KEGG   Acidiferrobacter sp. SPIII_3: C4901_00425
Entry
C4901_00425       CDS       T05469                                 
Name
(GenBank) RNA helicase
  KO
K03732  ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
Organism
acii  Acidiferrobacter sp. SPIII_3
Pathway
acii03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:acii00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    C4901_00425
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:acii03019]
    C4901_00425
Enzymes [BR:acii01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     C4901_00425
Messenger RNA biogenesis [BR:acii03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     C4901_00425
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_22 CMS1
Other DBs
NCBI-ProteinID: AWP21999
UniProt: A0A2Z3QVM4
Position
86608..88038
AA seq 476 aa
MNDTHLTQQAFSGLGLPEPLLAGVLGAGFTHCTPIQAATLPKALAGHDVAGQAQTGTGKT
AAFLLAVFNRLLTVSPPPDRRPNQPRALILAPTRELAIQIHKDALVLGQGCAQSVQLAYG
GTGYESQRKAIEEGVDILIGTPGRLIDYFKQHVFDLRALEVMVLDEADRMFDLGFIKDIR
YLLHRMPPVDKRLSLLFSATLSYRVMELAYEHMNNPELVRIEAEKITAERVRERLYHVGQ
EEKLPVLVGLLRSEQVSRALVFTNTKHAAERVQGWLAANDFGAAVLSGDVPQQKRQSLLA
DFQGGHFPVLVATDVAARGLHIPDVSHVFNYDLPQDAEDYVHRIGRTARAGAAGEAVSLA
CDEYAFSLMDIEAYIGHKIPVERVTDDLIVSLRRPAHKPPRERVGHHARSRGESAPRDRA
HRHSSGRPREQARAPQRPAQAASPAPKPAPSRPAETRPAEPVRPRGLKTPEKPVLG
NT seq 1431 nt   +upstreamnt  +downstreamnt
atgaatgatactcaccttacccagcaagcgttttccggcctcgggttgccggaaccactc
ctcgccggagtcctcggcgccgggttcacccactgcacacccatccaggccgccaccttg
cccaaggcgctcgcgggccacgacgtggccgggcaggcccagaccgggaccggcaagacc
gcggcctttcttctggcggtcttcaaccgcctcctgacggtgtcgccgcctccggatcga
cggccgaaccagccgcgcgccctgatcctcgcgcccacgcgcgaactggccatccagatc
cacaaggatgccctggtgctgggtcaaggatgcgcccagagtgtccagctcgcctatggc
gggaccggttacgagagccagcgcaaggccatcgaggagggcgtcgatatcctcatcggc
accccgggacgcctcatcgactatttcaagcagcacgtctttgatctgcgcgcgctggag
gtgatggtcctggacgaggccgaccgcatgttcgatctcggcttcatcaaggacatccgc
tacctcttgcatcgcatgccgccggtcgacaagcgcctgagcctgctgttttcggcgaca
ttgtcctatcgcgtcatggagcttgcctacgagcacatgaataaccccgagctcgtgcgc
atcgaggcggaaaagatcaccgccgagcgcgtgcgcgagcggctctatcacgtggggcag
gaggagaagcttccggtattggtcgggcttctgcgtagcgagcaggtgtcgcgggcgctg
gtgttcacgaataccaagcatgccgccgagcgcgtgcaggggtggctcgctgccaatgat
ttcggggccgcggtgctttccggggatgtcccgcagcaaaaacgtcagagtctgctcgcg
gatttccagggggggcattttccggtcctggtggccaccgacgtggcggcgcgcggtctg
cacataccggatgtgagccacgtcttcaattacgatctcccgcaggacgccgaggattat
gtgcatcgcatagggcggacggcgcgcgccggggccgccggcgaggcggtgagcctggcg
tgcgacgagtacgccttctcgctcatggatatcgaggcctatatcggtcacaagatcccg
gtggagcgcgtcacggacgacctgatcgtctccctgaggcgcccggcccacaagcccccg
cgcgagcgcgtcggccatcatgcacgatcacgtggcgagtccgccccgcgcgatcgcgcc
catcgccattcgtccgggcgaccccgcgagcaggcgcgcgctccgcaacgtcccgcgcaa
gcggcctctccggcccccaaaccggccccttcccggcctgccgagacccggcccgcggag
ccagtgcggccgcgcggtctcaagacccccgagaagccggtcctcggttag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (14)   

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