KEGG   Acidobacterium capsulatum: ACP_1035
Entry
ACP_1035          CDS       T00868                                 
Name
(GenBank) Hfq protein
  KO
K03666  host factor-I protein
Organism
aca  Acidobacterium capsulatum
Pathway
aca02024  Quorum sensing
aca03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:aca00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ACP_1035
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    ACP_1035
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aca03019]
    ACP_1035
   03036 Chromosome and associated proteins [BR:aca03036]
    ACP_1035
Messenger RNA biogenesis [BR:aca03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     ACP_1035
Chromosome and associated proteins [BR:aca03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    ACP_1035
SSDB
Motif
Pfam: Hfq LSM
Other DBs
NCBI-ProteinID: ACO31568
UniProt: C1F408
Position
complement(1190889..1191209)
AA seq 106 aa
MDNKPAQNIQDTFLNTVRKDKTPITIYLVSGVKLTGKIRSFDKYSVLLENNSQEQLIFKH
AISTVVSSRSVLHGDHRPGVAGHGAPPISPTPPAGTHSTPGESSGA
NT seq 321 nt   +upstreamnt  +downstreamnt
atggataacaagccggcacagaacattcaggacaccttcctgaacacggtccgcaaagat
aaaacccccatcacgatttatctggttagcggcgtcaaactcacggggaaaattcgctcc
ttcgataaatattcggtgctgttggagaacaacagccaggaacaattgattttcaagcac
gccatctccacggtggtgagcagccgttcggtgctgcatggcgatcatcgccccggcgtt
gccgggcatggtgcgccgccaatcagcccaacgcctccggccgggacgcattcgacaccg
ggcgagtcctcgggagcctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   RefGene (3)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (2)   
   Pfam (2)   
All databases (16)   

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