KEGG   Aeromonas caviae: VI35_01315
Entry
VI35_01315        CDS       T05190                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
acav  Aeromonas caviae
Pathway
acav03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:acav00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    VI35_01315 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:acav03021]
    VI35_01315 (rpoB)
   03400 DNA repair and recombination proteins [BR:acav03400]
    VI35_01315 (rpoB)
Enzymes [BR:acav01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     VI35_01315 (rpoB)
Transcription machinery [BR:acav03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     VI35_01315 (rpoB)
DNA repair and recombination proteins [BR:acav03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      VI35_01315 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_2 RNA_pol_Rpb2_45 Fibritin_C
Other DBs
NCBI-ProteinID: ATP89245
UniProt: A0A3N9Y106
Position
282080..286108
AA seq 1342 aa
MVYSYTEKKRIRKDFGKRDQVLDTPYLLSIQLDSFKQFIEADPEGEYGLEAAFRSVFPIT
SYSGSAELQYVSYRLGEPVFDVKECQIRGVTYSAPLRVKLRMVLYDREAAAGTVKDIKEQ
EVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDKGKTHSSGKVLYNARVIPYR
GSWLDFEFDAKDNLFVRIDRRRKLPASIILRALDFSSEEILATFFETIGFEVKDGKLMMD
LVPERLRGETATFDIIANGAVVVETGRRVTARHIRQLEKDGITQIEVPVEYVVGKVAAKN
YAHPQTGEMVVTANQALSLEAVANLSQAGFKHFEVLFTNELDHGAYMSETLRIDSSSSRL
EALVEIYRMMRPGEPPTREAAEQLFENLFFSSERYDLSTVGRMKFNRRLGREDETGVGVL
TKDDIVEVMKRLIDIRNGNDEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDLINAKPISAAVKEFFGSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRLCPIETPEGPNIGLINSLSVYSRTNEYGFLETPYRKVIDGVIT
DEVDYLSAIEEGKYVIAQANAATTEDGRLKDELIPCRHKGESTFMNADQIQYMDVSPQQI
VSVAAALIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERAVAVDSGVTVVAKR
GGMIDYVDASRIVIKVNEDELLPGEAGIDIYSLTKYTRSNQNTCINQRPCVMLGEPVMAG
DVLADGPSTDLGELALGQNLRVAFMPWNGYNFEDSILVNERVVQEDRLTTIHIQELACIS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYVGAEVKGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVYGTVVDVQVFTRDGVEKDKRAKEIEEMQLKEAKKDL
TEEFKILEDGIFGRSRNLLLAAGYSEDRLNKLDRSKWFELAIEDEAKQIELEQIAEQHVE
LKAEFDKKFENKRRKIIQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIC
PVEDMPHDEYGRPVDIVLNPLGVPSRMNIGQILEVHLGLAAKGIGEKIDRMIKEQRELHE
MREFLQQVYDLGEKDSQQVNIAELSDDDVRTLVGNLRKGLPVATPVFDGAKEREIKALLK
LADLPESGQISLFDGRTGNAFERKVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMP
ESFNVLLKEIRSLGINIELDEE
NT seq 4029 nt   +upstreamnt  +downstreamnt
atggtttactcttataccgaaaaaaaacgcatacgtaaggacttcggtaagcgagaccag
gtactggacacgccttatctgttgtccattcagctggactccttcaagcagttcatcgag
gctgacccggaaggtgagtacggcctagaagccgccttccgtagcgttttcccgatcacc
agttactccggtagtgctgagcttcagtatgtcagctatcgcctgggtgagccggtattt
gacgtaaaagaatgccagatccgtggagtgacctactccgcgccgctgcgtgtcaagctt
cgtatggttctgtacgaccgtgaagcagctgccggcaccgtcaaagatatcaaggaacaa
gaagtatacatgggcgagattccgctcatgaccgagaacggcacctttgtcatcaatggt
accgaacgggttatcgtctcccagctgcaccgcagcccgggcgtcttcttcgaccacgat
aaaggcaaaacacattcatccggtaaggtactgtataacgcccgcgttatcccctaccgt
ggctcctggctggacttcgagttcgatgcgaaagacaacctgtttgtccgtatcgaccgt
cgtcgcaaactgccggcctccattattctgcgcgccctggacttcagttccgaagaaatc
ctggccaccttcttcgagaccatcggtttcgaggtcaaggatggcaagttgatgatggat
ctggtgcccgagcgcctgcgtggcgagaccgcgaccttcgacatcattgccaatggcgcc
gtggtggttgaaaccggtcgtcgtgtcactgcccgtcacatccgtcagctggaaaaagac
ggcatcacccagatcgaggtgccggtagagtatgttgttggcaaagttgcagccaagaac
tacgcgcacccgcagactggtgagatggtcgtgactgccaaccaggcgctgagcctggaa
gcggttgccaacctgtcccaagccggcttcaagcacttcgaggttctgttcaccaacgaa
ctggatcacggtgcctacatgtccgagaccctgcgtatcgactccagctccagccgcctg
gaagccctggtcgagatctatcgcatgatgcgtccgggcgagccgcccactcgtgaagcg
gccgagcagctgttcgagaacctgttcttctcttccgagcgttacgacctgtctaccgta
ggtcggatgaagttcaaccgccgtctgggtcgtgaagacgagaccggcgttggcgtgctg
accaaggacgatatcgtcgaggtcatgaagcgcctgatcgacatccgtaacggtaacgac
gaagtggacgatatcgaccacctgggtaaccgtcgtattcgttccgtcggtgaaatggcc
gagaaccagttccgtgtcggtctggtccgtgtcgagcgtgcggtgaaggagcgcctgtct
ctgggcgatctggacaccctgatgccgcaggatctgatcaacgccaagccgatctccgcc
gcggtcaaagagttcttcggttccagccagctgtcccagttcatggaccagaacaacccg
ctgtccgaagtgacccacaagcgccgtatctccgcgctgggcccgggcggtctgacccgt
gagcgtgccggtttcgaagttcgagacgtacacccgacccactacggtcgtctgtgcccc
atcgaaacgccggaaggtccgaacatcggtctgatcaactcgctgtccgtgtattcccgc
accaacgagtacggtttcctcgagaccccgtaccgcaaggtgatcgacggtgtgatcacc
gacgaagtggattacctgtctgcgattgaagaaggcaagtacgtgatcgcacaggccaac
gccgcgaccaccgaagatggccgtctgaaagatgaattgatcccgtgccgtcacaaaggt
gaatccacctttatgaacgccgaccagatccagtacatggacgtgagcccgcaacagatc
gtctctgtggcagcggccctgatcccgttcctggaacacgatgacgcgaaccgcgcattg
atgggttcaaacatgcaacgtcaggctgtaccgaccctgcgcgcggacaagccgctggta
ggtaccggtatggaacgcgcagtggccgttgactccggtgtgaccgtagtggccaagcgt
ggcggcatgatcgactatgtcgatgcctcccgtatcgttatcaaggtcaacgaagatgag
ctgctgcctggcgaagccggcatcgacatctacagcctgaccaaatacacccgttccaac
cagaacacctgtatcaaccagcgtccgtgcgtgatgttgggtgagccggtgatggcgggc
gacgtactggctgacggcccgtccaccgatctcggtgaactggcgctgggtcagaacctg
cgcgtcgcgttcatgccgtggaacggttacaacttcgaagactcgatcctggtgaacgag
cgtgttgttcaggaagatcgcctgaccaccatccacatccaggaactggcctgtatctcc
cgtgacaccaagctgggtccggaagagatcactgctgacatcccgaacgtgggtgaagcc
gctctgtccaagctggacgagtccggtatcgtctacgtgggtgccgaagtgaagggcggc
gacattctggtcggcaaggtgactccgaaaggtgaaacccagctgactccggaagagaag
ctgctgcgcgccatcttcggtgagaaggcgtccgacgtgaaggactcttctctgcgtgtg
ccgaacggtgtgtacggtaccgtggttgacgtgcaggtctttacccgcgatggcgtggaa
aaagacaagcgcgccaaagaaatcgaagagatgcagttgaaggaagcgaagaaggacttg
accgaagagttcaagatcctggaagacggcattttcggccgttcccgcaacctgctgctg
gccgccggttacagcgaagatcgtctgaacaagctcgatcgttccaagtggtttgagctg
gccatcgaagatgaagccaagcaaatcgagctggagcagatcgctgaacagcacgttgag
ctgaaggccgagttcgacaagaaattcgagaacaagcgtcgcaagatcatccagggcgat
gacctggcgccgggcgtactgaagatcgtcaaggtctatctggccgtcaagcgtcgcatc
cagccgggtgacaagatggcgggccgtcacggtaacaagggtgttatctccaagatctgt
ccggtcgaggatatgccccatgacgagtacggccgtccggtcgacatcgtactgaaccca
ctgggtgtaccgtcgcgtatgaacatcggtcagatcctcgaagtgcacctgggcctcgcg
gccaagggcatcggcgagaagatcgaccgcatgatcaaagaacagcgcgagctgcacgag
atgcgcgagttcctgcaacaggtctatgacctgggcgagaaggactcccagcaagtgaac
attgccgaactgtctgacgacgacgtgcgtaccctggtgggtaacctgcgtaagggtctg
ccggtggctacacctgtctttgatggtgccaaagagcgcgaaatcaaagccttgctgaag
ctggctgatctgccggaatccggtcagatctccctgttcgacggtcgtaccggtaacgcc
ttcgagcgcaaggtcaccgtgggttacatgtacatgctgaagctgaaccacctggtagac
gacaagatgcacgcgcgttctaccggttcctacagcctggttacccagcagccgctgggt
ggtaaggcgcagttcggtggtcagcggttcggtgagatggaagtgtgggccctggaggct
tacggtgcggcatataccctgcaggaaatgctgaccgtcaagtctgacgatgtgaacggc
cgtaccaagatgtacaagaacatcgtggatggcgaccaccgtatggagccgggcatgccc
gaatccttcaacgtattgctgaaggaaatccgctctctgggtatcaacatcgagctggac
gaagagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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