KEGG   Atta cephalotes (leaf cutting ant): 105617050
Entry
105617050         CDS       T04923                                 
Name
(RefSeq) TFIIH basal transcription factor complex helicase XPD subunit
  KO
K10844  DNA excision repair protein ERCC-2 [EC:5.6.2.3]
Organism
acep  Atta cephalotes (leaf cutting ant)
Pathway
acep03022  Basal transcription factors
acep03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:acep00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    105617050
  09124 Replication and repair
   03420 Nucleotide excision repair
    105617050
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:acep03021]
    105617050
   03400 DNA repair and recombination proteins [BR:acep03400]
    105617050
Enzymes [BR:acep01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     105617050
Transcription machinery [BR:acep03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     105617050
DNA repair and recombination proteins [BR:acep03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     105617050
SSDB
Motif
Pfam: HBB DEAD_2 Helicase_C_2 DEAD ResIII AAA_11 nSTAND3 UvrD-helicase
Other DBs
NCBI-GeneID: 105617050
NCBI-ProteinID: XP_012054020
UniProt: A0A158N912
Position
Unknown
AA seq 735 aa
MLELKRGLDAKGHCLLEMPSGTGKTITLLSLIVAYMLEHPLDVTKLIYCSRTVPEIEKVI
EELKKLIDYYEKETKSKPKIVGLVLSSRKNMCIHPEVSREREGKIVDGRCHSLTASYVRE
RHNYDESTPICNFYEGFDMEGREQIMPPGIYSIDDLKEYGKDRNWCPYFLARFTILHAQI
VVYSYHYLLDPKIAETVSKELSRSSIVIFDEAHNIDNVCIDSMSVKINRKTMEKSTANIQ
LLEKTVAEMRQEDVNKLKEEYERLVEGLRDAQFQRETDVILANPILPNEILEEVIPGNIR
NAEHFVSFLKRFVEYLKTRLRVQHVVQESPAAFLKDIQAKVAIERKPLRFCAQRLASLLR
TMEITDLTDFSPIILVTHLATLVSTYTHGFTIIVEPFDDKTPTVLNPILHFSCLDSSIAI
KPIFDRFQSVVITSGTLSPLDMYPKVLNFHPVIMSSFTMTLARPCLLPMIVAKGNDQVAI
SSKYETREDVAVIRNYGQLLVEFAATVPDGLVCFFTSYLYMESVVAAWYDQGVVDQLQRH
KLLFIETQDSAETSLALINYIKACENGRGAVLLSVARGKVSEGVDFDHHLGRAVLMFGIP
YVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGIMVFADKRF
SRIDKRSKLPKWIQEHLNDSLCNLSTEEAIQISKRWLRQMAQPFTRENQLGLSLLTREQL
EKEEAAKIEQKAQQN
NT seq 2208 nt   +upstreamnt  +downstreamnt
atgctcgagctcaaacgtggcctggatgccaagggacattgtttgttagagatgccttca
ggcactggcaaaacgataactttattgtcactcattgtggcatatatgctggagcatcca
ttagatgtaacaaagttaatttattgttcccggacagtgccagagatagaaaaagttata
gaggagctaaagaagcttatagattattatgagaaagaaaccaaaagcaagccaaaaatt
gttggtctagttcttagctcgcgtaagaatatgtgtatccatcctgaggtcagtagagaa
cgagaaggtaaaattgtagatggccgttgtcattctcttactgcatcatatgtacgagaa
agacataattatgacgaatctactccgatttgtaatttttatgaaggatttgatatggag
ggcagagaacaaattatgcctcctggtatttactccatcgatgatttaaaagaatatgga
aaagatcgtaattggtgtccatacttcctcgcaagatttacaatcttgcatgcacagatt
gtagtgtatagttatcattatttattggatccaaagatcgctgagactgtatccaaagaa
ttaagcaggagttcaatagttatctttgatgaggctcataatattgataatgtctgcatt
gattccatgagtgtaaagataaacagaaagacaatggagaaaagtacagctaacatacaa
ctcttagagaaaactgtagccgaaatgagacaagaggatgtaaataaattgaaggaagag
tacgaaagattggtcgaaggtctgagagatgctcaattccagagagaaactgatgtcatc
ttagccaaccctattttaccgaacgaaatacttgaagaagtcattcccggtaacataaga
aatgccgagcattttgttagctttttgaaacgattcgttgaatatttaaaaactcgctta
cgtgttcaacacgtcgtgcaagaatcacccgcagcatttcttaaggatatccaagcgaag
gtcgctattgaacgaaaaccattgcgattttgtgcccaaagattagcgtccctcttacgt
actatggagataacagatctaacagatttctctccaataatcttagtgacgcatcttgcg
acattagtctctacatacacgcacggcttcacaattatagtggaaccattcgacgataaa
acgccaacagtattgaatccaattttacattttagctgtctagattcttccattgctatc
aaacccatattcgatagatttcagtccgtggtaatcacttctgggacgttgtccccattg
gatatgtatcccaaagttttaaactttcatccggttataatgtcgtcctttacaatgaca
ttagctagaccgtgtcttttacccatgattgttgctaaaggtaatgatcaagttgccatt
tcgtcaaaatacgaaacacgagaagatgtggctgttataagaaattatggtcaattgtta
gtcgaatttgctgcgacagtgcccgacggcttagtttgcttttttacatcatatttatat
atggaatccgtagtagccgcatggtacgatcaaggagttgtggatcaacttcagaggcat
aaattattattcattgaaactcaggattcagcagaaaccagtttagctctgatcaattac
ataaaggcttgcgagaacggtagaggagctgttctactctcggtggctcgtggaaaagta
tccgaaggcgtcgactttgatcatcatttggggagagccgtgctgatgtttggcatacct
tacgtgtacacacagtcacgtatcttaaaggcgcgtttggaatatctcagagatcagttt
caaattcgagaaaacgatttcttaacttttgatgccatgagacacgccgcacaatgcgta
ggacgtgcgatcagaggaaaaacagattacggtatcatggtgtttgcagataagagattt
tcaagaatagataaacgaagcaaattaccaaaatggatacaggaacatttaaatgatagc
ttatgcaacttatcaaccgaagaagctatacaaatcagtaaaagatggttacgacaaatg
gcacagccattcacgcgtgagaaccaacttggattgtcattattgacaagagaacaactt
gagaaagaagaggctgccaagattgaacaaaaggctcagcaaaattga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (23)   

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