KEGG T05544: DS739

Acetobacter sp. JWB: DS739_03975

Entry

DS739_03975       CDS       T05544

Symbol

topA

Name

(GenBank) type I DNA topoisomerase

K03168

DNA topoisomerase I [EC:5.6.2.1]

Organism

acet Acetobacter sp. JWB

Brite

KEGG Orthology (KO) [BR:acet00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:acet03032]
    DS739_03975 (topA)
   03400 DNA repair and recombination proteins [BR:acet03400]
    DS739_03975 (topA)
Enzymes [BR:acet01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     DS739_03975 (topA)
DNA replication proteins [BR:acet03032]
Prokaryotic type
  DNA Topoisomerases
   DS739_03975 (topA)
DNA repair and recombination proteins [BR:acet03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      DS739_03975 (topA)

SSDB

Motif

Pfam:

Topoisom_bac Toprim_C_rpt Toprim zf-C4_Topoisom

Other DBs

NCBI-ProteinID:

AXC26019

Position

complement(822647..825337)

AA seq 896 aa
MTDVVVVESPAKAKTINKYLGDGYTVLASFGHVRDLPPKDGSVLPDEDFTMKWQSDERGM
KQVAAIAKALKGAHRLYLATDPDREGEAISWHVRAMLEERKALKGVDVQRVTFNEITKSA
IRYAMEHPRDLDFPLIEAYLARRALDYLVGFTLSPVLWRKLPGSRSAGRVQSVALRLICE
REAEIEVFKPREYWSVIASLLTPAGAAFTARLTHLNGKKLDQFDLHNAELAEAAKKAVEA
ENLAVKSIERRKVRRNPQPPFTTSTLQQEASRKLGMSAQTTMRTAQQLYEGMDLGGETVG
LITYMRTDGVTMAQEAINAIRQHIGQKIGTEYVPAKPRIYTSKVKNAQEAHEAVRPTDVS
RTPDSVARFLNNDQRRLYELVWKRAVASQMESASLDQVAVDIAGPSGQTVLRANGSIITF
EGFLKLYREGRDDTEKAADDDARMLPSMQEKDPLKREKVDAEQHFTQPPPRYSEASLVKK
MEELGIGRPSTYASILTVLQDRSYVRLENRRFIPEARGRLVTAFLVSFFERYVDTGFTAS
LEELLDDISGGRAQWKQVLAAFWNDFSKAVSGTKELTITDVLNALDKDLGPFFFPDRADG
SDPRVCPSCGTGRLGLKLGRYGAFIGCSNYPECQYTRRLTADSAEEGDDAALKDGMRLLG
QNPETGEDITVRQGPWGLYVQQGEPNPEDKKAKPKRASLPKNINGESITLDQALGLLSLP
RLVGVHPETGEPIQAGLGRFGPFVKMGAVYGSLDKDDDVLTIGLNRAVDALAKKLASIRN
LGVHPKDGEPVMVRKGRFGPYVQHGQIVATLPRGTDMDAVTLDEAVALLVDKGKPLKAKA
GAKKKATTKTTAKKKTATKSTAKADEDGAEKAAPKKKAPAKKKATTTTRKKKAETE

NT seq 2691 nt +upstreamnt +downstreamnt
atgactgacgttgttgtggtcgaatcgcccgcaaaggcaaaaacgatcaacaaatatctg
ggtgatggctacacggtgctggcctccttcgggcatgtgcgcgatctgccacccaaggat
ggctccgtgctgccggatgaagacttcaccatgaagtggcagtctgatgaacggggcatg
aagcaggttgccgccattgccaaggcgcttaaaggcgcccaccgactgtatctggccact
gaccctgaccgcgagggtgaagccatttcgtggcatgtgcgcgctatgctggaagaacgc
aaagccctgaaaggggtggatgttcagcgcgttacgtttaacgaaattaccaaatccgcc
attcggtacgccatggagcacccgcgggatctggatttcccgctgattgaagcctatctg
gcccgccgggcgctggattatctggtgggctttacgctttcccccgtgttgtggcgcaaa
ctgcccggctctcgcagtgcggggcgtgtgcaatctgtggcgctccgcctgatttgtgag
cgcgaagccgagattgaggtttttaagccgcgggaatactggagcgttattgcatcgctg
cttacccctgcgggtgccgcctttaccgcacggctaacgcatctaaacggcaaaaagctg
gatcagtttgatctgcacaacgccgaactggccgaagctgccaaaaaagcggtggaagct
gaaaaccttgccgtaaaatctattgagcgccgcaaggttcgccgcaacccgcagccaccg
ttcaccacctctacgttgcagcaggaagcctcccgcaagttgggcatgagcgcgcaaacc
accatgcgcaccgcccagcagctttatgaaggcatggatctgggcggtgaaactgtaggt
ttgatcacctatatgcgaaccgatggcgtgacgatggcgcaggaagccattaatgctatc
cgtcagcatatcggccagaaaattggcacggaatatgtgcccgccaagccgcgtatctat
acttccaaggtgaaaaacgcgcaggaagcgcatgaggccgtgcgccccacagatgtttcc
cgtacgcccgactccgttgctcggttcctgaacaacgatcagcgccggttgtacgaactg
gtatggaaacgtgcagttgccagccagatggaatccgcatctctggatcaggtggcggta
gatattgctggcccctccggccagaccgtactgcgcgccaatggctccatcatcacgttt
gagggctttctcaagctctaccgtgaagggcgcgatgatacggaaaaagcagcggatgat
gatgcccgtatgctgcccagcatgcaggaaaaagacccgctcaagcgcgaaaaagtggat
gccgagcagcacttcacccagccgccgccgcgttattccgaagcatcgctggtcaaaaag
atggaagagctgggtattggtcgcccctctacctatgcttccatcctgaccgtattgcag
gatcgcagctatgtgcggcttgaaaaccgccgctttattcccgaagcgcgcgggcgtctg
gttacggccttccttgtctcgttctttgagcgatatgtggatacgggctttaccgccagc
cttgaagaactgctggatgatatctccggtggccgcgcacagtggaagcaggttctggca
gcgttctggaacgatttttccaaagccgtatccggcaccaaggaactcaccattaccgat
gtgctcaacgcactcgataaggacttggggccattcttcttccccgatcgggcggatgga
tcagacccgcgggtttgcccttcctgcggcacaggccgccttgggctgaagctcggtcgt
tatggcgcatttattggttgctccaactatccagaatgccagtacacccgccgcttaacg
gcagatagcgccgaagaaggtgatgatgctgcccttaaggacggtatgcgccttttgggc
cagaacccggaaacaggtgaggatattaccgtgcgccaaggcccgtggggcctgtatgtg
cagcagggtgaacccaacccggaagacaaaaaagccaagcccaaacgtgcttctctgccc
aaaaacatcaatggggaaagcattacgctggatcaggcccttggcctgctttccctgccc
cgccttgttggcgttcaccccgaaacgggcgagcccattcaggccgggcttgggcgcttt
ggtccatttgtaaaaatgggcgcggtatatggctctctggacaaggacgatgacgttcta
accatcggcctgaaccgcgctgtggatgcactggccaaaaagctggcctccatccgcaat
ctgggtgtgcaccccaaggatggtgaaccggttatggtgcgcaagggccgctttggccca
tatgtgcagcatggtcagatagtagccaccctgccgcgcggcacagatatggatgccgta
acgctggatgaggccgtggctctgttggtagacaagggcaaacccctaaaagccaaggct
ggcgccaaaaagaaagccaccaccaaaacaacggccaaaaagaaaaccgcaaccaaaagc
acagccaaggctgatgaagacggtgcggaaaaagcggcgcccaagaaaaaagcacccgct
aaaaagaaggccaccaccacaacgcgcaagaaaaaagccgagaccgagtaa

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (4)   
   Pfam (4)   
All databases (13)   

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