgaagttgta
attggtaaagtagaaagattagcagattttggagcgtttattcttttaccaaaaggtggt
gaagggcttttacatatttcaaaaatatcaaaagatagagtaaaaaatgttgccgatgtt
ttaagtatcgggcaagaattagaagtaaaagtactaaaagtaaaaaaagatagaatagaa
ttatcttcagcaaattaa

All links

Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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